CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = G30G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp130G30GG30GsynggCggT319830960.968105353-355
ORF1ab/nsp130G30GG30GsynggCggA3198890.0278299353-355
ORF1ab/nsp130G30GG30GsynggCggG3198130.00406504353-355

Details of the mutation G30G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp130G30GggCggT30963198All0.000592
ORF1ab/nsp130G30GggCggA893198All0.000017
ORF1ab/nsp130G30GggCggG133198All0.000002
ORF1ab/nsp130G30GggCggT965972AY.40.001502
ORF1ab/nsp130G30GggCggA7972AY.40.000011
ORF1ab/nsp130G30GggCggT353387B.1.1.70.000316
ORF1ab/nsp130G30GggCggA34387B.1.1.70.00003
ORF1ab/nsp130G30GggCggT234237B.1.617.20.000881
ORF1ab/nsp130G30GggCggA3237B.1.617.20.000011
ORF1ab/nsp130G30GggCggT234234B.1.4290.005506
ORF1ab/nsp130G30GggCggT201201D.51
ORF1ab/nsp130G30GggCggT126126B.1.3810.984375
ORF1ab/nsp130G30GggCggT126126B.1.6370.009207
ORF1ab/nsp130G30GggCggT4253B.1.20.00037
ORF1ab/nsp130G30GggCggG1153B.1.20.000097
ORF1ab/nsp130G30GggCggT5152AY.1020.001352
ORF1ab/nsp130G30GggCggA152AY.1020.000027
ORF1ab/nsp130G30GggCggT4646B.1.1.2140.002551
ORF1ab/nsp130G30GggCggT4141B.1.3510.001219
ORF1ab/nsp130G30GggCggT4040P.1.100.010779
ORF1ab/nsp130G30GggCggT3537B.10.000321
ORF1ab/nsp130G30GggCggA237B.10.000018
ORF1ab/nsp130G30GggCggT1629AY.250.000096
ORF1ab/nsp130G30GggCggA1329AY.250.000078
ORF1ab/nsp130G30GggCggT2929AY.440.000177
ORF1ab/nsp130G30GggCggT2929Q.30.004206
ORF1ab/nsp130G30GggCggT2627AY.90.001757
ORF1ab/nsp130G30GggCggG127AY.90.000068
ORF1ab/nsp130G30GggCggT2626AY.30.000259
ORF1ab/nsp130G30GggCggT2121AY.390.000519
ORF1ab/nsp130G30GggCggT1819B.1.1770.000237
ORF1ab/nsp130G30GggCggA119B.1.1770.000013
ORF1ab/nsp130G30GggCggT1818B.1.3110.004942
ORF1ab/nsp130G30GggCggT1717AY.430.000075
ORF1ab/nsp130G30GggCggT1314AY.1030.000081
ORF1ab/nsp130G30GggCggA114AY.1030.000006
ORF1ab/nsp130G30GggCggT1414AY.330.000935
ORF1ab/nsp130G30GggCggT1414P.10.000221
ORF1ab/nsp130G30GggCggT1414Q.10.001769
ORF1ab/nsp130G30GggCggT1313P.1.170.002103
ORF1ab/nsp130G30GggCggT1111B.1.1.4480.022358
ORF1ab/nsp130G30GggCggT1111B.1.5260.000259
ORF1ab/nsp130G30GggCggT710AY.4.20.000152
ORF1ab/nsp130G30GggCggA310AY.4.20.000065
ORF1ab/nsp130G30GggCggT910B.1.1600.000281
ORF1ab/nsp130G30GggCggA110B.1.1600.000031
ORF1ab/nsp130G30GggCggT1010B.1.2210.00071
ORF1ab/nsp130G30GggCggT99AY.980.000711
ORF1ab/nsp130G30GggCggT99B.1.10.000163
ORF1ab/nsp130G30GggCggT78AY.470.000218
ORF1ab/nsp130G30GggCggA18AY.470.000031
ORF1ab/nsp130G30GggCggT88B.1.177.810.001515
ORF1ab/nsp130G30GggCggT77AY.1130.000997
ORF1ab/nsp130G30GggCggT77AY.1180.000439
