CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = G180G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1180G180GG180GsynggGggT462231280.676763803-805
ORF1ab/nsp1180G180GG180GsynggGggA462214920.322804803-805
ORF1ab/nsp1180G180GG180GsynggGggC462220.000432713803-805

Details of the mutation G180G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1180G180GggGggT31284622All0.000598
ORF1ab/nsp1180G180GggGggA14924622All0.000285
ORF1ab/nsp1180G180GggGggC24622All0
ORF1ab/nsp1180G180GggGggT13501447AY.40.002101
ORF1ab/nsp1180G180GggGggA971447AY.40.000151
ORF1ab/nsp1180G180GggGggT961961B.1.214.20.576139
ORF1ab/nsp1180G180GggGggA211371B.1.1.70.000189
ORF1ab/nsp1180G180GggGggT160371B.1.1.70.000143
ORF1ab/nsp1180G180GggGggA278342B.1.617.20.001047
ORF1ab/nsp1180G180GggGggT63342B.1.617.20.000237
ORF1ab/nsp1180G180GggGggC1342B.1.617.20.000004
ORF1ab/nsp1180G180GggGggA113119B.1.2210.008027
ORF1ab/nsp1180G180GggGggT6119B.1.2210.000426
ORF1ab/nsp1180G180GggGggT92110AY.470.002862
ORF1ab/nsp1180G180GggGggA18110AY.470.00056
ORF1ab/nsp1180G180GggGggA9494B.1.6210.008321
ORF1ab/nsp1180G180GggGggA7685B.1.20.000669
ORF1ab/nsp1180G180GggGggT985B.1.20.000079
ORF1ab/nsp1180G180GggGggT5480B.1.10.00098
ORF1ab/nsp1180G180GggGggA2680B.1.10.000472
ORF1ab/nsp1180G180GggGggA3260AY.430.000142
ORF1ab/nsp1180G180GggGggT2860AY.430.000124
ORF1ab/nsp1180G180GggGggA4651AY.1000.002116
ORF1ab/nsp1180G180GggGggT551AY.1000.00023
ORF1ab/nsp1180G180GggGggA2648B.10.000238
ORF1ab/nsp1180G180GggGggT2248B.10.000202
ORF1ab/nsp1180G180GggGggT4646B.1.5510.059355
ORF1ab/nsp1180G180GggGggT4244B.1.4290.000988
ORF1ab/nsp1180G180GggGggA244B.1.4290.000047
ORF1ab/nsp1180G180GggGggA4143AY.980.003239
ORF1ab/nsp1180G180GggGggT243AY.980.000158
ORF1ab/nsp1180G180GggGggA2537AY.440.000152
ORF1ab/nsp1180G180GggGggT1237AY.440.000073
ORF1ab/nsp1180G180GggGggA3537P.10.000551
ORF1ab/nsp1180G180GggGggT237P.10.000032
ORF1ab/nsp1180G180GggGggA3536AY.350.008157
ORF1ab/nsp1180G180GggGggT136AY.350.000233
ORF1ab/nsp1180G180GggGggT3434AY.4.20.000737
ORF1ab/nsp1180G180GggGggT1629AY.1020.000424
ORF1ab/nsp1180G180GggGggA1329AY.1020.000345
ORF1ab/nsp1180G180GggGggT2429AY.9.10.002009
ORF1ab/nsp1180G180GggGggA529AY.9.10.000419
ORF1ab/nsp1180G180GggGggA2529B.1.5250.002829
ORF1ab/nsp1180G180GggGggT429B.1.5250.000453
ORF1ab/nsp1180G180GggGggA1628AY.250.000096
