CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 150 | G150G | G150G | syn | ggC | ggT | 1592 | 1483 | 0.931533 | 713-715 |
ORF1ab/nsp1 | 150 | G150G | G150G | syn | ggC | ggA | 1592 | 61 | 0.0383166 | 713-715 |
ORF1ab/nsp1 | 150 | G150G | G150G | syn | ggC | ggG | 1592 | 48 | 0.0301508 | 713-715 |
Details of the mutation G150G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1483 | 1592 | All | 0.000284 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggA | 61 | 1592 | All | 0.000012 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggG | 48 | 1592 | All | 0.000009 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 367 | 367 | B.1.3 | 0.960733 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 188 | 268 | B.1.1.7 | 0.000168 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggA | 46 | 268 | B.1.1.7 | 0.000041 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggG | 34 | 268 | B.1.1.7 | 0.00003 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 201 | 201 | AY.110 | 0.02265 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 127 | 127 | AY.43 | 0.000563 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 85 | 86 | B.1.2 | 0.000748 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggA | 1 | 86 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 84 | 84 | B.1.617.2 | 0.000316 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 62 | 64 | AY.4 | 0.000096 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggA | 2 | 64 | AY.4 | 0.000003 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 62 | 62 | AA.5 | 1 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 36 | 36 | AY.103 | 0.000224 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 35 | 35 | AY.44 | 0.000213 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 20 | 35 | B.1 | 0.000183 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggA | 8 | 35 | B.1 | 0.000073 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggG | 7 | 35 | B.1 | 0.000064 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 23 | 25 | AY.25 | 0.000138 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggG | 1 | 25 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggA | 1 | 25 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 22 | 22 | AY.3 | 0.000219 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 13 | 13 | AY.75 | 0.000728 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 10 | 10 | AY.39 | 0.000247 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 6 | 9 | AY.100 | 0.000276 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggG | 3 | 9 | AY.100 | 0.000138 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 5 | 5 | B.1.232 | 0.002687 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 3 | 4 | P.1 | 0.000047 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggA | 1 | 4 | P.1 | 0.000016 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 3 | 3 | B.1.1.263 | 0.004673 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 3 | 3 | B.1.1.411 | 0.044118 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 2 | 0.055556 | |
ORF1ab/nsp1 | 150 | G150G | ggC | ggA | 1 | 2 | 0.055556 | |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 2 | AY.32 | 0.000532 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggA | 1 | 2 | AY.32 | 0.000532 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 2 | 2 | B.1.1.297 | 0.004474 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 2 | 2 | B.1.160.10 | 0.016129 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggG | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 2 | B.1.417 | 0.028571 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggG | 1 | 2 | B.1.417 | 0.028571 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggG | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp1 | 150 | G150G | ggC | ggT | 1 | 1 | P.2 | 0.000187 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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