CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = D156D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1156D156DD156DsyngaTgaC1148491148491731-733

Details of the mutation D156D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1156D156DgaTgaC114849114849All0.021966
ORF1ab/nsp1156D156DgaTgaC6286662866P.10.99039
ORF1ab/nsp1156D156DgaTgaC2087720877P.1.140.997945
ORF1ab/nsp1156D156DgaTgaC61586158P.1.170.996118
ORF1ab/nsp1156D156DgaTgaC42714271P.1.150.992333
ORF1ab/nsp1156D156DgaTgaC36983698P.1.100.996497
ORF1ab/nsp1156D156DgaTgaC31173117P.1.70.995211
ORF1ab/nsp1156D156DgaTgaC30643064P.1.10.973316
ORF1ab/nsp1156D156DgaTgaC26012601P.1.160.973064
ORF1ab/nsp1156D156DgaTgaC19441944P.1.120.940949
ORF1ab/nsp1156D156DgaTgaC11431143P.1.17.11
ORF1ab/nsp1156D156DgaTgaC11011101P.1.130.989218
ORF1ab/nsp1156D156DgaTgaC10231023P.1.40.999023
ORF1ab/nsp1156D156DgaTgaC864864P.1.20.998844
ORF1ab/nsp1156D156DgaTgaC513513P.1.60.998054
ORF1ab/nsp1156D156DgaTgaC209209P.1.81
ORF1ab/nsp1156D156DgaTgaC207207P.1.90.995192
ORF1ab/nsp1156D156DgaTgaC164164AY.40.000255
ORF1ab/nsp1156D156DgaTgaC114114P.1.10.10.926829
ORF1ab/nsp1156D156DgaTgaC104104B.10.000953
ORF1ab/nsp1156D156DgaTgaC9898P.1.111
ORF1ab/nsp1156D156DgaTgaC9595B.1.10.001723
ORF1ab/nsp1156D156DgaTgaC6060B.1.1.70.000054
ORF1ab/nsp1156D156DgaTgaC4141AY.1030.000255
ORF1ab/nsp1156D156DgaTgaC3838AY.430.000168
ORF1ab/nsp1156D156DgaTgaC3535B.1.617.20.000132
ORF1ab/nsp1156D156DgaTgaC3434AY.440.000207
ORF1ab/nsp1156D156DgaTgaC3333C.370.00383
ORF1ab/nsp1156D156DgaTgaC2929P.1.31
ORF1ab/nsp1156D156DgaTgaC2424P.1.10.21
ORF1ab/nsp1156D156DgaTgaC2222AY.60.000905
ORF1ab/nsp1156D156DgaTgaC2121B.1.5960.00183
ORF1ab/nsp1156D156DgaTgaC1818B.1.1.280.005602
ORF1ab/nsp1156D156DgaTgaC1414B.1.1600.000437
ORF1ab/nsp1156D156DgaTgaC1313B.1.1.5280.0625
ORF1ab/nsp1156D156DgaTgaC1313P.1.51
ORF1ab/nsp1156D156DgaTgaC1010A.2.50.00499
ORF1ab/nsp1156D156DgaTgaC1010B.1.1.3060.004384
ORF1ab/nsp1156D156DgaTgaC99AY.1190.000318
ORF1ab/nsp1156D156DgaTgaC88AY.720.010884
ORF1ab/nsp1156D156DgaTgaC88C.37.10.020942
ORF1ab/nsp1156D156DgaTgaC88Q.10.001011
ORF1ab/nsp1156D156DgaTgaC77AY.390.000173
ORF1ab/nsp1156D156DgaTgaC77B.1.4270.000353
ORF1ab/nsp1156D156DgaTgaC66AY.250.000036
ORF1ab/nsp1156D156DgaTgaC66B.1.6370.000438
ORF1ab/nsp1156D156DgaTgaC55B.1.1.5070.043478
ORF1ab/nsp1156D156DgaTgaC55B.1.5260.000118
ORF1ab/nsp1156D156DgaTgaC55P.20.000933
ORF1ab/nsp1156D156DgaTgaC55Q.80.000825
ORF1ab/nsp1156D156DgaTgaC44B0.000511
ORF1ab/nsp1156D156DgaTgaC44B.1.3490.002859
ORF1ab/nsp1156D156DgaTgaC44B.1.6210.000354
ORF1ab/nsp1156D156DgaTgaC33AY.230.000209
ORF1ab/nsp1156D156DgaTgaC33AY.30.00003
ORF1ab/nsp1156D156DgaTgaC33AY.330.0002
ORF1ab/nsp1156D156DgaTgaC33AY.50.000062
ORF1ab/nsp1156D156DgaTgaC33AY.75.10.000541
ORF1ab/nsp1156D156DgaTgaC33AY.99.20.000276