ORF1ab/nsp1180G180GggGggT1228AY.250.000072
ORF1ab/nsp1180G180GggGggA2626AY.10.010289
ORF1ab/nsp1180G180GggGggA1223AY.30.000119
ORF1ab/nsp1180G180GggGggT1123AY.30.000109
ORF1ab/nsp1180G180GggGggA2222AY.1140.005084
ORF1ab/nsp1180G180GggGggT918AY.1030.000056
ORF1ab/nsp1180G180GggGggA918AY.1030.000056
ORF1ab/nsp1180G180GggGggT1818B.1.214.30.128571
ORF1ab/nsp1180G180GggGggT1718B.1.5260.0004
ORF1ab/nsp1180G180GggGggA118B.1.5260.000024
ORF1ab/nsp1180G180GggGggA1112B.1.3510.000327
ORF1ab/nsp1180G180GggGggT112B.1.3510.00003
ORF1ab/nsp1180G180GggGggA711AY.39.10.000277
ORF1ab/nsp1180G180GggGggT411AY.39.10.000158
ORF1ab/nsp1180G180GggGggA910AY.16.10.004229
ORF1ab/nsp1180G180GggGggT110AY.16.10.00047
ORF1ab/nsp1180G180GggGggA910AY.290.000142
ORF1ab/nsp1180G180GggGggT110AY.290.000016
ORF1ab/nsp1180G180GggGggT810AY.420.000322
ORF1ab/nsp1180G180GggGggA210AY.420.00008
ORF1ab/nsp1180G180GggGggT99AY.4.40.003682
ORF1ab/nsp1180G180GggGggA99AY.850.003845
ORF1ab/nsp1180G180GggGggA79B.1.1.2140.000388
ORF1ab/nsp1180G180GggGggT29B.1.1.2140.000111
ORF1ab/nsp1180G180GggGggA99B.1.177.540.005458
ORF1ab/nsp1180G180GggGggA68AY.390.000148
ORF1ab/nsp1180G180GggGggT28AY.390.000049
ORF1ab/nsp1180G180GggGggA58B.1.1770.000066
ORF1ab/nsp1180G180GggGggT38B.1.1770.00004
ORF1ab/nsp1180G180GggGggT48B.1.2580.000266
ORF1ab/nsp1180G180GggGggA48B.1.2580.000266
ORF1ab/nsp1180G180GggGggT67AY.50.000124
ORF1ab/nsp1180G180GggGggA17AY.50.000021
ORF1ab/nsp1180G180GggGggT77B.1.177.210.000535
ORF1ab/nsp1180G180GggGggT36AY.330.0002
ORF1ab/nsp1180G180GggGggA36AY.330.0002
ORF1ab/nsp1180G180GggGggA36AY.340.000291
ORF1ab/nsp1180G180GggGggT36AY.340.000291
ORF1ab/nsp1180G180GggGggA66AY.480.002791
ORF1ab/nsp1180G180GggGggA36AY.98.10.000145
ORF1ab/nsp1180G180GggGggT36AY.98.10.000145
ORF1ab/nsp1180G180GggGggA45AY.230.000279
ORF1ab/nsp1180G180GggGggT15AY.230.00007
ORF1ab/nsp1180G180GggGggT55AY.60.000206
ORF1ab/nsp1180G180GggGggT55B.1.4220.004062
ORF1ab/nsp1180G180GggGggA44AY.130.000644
ORF1ab/nsp1180G180GggGggT34AY.200.000117
ORF1ab/nsp1180G180GggGggA14AY.200.000039
ORF1ab/nsp1180G180GggGggT34AY.4.2.10.000447
ORF1ab/nsp1180G180GggGggA14AY.4.2.10.000149
ORF1ab/nsp1180G180GggGggA44B.1.4270.000202
ORF1ab/nsp1180G180GggGggA44B.1.5960.000349
ORF1ab/nsp1180G180GggGggA33A.2.30.014218
ORF1ab/nsp1180G180GggGggT23AY.1200.000074