ORF1ab/nsp130G30GggCggT77AY.1190.000247
ORF1ab/nsp130G30GggCggT77AY.420.000282
ORF1ab/nsp130G30GggCggA77P.1.140.000335
ORF1ab/nsp130G30GggCggT77R.10.00063
ORF1ab/nsp130G30GggCggT56AY.98.10.000242
ORF1ab/nsp130G30GggCggA16AY.98.10.000048
ORF1ab/nsp130G30GggCggT66B.1.1.2840.000644
ORF1ab/nsp130G30GggCggT66B.1.1.5190.000238
ORF1ab/nsp130G30GggCggT66B.1.4170.171429
ORF1ab/nsp130G30GggCggT66Q.40.002729
ORF1ab/nsp130G30GggCggT55AY.1140.001156
ORF1ab/nsp130G30GggCggT55AY.360.000741
ORF1ab/nsp130G30GggCggT55B.1.4270.000252
ORF1ab/nsp130G30GggCggT45P.20.000747
ORF1ab/nsp130G30GggCggA15P.20.000187
ORF1ab/nsp130G30GggCggT44AY.1170.000338
ORF1ab/nsp130G30GggCggT44AY.200.000155
ORF1ab/nsp130G30GggCggT44AY.39.10.000158
ORF1ab/nsp130G30GggCggT44AY.460.000416
ORF1ab/nsp130G30GggCggT44AY.750.000224
ORF1ab/nsp130G30GggCggT44AY.9.10.000335
ORF1ab/nsp130G30GggCggT34B0.000383
ORF1ab/nsp130G30GggCggA14B0.000128
ORF1ab/nsp130G30GggCggT44B.1.177.570.001124
ORF1ab/nsp130G30GggCggT24B.1.2430.000139
ORF1ab/nsp130G30GggCggG14B.1.2430.00007
ORF1ab/nsp130G30GggCggA14B.1.2430.00007
ORF1ab/nsp130G30GggCggT44B.1.3960.002823
ORF1ab/nsp130G30GggCggA34B.1.5960.000261
ORF1ab/nsp130G30GggCggT14B.1.5960.000087
ORF1ab/nsp130G30GggCggT33AY.1060.001005
ORF1ab/nsp130G30GggCggT33AY.1200.000112
ORF1ab/nsp130G30GggCggT33AY.29.10.000662
ORF1ab/nsp130G30GggCggT33AY.50.000062
ORF1ab/nsp130G30GggCggT33AY.5.30.001012
ORF1ab/nsp130G30GggCggT33AY.790.003632
ORF1ab/nsp130G30GggCggT23B.1.1.2160.001781
ORF1ab/nsp130G30GggCggA13B.1.1.2160.00089
ORF1ab/nsp130G30GggCggT33B.1.1110.003525
ORF1ab/nsp130G30GggCggT33B.1.5250.000339
ORF1ab/nsp130G30GggCggT33B.1.5820.001472
ORF1ab/nsp130G30GggCggT33P.1.150.000697
ORF1ab/nsp130G30GggCggT22AY.1000.000092
ORF1ab/nsp130G30GggCggA22AY.230.000139
ORF1ab/nsp130G30GggCggT22AY.3.10.000171
ORF1ab/nsp130G30GggCggT22AY.34.10.00102
ORF1ab/nsp130G30GggCggT22AY.4.30.001684
ORF1ab/nsp130G30GggCggT22AY.4.50.000215
ORF1ab/nsp130G30GggCggT22AY.450.000243
ORF1ab/nsp130G30GggCggT22AY.46.40.000329
ORF1ab/nsp130G30GggCggT22AY.700.000417
ORF1ab/nsp130G30GggCggA22AY.710.00095
ORF1ab/nsp130G30GggCggT22B.1.1.2200.003717
ORF1ab/nsp130G30GggCggT22B.1.1.280.000622
ORF1ab/nsp130G30GggCggT22B.1.1.3510.005587
ORF1ab/nsp130G30GggCggT22B.1.1.4820.046512
ORF1ab/nsp130G30GggCggT22B.1.177.410.005
ORF1ab/nsp130G30GggCggT22B.1.2350.005038
ORF1ab/nsp130G30GggCggT22B.1.5090.001732
ORF1ab/nsp130G30GggCggT22B.1.5240.002813
ORF1ab/nsp130G30GggCggT22B.1.5340.025
ORF1ab/nsp130G30GggCggT22B.1.5950.000522
ORF1ab/nsp130G30GggCggT22B.1.6250.004706
ORF1ab/nsp130G30GggCggT22C.37.10.005236
ORF1ab/nsp130G30GggCggT11A0.000387
