CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = D33Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp133D33YD33YnonsynGacTac3073060.996743362-364
ORF1ab/nsp133D33YD33YnonsynGaCTaT30710.00325733362-364

Details of the mutation D33Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp133D33YGacTac306307All0.000059
ORF1ab/nsp133D33YGaCTaT1307All0
ORF1ab/nsp133D33YGacTac8686B.1.1.70.000077
ORF1ab/nsp133D33YGacTac7979AY.40.000123
ORF1ab/nsp133D33YGacTac1414B.1.177.770.010167
ORF1ab/nsp133D33YGacTac1212B.1.617.20.000045
ORF1ab/nsp133D33YGacTac1111B.10.000101
ORF1ab/nsp133D33YGacTac1111B.1.1.5190.000437
ORF1ab/nsp133D33YGacTac1010AY.440.000061
ORF1ab/nsp133D33YGacTac1010AY.610.001048
ORF1ab/nsp133D33YGacTac66AY.250.000036
ORF1ab/nsp133D33YGacTac55AY.30.00005
ORF1ab/nsp133D33YGacTac44AY.560.006421
ORF1ab/nsp133D33YGacTac44B.1.10.000073
ORF1ab/nsp133D33YGacTac44B.1.20.000035
ORF1ab/nsp133D33YGacTac44P.1.140.000191
ORF1ab/nsp133D33YGacTac33AE.10.034091
ORF1ab/nsp133D33YGacTac33AY.390.000074
ORF1ab/nsp133D33YGacTac33AY.430.000013
ORF1ab/nsp133D33YGacTac33B.1.1.4480.006098
ORF1ab/nsp133D33YGacTac33B.1.1770.00004
ORF1ab/nsp133D33YGacTac22AY.1020.000053
ORF1ab/nsp133D33YGacTac22AY.39.10.000079
ORF1ab/nsp133D33YGacTac22B.1.1600.000062
ORF1ab/nsp133D33YGacTac22P.10.000032
ORF1ab/nsp133D33YGacTac11AY.100.00053
ORF1ab/nsp133D33YGacTac11AY.1000.000046
ORF1ab/nsp133D33YGacTac11AY.1030.000006
ORF1ab/nsp133D33YGacTac11AY.1190.000035
ORF1ab/nsp133D33YGacTac11AY.150.002222
ORF1ab/nsp133D33YGacTac11AY.260.000028
ORF1ab/nsp133D33YGacTac11AY.290.000016
ORF1ab/nsp133D33YGacTac11AY.50.000021
ORF1ab/nsp133D33YGaCTaT11AY.690.000187
ORF1ab/nsp133D33YGacTac11AY.720.001361
ORF1ab/nsp133D33YGacTac11AY.850.000427
ORF1ab/nsp133D33YGacTac11AY.980.000079
ORF1ab/nsp133D33YGacTac11B.1.1.1530.001095
ORF1ab/nsp133D33YGacTac11B.1.1.2140.000055
ORF1ab/nsp133D33YGacTac11B.1.177.120.000152
ORF1ab/nsp133D33YGacTac11B.1.2340.000132
ORF1ab/nsp133D33YGacTac11B.1.2580.000067
ORF1ab/nsp133D33YGacTac11B.1.4290.000024
ORF1ab/nsp133D33YGacTac11B.1.4710.002732
ORF1ab/nsp133D33YGacTac11B.1.5260.000024
ORF1ab/nsp133D33YGacTac11B.1.5650.00081
ORF1ab/nsp133D33YGacTac11B.1.5960.000087
ORF1ab/nsp133D33YGacTac11B.1.6020.006536
ORF1ab/nsp133D33YGacTac11B.60.00091

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.