ORF1ab/nsp1180G180GggGggA13AY.1200.000037
ORF1ab/nsp1180G180GggGggT33AY.220.006276
ORF1ab/nsp1180G180GggGggA23AY.450.000243
ORF1ab/nsp1180G180GggGggT13AY.450.000122
ORF1ab/nsp1180G180GggGggA33AY.5.30.001012
ORF1ab/nsp1180G180GggGggA33AY.530.000863
ORF1ab/nsp1180G180GggGggA33AY.680.000821
ORF1ab/nsp1180G180GggGggA33AY.9.20.00011
ORF1ab/nsp1180G180GggGggA33B.1.177.730.001699
ORF1ab/nsp1180G180GggGggT23B.1.2430.000139
ORF1ab/nsp1180G180GggGggA13B.1.2430.00007
ORF1ab/nsp1180G180GggGggA33P.1.140.000143
ORF1ab/nsp1180G180GggGggT33Q.80.000495
ORF1ab/nsp1180G180GggGggT22A.2.50.000998
ORF1ab/nsp1180G180GggGggA22AY.1080.002205
ORF1ab/nsp1180G180GggGggA22AY.160.000759
ORF1ab/nsp1180G180GggGggT12AY.460.000104
ORF1ab/nsp1180G180GggGggA12AY.460.000104
ORF1ab/nsp1180G180GggGggA22AY.520.001629
ORF1ab/nsp1180G180GggGggA22AY.590.001059
ORF1ab/nsp1180G180GggGggA12AY.70.000196
ORF1ab/nsp1180G180GggGggT12AY.70.000196
ORF1ab/nsp1180G180GggGggA22AY.720.002721
ORF1ab/nsp1180G180GggGggT12AY.99.20.000092
ORF1ab/nsp1180G180GggGggA12AY.99.20.000092
ORF1ab/nsp1180G180GggGggA22B.1.1.2410.004141
ORF1ab/nsp1180G180GggGggA22B.1.1.4340.000697
ORF1ab/nsp1180G180GggGggA22B.1.177.570.000562
ORF1ab/nsp1180G180GggGggT22B.1.214.10.04
ORF1ab/nsp1180G180GggGggA22B.1.2400.000431
ORF1ab/nsp1180G180GggGggA22B.1.258.140.001961
ORF1ab/nsp1180G180GggGggT12B.1.36.290.000517
ORF1ab/nsp1180G180GggGggA12B.1.36.290.000517
ORF1ab/nsp1180G180GggGggT22B.1.3670.001585
ORF1ab/nsp1180G180GggGggT22B.1.617.10.000258
ORF1ab/nsp1180G180GggGggT22B.1.6370.000146
ORF1ab/nsp1180G180GggGggA22B.3.10.003317
ORF1ab/nsp1180G180GggGggA22C.160.002121
ORF1ab/nsp1180G180GggGggA22P.1.120.000968
ORF1ab/nsp1180G180GggGggA22P.1.160.000748
ORF1ab/nsp1180G180GggGggA22P.60.006289
ORF1ab/nsp1180G180GggGggA11A.2.20.001689
ORF1ab/nsp1180G180GggGggA11A.230.010526
ORF1ab/nsp1180G180GggGggA11A.30.002096
ORF1ab/nsp1180G180GggGggA11AY.1180.000063
ORF1ab/nsp1180G180GggGggT11AY.1190.000035
ORF1ab/nsp1180G180GggGggT11AY.1210.000135
ORF1ab/nsp1180G180GggGggA11AY.260.000028
ORF1ab/nsp1180G180GggGggT11AY.300.000396
ORF1ab/nsp1180G180GggGggA11AY.370.000316
ORF1ab/nsp1180G180GggGggA11AY.46.30.000934
ORF1ab/nsp1180G180GggGggT11AY.46.60.000072
ORF1ab/nsp1180G180GggGggT11AY.600.000938
ORF1ab/nsp1180G180GggGggT11AY.700.000209
ORF1ab/nsp1180G180GggGggA11AY.710.000475
