CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 94 | G94C | G94C | nonsyn | Ggc | Tgc | 1475 | 1474 | 0.999322 | 545-547 |
ORF1ab/nsp1 | 94 | G94C | G94C | nonsyn | GgC | TgT | 1475 | 1 | 0.000677966 | 545-547 |
Details of the mutation G94C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1474 | 1475 | All | 0.000282 |
ORF1ab/nsp1 | 94 | G94C | GgC | TgT | 1 | 1475 | All | 0 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 603 | 603 | AY.4 | 0.000939 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 161 | 161 | AY.9.1 | 0.01348 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 150 | 150 | AY.5 | 0.003097 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 59 | 59 | B.1.1.7 | 0.000053 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 59 | 59 | B.1.617.2 | 0.000222 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 42 | 42 | AY.23 | 0.002929 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 42 | 42 | AY.29 | 0.000662 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 32 | 32 | AY.119 | 0.00113 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 32 | 32 | AY.43 | 0.000142 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 28 | 28 | AY.39 | 0.000692 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 27 | 27 | B.1.234 | 0.003562 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 19 | 19 | AY.26 | 0.000538 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 19 | 19 | AY.3 | 0.000189 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 17 | 17 | AY.44 | 0.000103 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 15 | 15 | AY.4.2 | 0.000325 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 11 | 11 | AY.33 | 0.000735 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 10 | 10 | AY.42 | 0.000402 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 9 | 9 | AY.54 | 0.000858 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 6 | 6 | B.1.1.263 | 0.009346 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 4 | 5 | B.1.1 | 0.000073 |
ORF1ab/nsp1 | 94 | G94C | GgC | TgT | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 2 | 2 | B.1.1.433 | 0.002849 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | B.1.1.266 | 0.012195 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp1 | 94 | G94C | Ggc | Tgc | 1 | 1 | P.1.14 | 0.000048 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|