CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = G150G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1150G150GG150GsynggCggT159214830.931533713-715
ORF1ab/nsp1150G150GG150GsynggCggA1592610.0383166713-715
ORF1ab/nsp1150G150GG150GsynggCggG1592480.0301508713-715

Details of the mutation G150G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1150G150GggCggT14831592All0.000284
ORF1ab/nsp1150G150GggCggA611592All0.000012
ORF1ab/nsp1150G150GggCggG481592All0.000009
ORF1ab/nsp1150G150GggCggT367367B.1.30.960733
ORF1ab/nsp1150G150GggCggT188268B.1.1.70.000168
ORF1ab/nsp1150G150GggCggA46268B.1.1.70.000041
ORF1ab/nsp1150G150GggCggG34268B.1.1.70.00003
ORF1ab/nsp1150G150GggCggT201201AY.1100.02265
ORF1ab/nsp1150G150GggCggT127127AY.430.000563
ORF1ab/nsp1150G150GggCggT8586B.1.20.000748
ORF1ab/nsp1150G150GggCggA186B.1.20.000009
ORF1ab/nsp1150G150GggCggT8484B.1.617.20.000316
ORF1ab/nsp1150G150GggCggT6264AY.40.000096
ORF1ab/nsp1150G150GggCggA264AY.40.000003
ORF1ab/nsp1150G150GggCggT6262AA.51
ORF1ab/nsp1150G150GggCggT3636AY.1030.000224
ORF1ab/nsp1150G150GggCggT3535AY.440.000213
ORF1ab/nsp1150G150GggCggT2035B.10.000183
ORF1ab/nsp1150G150GggCggA835B.10.000073
ORF1ab/nsp1150G150GggCggG735B.10.000064
ORF1ab/nsp1150G150GggCggT2325AY.250.000138
ORF1ab/nsp1150G150GggCggG125AY.250.000006
ORF1ab/nsp1150G150GggCggA125AY.250.000006
ORF1ab/nsp1150G150GggCggT2222AY.30.000219
ORF1ab/nsp1150G150GggCggT1313AY.750.000728
ORF1ab/nsp1150G150GggCggT1010AY.390.000247
ORF1ab/nsp1150G150GggCggT69AY.1000.000276
ORF1ab/nsp1150G150GggCggG39AY.1000.000138
ORF1ab/nsp1150G150GggCggT66AY.290.000095
ORF1ab/nsp1150G150GggCggT55AY.200.000194
ORF1ab/nsp1150G150GggCggT55AY.60.000206
ORF1ab/nsp1150G150GggCggT55B.1.2320.002687
ORF1ab/nsp1150G150GggCggT55C.370.00058
ORF1ab/nsp1150G150GggCggT44AY.1210.000541
ORF1ab/nsp1150G150GggCggT44B.1.1.2140.000222
ORF1ab/nsp1150G150GggCggT44B.1.1.5190.000159
ORF1ab/nsp1150G150GggCggT44B.1.4290.000094
ORF1ab/nsp1150G150GggCggT34P.10.000047
ORF1ab/nsp1150G150GggCggA14P.10.000016
ORF1ab/nsp1150G150GggCggT33AY.460.000312
ORF1ab/nsp1150G150GggCggT33AY.530.000863
ORF1ab/nsp1150G150GggCggT33AY.90.000203
ORF1ab/nsp1150G150GggCggT33B.1.10.000054
ORF1ab/nsp1150G150GggCggT33B.1.1.2630.004673
ORF1ab/nsp1150G150GggCggT33B.1.1.4110.044118
ORF1ab/nsp1150G150GggCggT33B.1.258.170.000312
ORF1ab/nsp1150G150GggCggT33B.1.3690.000856
ORF1ab/nsp1150G150GggCggT33B.1.5960.000261
ORF1ab/nsp1150G150GggCggT33P.1.140.000143
ORF1ab/nsp1150G150GggCggT120.055556
ORF1ab/nsp1150G150GggCggA120.055556