ORF1ab/nsp1180G180GggGggA11AY.750.000056
ORF1ab/nsp1180G180GggGggA11AY.770.001127
ORF1ab/nsp1180G180GggGggA11AY.930.000273
ORF1ab/nsp1180G180GggGggC11AY.99.10.001553
ORF1ab/nsp1180G180GggGggA11B0.000128
ORF1ab/nsp1180G180GggGggA11B.1.1.1410.002012
ORF1ab/nsp1180G180GggGggA11B.1.1.2200.001859
ORF1ab/nsp1180G180GggGggA11B.1.1.2220.000204
ORF1ab/nsp1180G180GggGggT11B.1.1.250.000569
ORF1ab/nsp1180G180GggGggA11B.1.1.280.000311
ORF1ab/nsp1180G180GggGggA11B.1.1.3110.000358
ORF1ab/nsp1180G180GggGggA11B.1.1.3480.000796
ORF1ab/nsp1180G180GggGggT11B.1.1.4580.041667
ORF1ab/nsp1180G180GggGggT11B.1.1.5190.00004
ORF1ab/nsp1180G180GggGggT11B.1.1.5280.004808
ORF1ab/nsp1180G180GggGggA11B.1.1600.000031
ORF1ab/nsp1180G180GggGggA11B.1.177.150.000631
ORF1ab/nsp1180G180GggGggT11B.1.177.160.000664
ORF1ab/nsp1180G180GggGggT11B.1.177.440.000519
ORF1ab/nsp1180G180GggGggA11B.1.2190.009434
ORF1ab/nsp1180G180GggGggA11B.1.2340.000132
ORF1ab/nsp1180G180GggGggT11B.1.258.110.000396
ORF1ab/nsp1180G180GggGggT11B.1.258.160.001637
ORF1ab/nsp1180G180GggGggA11B.1.258.170.000104
ORF1ab/nsp1180G180GggGggT11B.1.3010.005917
ORF1ab/nsp1180G180GggGggA11B.1.350.008475
ORF1ab/nsp1180G180GggGggT11B.1.3560.001727
ORF1ab/nsp1180G180GggGggA11B.1.3690.000285
ORF1ab/nsp1180G180GggGggT11B.1.3960.000706
ORF1ab/nsp1180G180GggGggA11B.1.3980.002976
ORF1ab/nsp1180G180GggGggA11B.1.3990.001934
ORF1ab/nsp1180G180GggGggT11B.1.4040.001302
ORF1ab/nsp1180G180GggGggT11B.1.4160.001269
ORF1ab/nsp1180G180GggGggT11B.1.416.10.001563
ORF1ab/nsp1180G180GggGggT11B.1.4350.011364
ORF1ab/nsp1180G180GggGggA11B.1.4530.003236
ORF1ab/nsp1180G180GggGggA11B.1.466.20.000391
ORF1ab/nsp1180G180GggGggT11B.1.4970.000315
ORF1ab/nsp1180G180GggGggT11B.1.5150.014493
ORF1ab/nsp1180G180GggGggA11B.1.5300.007143
ORF1ab/nsp1180G180GggGggT11B.1.5500.013699
ORF1ab/nsp1180G180GggGggA11B.1.5560.007519
ORF1ab/nsp1180G180GggGggA11B.1.5760.000907
ORF1ab/nsp1180G180GggGggA11B.1.5800.004065
ORF1ab/nsp1180G180GggGggA11B.1.6190.000871
ORF1ab/nsp1180G180GggGggA11B.280.003279
ORF1ab/nsp1180G180GggGggT11B.550.00295
ORF1ab/nsp1180G180GggGggT11C.370.000116
ORF1ab/nsp1180G180GggGggA11P.1.10.10.00813
ORF1ab/nsp1180G180GggGggA11Q.10.000126
ORF1ab/nsp1180G180GggGggT11Q.20.000613
ORF1ab/nsp1180G180GggGggT11Q.30.000145
ORF1ab/nsp1180G180GggGggT11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.