ORF1ab/nsp1156D156DgaTgaC33B.1.1.3720.002066
ORF1ab/nsp1156D156DgaTgaC33B.1.1.4090.008499
ORF1ab/nsp1156D156DgaTgaC33B.1.1.5190.000119
ORF1ab/nsp1156D156DgaTgaC33B.1.20.000026
ORF1ab/nsp1156D156DgaTgaC33B.1.2430.000209
ORF1ab/nsp1156D156DgaTgaC33B.1.3110.000824
ORF1ab/nsp1156D156DgaTgaC22AY.1000.000092
ORF1ab/nsp1156D156DgaTgaC22AY.1020.000053
ORF1ab/nsp1156D156DgaTgaC22AY.1170.000169
ORF1ab/nsp1156D156DgaTgaC22AY.1180.000125
ORF1ab/nsp1156D156DgaTgaC22AY.300.000791
ORF1ab/nsp1156D156DgaTgaC22AY.420.00008
ORF1ab/nsp1156D156DgaTgaC22AY.46.20.001271
ORF1ab/nsp1156D156DgaTgaC22AY.470.000062
ORF1ab/nsp1156D156DgaTgaC22AY.750.000112
ORF1ab/nsp1156D156DgaTgaC22B.1.1.3120.003824
ORF1ab/nsp1156D156DgaTgaC22B.1.1770.000026
ORF1ab/nsp1156D156DgaTgaC22B.1.177.70.00033
ORF1ab/nsp1156D156DgaTgaC22B.1.1790.007519
ORF1ab/nsp1156D156DgaTgaC22B.1.360.000292
ORF1ab/nsp1156D156DgaTgaC22B.1.4290.000047
ORF1ab/nsp1156D156DgaTgaC22B.1.6230.001073
ORF1ab/nsp1156D156DgaTgaC22B.1.6280.000705
ORF1ab/nsp1156D156DgaTgaC22B.1.6360.013423
ORF1ab/nsp1156D156DgaTgaC11AY.100.00053
ORF1ab/nsp1156D156DgaTgaC11AY.130.000161
ORF1ab/nsp1156D156DgaTgaC11AY.140.000088
ORF1ab/nsp1156D156DgaTgaC11AY.20.000356
ORF1ab/nsp1156D156DgaTgaC11AY.200.000039
ORF1ab/nsp1156D156DgaTgaC11AY.260.000028
ORF1ab/nsp1156D156DgaTgaC11AY.4.40.000409
ORF1ab/nsp1156D156DgaTgaC11AY.450.000122
ORF1ab/nsp1156D156DgaTgaC11AY.540.000095
ORF1ab/nsp1156D156DgaTgaC11AY.590.00053
ORF1ab/nsp1156D156DgaTgaC11AY.790.001211
ORF1ab/nsp1156D156DgaTgaC11AY.950.000761
ORF1ab/nsp1156D156DgaTgaC11B.1.1.10.000327
ORF1ab/nsp1156D156DgaTgaC11B.1.1.100.001115
ORF1ab/nsp1156D156DgaTgaC11B.1.1.1610.003534
ORF1ab/nsp1156D156DgaTgaC11B.1.1.2200.001859
ORF1ab/nsp1156D156DgaTgaC11B.1.1.540.003021
ORF1ab/nsp1156D156DgaTgaC11B.1.177.40.000211
ORF1ab/nsp1156D156DgaTgaC11B.1.2140.003663
ORF1ab/nsp1156D156DgaTgaC11B.1.214.20.0006
ORF1ab/nsp1156D156DgaTgaC11B.1.2210.000071
ORF1ab/nsp1156D156DgaTgaC11B.1.2580.000067
ORF1ab/nsp1156D156DgaTgaC11B.1.3510.00003
ORF1ab/nsp1156D156DgaTgaC11B.1.3690.000285
ORF1ab/nsp1156D156DgaTgaC11B.1.4150.014286
ORF1ab/nsp1156D156DgaTgaC11B.1.5280.047619
ORF1ab/nsp1156D156DgaTgaC11B.1.5330.009615
ORF1ab/nsp1156D156DgaTgaC11B.1.5380.008065
ORF1ab/nsp1156D156DgaTgaC11B.1.5650.00081
ORF1ab/nsp1156D156DgaTgaC11B.1.6090.000479
ORF1ab/nsp1156D156DgaTgaC11B.1.6200.000946
ORF1ab/nsp1156D156DgaTgaC11B.1.6270.00202
ORF1ab/nsp1156D156DgaTgaC11C.390.018868
ORF1ab/nsp1156D156DgaTgaC11D.20.000075
ORF1ab/nsp1156D156DgaTgaC11N.40.004255
ORF1ab/nsp1156D156DgaTgaC11N.60.007092
ORF1ab/nsp1156D156DgaTgaC11N.90.005952
ORF1ab/nsp1156D156DgaTgaC11P.30.001595
ORF1ab/nsp1156D156DgaTgaC11P.40.003802
ORF1ab/nsp1156D156DgaTgaC11P.70.004367

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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