CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 156 | D156D | D156D | syn | gaT | gaC | 114849 | 114849 | 1 | 731-733 |
Details of the mutation D156D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 114849 | 114849 | All | 0.021966 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 62866 | 62866 | P.1 | 0.99039 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 20877 | 20877 | P.1.14 | 0.997945 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 6158 | 6158 | P.1.17 | 0.996118 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 4271 | 4271 | P.1.15 | 0.992333 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3698 | 3698 | P.1.10 | 0.996497 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3117 | 3117 | P.1.7 | 0.995211 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3064 | 3064 | P.1.1 | 0.973316 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2601 | 2601 | P.1.16 | 0.973064 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1944 | 1944 | P.1.12 | 0.940949 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1143 | 1143 | P.1.17.1 | 1 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1101 | 1101 | P.1.13 | 0.989218 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1023 | 1023 | P.1.4 | 0.999023 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 864 | 864 | P.1.2 | 0.998844 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 513 | 513 | P.1.6 | 0.998054 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 209 | 209 | P.1.8 | 1 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 207 | 207 | P.1.9 | 0.995192 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 164 | 164 | AY.4 | 0.000255 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 114 | 114 | P.1.10.1 | 0.926829 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 104 | 104 | B.1 | 0.000953 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 98 | 98 | P.1.11 | 1 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 95 | 95 | B.1.1 | 0.001723 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 60 | 60 | B.1.1.7 | 0.000054 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 41 | 41 | AY.103 | 0.000255 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 38 | 38 | AY.43 | 0.000168 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 35 | 35 | B.1.617.2 | 0.000132 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 34 | 34 | AY.44 | 0.000207 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 33 | 33 | C.37 | 0.00383 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 29 | 29 | P.1.3 | 1 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 24 | 24 | P.1.10.2 | 1 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 22 | 22 | AY.6 | 0.000905 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 21 | 21 | B.1.596 | 0.00183 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 18 | 18 | B.1.1.28 | 0.005602 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 13 | 13 | B.1.1.528 | 0.0625 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 13 | 13 | P.1.5 | 1 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 10 | 10 | A.2.5 | 0.00499 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 10 | 10 | B.1.1.306 | 0.004384 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 8 | 8 | AY.72 | 0.010884 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 8 | 8 | C.37.1 | 0.020942 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 8 | 8 | Q.1 | 0.001011 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 7 | 7 | B.1.427 | 0.000353 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 5 | 5 | B.1.1.507 | 0.043478 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 4 | 4 | B | 0.000511 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 4 | 4 | B.1.349 | 0.002859 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | B.1.1.372 | 0.002066 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | B.1.1.409 | 0.008499 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.179 | 0.007519 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.636 | 0.013423 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.528 | 0.047619 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | P.4 | 0.003802 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | P.7 | 0.004367 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|