CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = G30C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp130G30CG30CnonsynGgcTgc1531531353-355

Details of the mutation G30C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp130G30CGgcTgc153153All0.000029
ORF1ab/nsp130G30CGgcTgc5151B.1.20.000449
ORF1ab/nsp130G30CGgcTgc3333AY.40.000051
ORF1ab/nsp130G30CGgcTgc2727B.1.1.70.000024
ORF1ab/nsp130G30CGgcTgc88AY.430.000035
ORF1ab/nsp130G30CGgcTgc22AY.690.000373
ORF1ab/nsp130G30CGgcTgc22B.1.1.1410.004024
ORF1ab/nsp130G30CGgcTgc22B.1.1770.000026
ORF1ab/nsp130G30CGgcTgc22B.1.177.810.000379
ORF1ab/nsp130G30CGgcTgc22B.1.617.20.000008
ORF1ab/nsp130G30CGgcTgc11A.2.50.000499
ORF1ab/nsp130G30CGgcTgc11AY.1000.000046
ORF1ab/nsp130G30CGgcTgc11AY.1020.000027
ORF1ab/nsp130G30CGgcTgc11AY.1050.000643
ORF1ab/nsp130G30CGgcTgc11AY.1190.000035
ORF1ab/nsp130G30CGgcTgc11AY.1210.000135
ORF1ab/nsp130G30CGgcTgc11AY.130.000161
ORF1ab/nsp130G30CGgcTgc11AY.230.00007
ORF1ab/nsp130G30CGgcTgc11AY.250.000006
ORF1ab/nsp130G30CGgcTgc11AY.270.000065
ORF1ab/nsp130G30CGgcTgc11AY.360.000148
ORF1ab/nsp130G30CGgcTgc11AY.460.000104
ORF1ab/nsp130G30CGgcTgc11B0.000128
ORF1ab/nsp130G30CGgcTgc11B.10.000009
ORF1ab/nsp130G30CGgcTgc11B.1.1.1740.003378
ORF1ab/nsp130G30CGgcTgc11B.1.1.2880.001916
ORF1ab/nsp130G30CGgcTgc11B.1.1.3060.000438
ORF1ab/nsp130G30CGgcTgc11B.1.1.5190.00004
ORF1ab/nsp130G30CGgcTgc11B.1.177.210.000076
ORF1ab/nsp130G30CGgcTgc11B.1.177.570.000281
ORF1ab/nsp130G30CGgcTgc11B.1.5260.000024
ORF1ab/nsp130G30CGgcTgc11P.10.000016
ORF1ab/nsp130G30CGgcTgc11P.1.140.000048
ORF1ab/nsp130G30CGgcTgc11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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