ORF1ab/nsp130G30GggCggT11AW.10.003049
ORF1ab/nsp130G30GggCggT11AY.1100.000113
ORF1ab/nsp130G30GggCggA11AY.1110.000183
ORF1ab/nsp130G30GggCggT11AY.1210.000135
ORF1ab/nsp130G30GggCggT11AY.130.000161
ORF1ab/nsp130G30GggCggT11AY.260.000028
ORF1ab/nsp130G30GggCggT11AY.290.000016
ORF1ab/nsp130G30GggCggT11AY.350.000233
ORF1ab/nsp130G30GggCggT11AY.370.000316
ORF1ab/nsp130G30GggCggT11AY.4.10.000737
ORF1ab/nsp130G30GggCggT11AY.4.2.10.000149
ORF1ab/nsp130G30GggCggT11AY.4.40.000409
ORF1ab/nsp130G30GggCggT11AY.530.000288
ORF1ab/nsp130G30GggCggT11AY.580.000907
ORF1ab/nsp130G30GggCggT11AY.610.000105
ORF1ab/nsp130G30GggCggA11AY.630.000387
ORF1ab/nsp130G30GggCggT11AY.7.20.000559
ORF1ab/nsp130G30GggCggT11AY.730.000665
ORF1ab/nsp130G30GggCggT11AY.770.001127
ORF1ab/nsp130G30GggCggT11AY.80.000606
ORF1ab/nsp130G30GggCggT11AY.850.000427
ORF1ab/nsp130G30GggCggT11AY.860.00083
ORF1ab/nsp130G30GggCggT11AY.870.000833
ORF1ab/nsp130G30GggCggT11AY.880.000884
ORF1ab/nsp130G30GggCggT11B.1.1.10.000327
ORF1ab/nsp130G30GggCggA11B.1.1.2860.002899
ORF1ab/nsp130G30GggCggT11B.1.1.2890.002083
ORF1ab/nsp130G30GggCggT11B.1.1.2940.001266
ORF1ab/nsp130G30GggCggT11B.1.1.3060.000438
ORF1ab/nsp130G30GggCggT11B.1.1.3110.000358
ORF1ab/nsp130G30GggCggT11B.1.1.3980.003226
ORF1ab/nsp130G30GggCggT11B.1.1.4160.000905
ORF1ab/nsp130G30GggCggT11B.1.1.4200.001006
ORF1ab/nsp130G30GggCggT11B.1.1.700.000341
ORF1ab/nsp130G30GggCggT11B.1.160.300.002976
ORF1ab/nsp130G30GggCggT11B.1.177.440.000519
ORF1ab/nsp130G30GggCggT11B.1.177.580.001332
ORF1ab/nsp130G30GggCggT11B.1.177.70.000165
ORF1ab/nsp130G30GggCggT11B.1.177.860.000183
ORF1ab/nsp130G30GggCggT11B.1.2360.002053
ORF1ab/nsp130G30GggCggT11B.1.2580.000067
ORF1ab/nsp130G30GggCggT11B.1.351.30.000876
ORF1ab/nsp130G30GggCggT11B.1.3560.001727
ORF1ab/nsp130G30GggCggT11B.1.3750.00082
ORF1ab/nsp130G30GggCggT11B.1.4090.000781
ORF1ab/nsp130G30GggCggT11B.1.4220.000812
ORF1ab/nsp130G30GggCggT11B.1.466.20.000391
ORF1ab/nsp130G30GggCggT11B.1.4870.019608
ORF1ab/nsp130G30GggCggT11B.1.4990.00105
ORF1ab/nsp130G30GggCggT11B.1.5670.003333
ORF1ab/nsp130G30GggCggT11B.1.5880.00091
ORF1ab/nsp130G30GggCggT11B.1.6210.000089
ORF1ab/nsp130G30GggCggT11B.1.6320.006711
ORF1ab/nsp130G30GggCggT11B.1.6340.003425
ORF1ab/nsp130G30GggCggT11C.10.002392
ORF1ab/nsp130G30GggCggT11C.350.000774
ORF1ab/nsp130G30GggCggT11C.370.000116
ORF1ab/nsp130G30GggCggT11D.20.000075
ORF1ab/nsp130G30GggCggT11P.1.160.000374
ORF1ab/nsp130G30GggCggT11P.1.20.001156
ORF1ab/nsp130G30GggCggT11P.1.70.000319
ORF1ab/nsp130G30GggCggT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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