ORF1ab/nsp1150G150GggCggT22AY.1020.000053
ORF1ab/nsp1150G150GggCggT22AY.1180.000125
ORF1ab/nsp1150G150GggCggT22AY.230.000139
ORF1ab/nsp1150G150GggCggT22AY.260.000057
ORF1ab/nsp1150G150GggCggT12AY.320.000532
ORF1ab/nsp1150G150GggCggA12AY.320.000532
ORF1ab/nsp1150G150GggCggT22B.1.1.2970.004474
ORF1ab/nsp1150G150GggCggT22B.1.1.3060.000877
ORF1ab/nsp1150G150GggCggT22B.1.160.100.016129
ORF1ab/nsp1150G150GggCggG12B.1.1770.000013
ORF1ab/nsp1150G150GggCggT12B.1.1770.000013
ORF1ab/nsp1150G150GggCggT22B.1.3670.001585
ORF1ab/nsp1150G150GggCggT12B.1.4170.028571
ORF1ab/nsp1150G150GggCggG12B.1.4170.028571
ORF1ab/nsp1150G150GggCggT22B.1.5260.000047
ORF1ab/nsp1150G150GggCggT22B.1.5640.000852
ORF1ab/nsp1150G150GggCggT22P.1.150.000465
ORF1ab/nsp1150G150GggCggT22Q.40.00091
ORF1ab/nsp1150G150GggCggT11A0.000387
ORF1ab/nsp1150G150GggCggT11A.2.20.001689
ORF1ab/nsp1150G150GggCggT11AY.1160.000287
ORF1ab/nsp1150G150GggCggT11AY.140.000088
ORF1ab/nsp1150G150GggCggT11AY.350.000233
ORF1ab/nsp1150G150GggCggT11AY.39.10.00004
ORF1ab/nsp1150G150GggCggT11AY.4.20.000022
ORF1ab/nsp1150G150GggCggT11AY.4.2.10.000149
ORF1ab/nsp1150G150GggCggT11AY.410.000294
ORF1ab/nsp1150G150GggCggT11AY.46.20.000635
ORF1ab/nsp1150G150GggCggT11AY.470.000031
ORF1ab/nsp1150G150GggCggT11AY.50.000021
ORF1ab/nsp1150G150GggCggT11AY.500.000799
ORF1ab/nsp1150G150GggCggT11AY.540.000095
ORF1ab/nsp1150G150GggCggT11AY.610.000105
ORF1ab/nsp1150G150GggCggT11AY.710.000475
ORF1ab/nsp1150G150GggCggT11AY.75.10.00018
ORF1ab/nsp1150G150GggCggT11AY.770.001127
ORF1ab/nsp1150G150GggCggT11AY.950.000761
ORF1ab/nsp1150G150GggCggT11AY.980.000079
ORF1ab/nsp1150G150GggCggT11B0.000128
ORF1ab/nsp1150G150GggCggT11B.1.1.1760.000439
ORF1ab/nsp1150G150GggCggT11B.1.1.2770.000759
ORF1ab/nsp1150G150GggCggT11B.1.1.4130.006897
ORF1ab/nsp1150G150GggCggT11B.1.1.5070.008696
ORF1ab/nsp1150G150GggCggT11B.1.1110.001175
ORF1ab/nsp1150G150GggCggT11B.1.1600.000031
ORF1ab/nsp1150G150GggCggT11B.1.177.210.000076
ORF1ab/nsp1150G150GggCggG11B.1.177.320.00135
ORF1ab/nsp1150G150GggCggT11B.1.177.810.000189
ORF1ab/nsp1150G150GggCggT11B.1.2580.000067
ORF1ab/nsp1150G150GggCggT11B.1.2600.003344
ORF1ab/nsp1150G150GggCggT11B.1.4000.000429
ORF1ab/nsp1150G150GggCggT11B.1.5210.004975
ORF1ab/nsp1150G150GggCggT11B.1.5750.000303
ORF1ab/nsp1150G150GggCggT11B.1.6210.000089
ORF1ab/nsp1150G150GggCggT11B.1.6250.002353
ORF1ab/nsp1150G150GggCggT11C.360.000911
ORF1ab/nsp1150G150GggCggT11P.1.40.000977
ORF1ab/nsp1150G150GggCggT11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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