CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 70 | F70F | F70F | syn | ttC | ttT | 1596 | 1596 | 1 | 473-475 |
Details of the mutation F70F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1596 | 1596 | All | 0.000305 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 319 | 319 | AY.44 | 0.001942 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 223 | 223 | P.1 | 0.003513 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 172 | 172 | B.1.1.7 | 0.000154 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 172 | 172 | B.1.337 | 0.960894 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 90 | 90 | B.1.177 | 0.001185 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 73 | 73 | B.1.258 | 0.004858 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 56 | 56 | B.1.2 | 0.000493 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 45 | 45 | AY.43 | 0.000199 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 42 | 42 | B.1.617.2 | 0.000158 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 39 | 39 | AY.4 | 0.000061 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 32 | 32 | B.1 | 0.000293 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 18 | 18 | AY.47 | 0.00056 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 18 | 18 | B.1.1 | 0.000327 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 13 | 13 | B.1.160 | 0.000405 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 13 | 13 | B.1.389 | 0.013026 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 12 | 12 | AY.25 | 0.000072 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 10 | 10 | C.37 | 0.001161 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 9 | 9 | B.1.1.397 | 0.02027 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 9 | 9 | B.1.258.17 | 0.000936 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 9 | 9 | B.1.396 | 0.006351 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 8 | 8 | B.1.240 | 0.001725 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 7 | 7 | AY.74 | 0.00081 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 7 | 7 | B.1.1.421 | 0.212121 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 7 | 7 | B.1.588 | 0.006369 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 7 | 7 | C.26 | 0.051471 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 4 | 4 | B.1.1.25 | 0.002274 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 4 | 4 | B.1.346 | 0.005242 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 4 | 4 | B.1.621.1 | 0.002023 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 3 | 3 | B.1.456 | 0.009804 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 2 | 2 | AY.97 | 0.003401 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 2 | 2 | B.1.408 | 0.00738 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 2 | 2 | B.1.625 | 0.004706 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.158 | 0.02381 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | P.5 | 0.013699 |
ORF1ab/nsp1 | 70 | F70F | ttC | ttT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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