CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = D147D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1147D147DD147DsyngaCgaT248224821704-706

Details of the mutation D147D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1147D147DgaCgaT24822482All0.000475
ORF1ab/nsp1147D147DgaCgaT11921192B.1.1.70.001067
ORF1ab/nsp1147D147DgaCgaT207207AY.440.00126
ORF1ab/nsp1147D147DgaCgaT9494AY.40.000146
ORF1ab/nsp1147D147DgaCgaT7474B.1.617.20.000279
ORF1ab/nsp1147D147DgaCgaT6969B.1.1600.002152
ORF1ab/nsp1147D147DgaCgaT6969B.1.20.000608
ORF1ab/nsp1147D147DgaCgaT5353B.10.000485
ORF1ab/nsp1147D147DgaCgaT4646AY.250.000277
ORF1ab/nsp1147D147DgaCgaT4646B.1.5260.001081
ORF1ab/nsp1147D147DgaCgaT3636B.1.1.2840.003866
ORF1ab/nsp1147D147DgaCgaT3535B.1.1770.000461
ORF1ab/nsp1147D147DgaCgaT3232AY.430.000142
ORF1ab/nsp1147D147DgaCgaT2626B.1.5250.002942
ORF1ab/nsp1147D147DgaCgaT2424AY.1030.000149
ORF1ab/nsp1147D147DgaCgaT1818AY.1170.001521
ORF1ab/nsp1147D147DgaCgaT1717B.1.4290.0004
ORF1ab/nsp1147D147DgaCgaT1616AY.4.20.000347
ORF1ab/nsp1147D147DgaCgaT1212AY.9.20.000441
ORF1ab/nsp1147D147DgaCgaT1212B.1.2580.000799
ORF1ab/nsp1147D147DgaCgaT1212B.1.3510.000357
ORF1ab/nsp1147D147DgaCgaT1111AY.340.001067
ORF1ab/nsp1147D147DgaCgaT1111AY.420.000443
ORF1ab/nsp1147D147DgaCgaT1111B.1.4260.0111
ORF1ab/nsp1147D147DgaCgaT1111B.1.5960.000959
ORF1ab/nsp1147D147DgaCgaT1111P.10.000173
ORF1ab/nsp1147D147DgaCgaT1111P.1.70.003512
ORF1ab/nsp1147D147DgaCgaT1010B.1.2210.00071
ORF1ab/nsp1147D147DgaCgaT1010P.1.140.000478
ORF1ab/nsp1147D147DgaCgaT99AY.1000.000414
ORF1ab/nsp1147D147DgaCgaT99AY.29.10.001985
ORF1ab/nsp1147D147DgaCgaT99AY.30.00009
ORF1ab/nsp1147D147DgaCgaT99AY.7.20.005034
ORF1ab/nsp1147D147DgaCgaT88AY.98.10.000387
ORF1ab/nsp1147D147DgaCgaT88B.1.10.000145
ORF1ab/nsp1147D147DgaCgaT77AY.1020.000186
ORF1ab/nsp1147D147DgaCgaT77AY.120.002212
ORF1ab/nsp1147D147DgaCgaT77AY.260.000198
ORF1ab/nsp1147D147DgaCgaT77B.1.1.5280.033654
ORF1ab/nsp1147D147DgaCgaT77B.1.177.810.001325
ORF1ab/nsp1147D147DgaCgaT77B.1.5950.001827
ORF1ab/nsp1147D147DgaCgaT77B.1.6250.016471
ORF1ab/nsp1147D147DgaCgaT77Q.40.003183
ORF1ab/nsp1147D147DgaCgaT66AY.1210.000812
ORF1ab/nsp1147D147DgaCgaT66AY.450.00073
ORF1ab/nsp1147D147DgaCgaT66AY.470.000187
ORF1ab/nsp1147D147DgaCgaT66AY.90.000406
ORF1ab/nsp1147D147DgaCgaT66B.1.1.3180.001811
ORF1ab/nsp1147D147DgaCgaT66B.1.177.120.00091
ORF1ab/nsp1147D147DgaCgaT66Q.80.000989
ORF1ab/nsp1147D147DgaCgaT55AY.230.000349
ORF1ab/nsp1147D147DgaCgaT55AY.390.000124
ORF1ab/nsp1147D147DgaCgaT55AY.99.20.000461
ORF1ab/nsp1147D147DgaCgaT44AY.1180.000251
ORF1ab/nsp1147D147DgaCgaT44AY.330.000267
ORF1ab/nsp1147D147DgaCgaT44B.1.1.700.001364
ORF1ab/nsp1147D147DgaCgaT44B.1.2430.000278
ORF1ab/nsp1147D147DgaCgaT44P.1.150.000929
ORF1ab/nsp1147D147DgaCgaT33AY.1190.000106
ORF1ab/nsp1147D147DgaCgaT33AY.300.001187
ORF1ab/nsp1147D147DgaCgaT33AY.4.50.000322
ORF1ab/nsp1147D147DgaCgaT33AY.460.000312
ORF1ab/nsp1147D147DgaCgaT33AY.60.000123
ORF1ab/nsp1147D147DgaCgaT33B.1.1.280.000934
ORF1ab/nsp1147D147DgaCgaT33B.1.1.4870.01676
ORF1ab/nsp1147D147DgaCgaT33B.1.1.5190.000119
ORF1ab/nsp1147D147DgaCgaT33B.1.177.840.02
ORF1ab/nsp1147D147DgaCgaT33B.1.258.170.000312
ORF1ab/nsp1147D147DgaCgaT33B.1.5820.001472
ORF1ab/nsp1147D147DgaCgaT22AY.1110.000366
ORF1ab/nsp1147D147DgaCgaT22AY.1130.000285
ORF1ab/nsp1147D147DgaCgaT22AY.1200.000074
ORF1ab/nsp1147D147DgaCgaT22AY.270.000129
ORF1ab/nsp1147D147DgaCgaT22AY.290.000032
ORF1ab/nsp1147D147DgaCgaT22AY.3.10.000171
ORF1ab/nsp1147D147DgaCgaT22AY.350.000466
ORF1ab/nsp1147D147DgaCgaT22AY.4.40.000818
ORF1ab/nsp1147D147DgaCgaT22AY.46.20.001271
ORF1ab/nsp1147D147DgaCgaT22AY.46.60.000144
ORF1ab/nsp1147D147DgaCgaT22AY.480.00093
ORF1ab/nsp1147D147DgaCgaT22AY.750.000112
ORF1ab/nsp1147D147DgaCgaT22B.1.1.2200.003717
ORF1ab/nsp1147D147DgaCgaT22B.1.1.3850.008929
ORF1ab/nsp1147D147DgaCgaT22B.1.1.4480.004065
ORF1ab/nsp1147D147DgaCgaT22B.1.177.100.001756
ORF1ab/nsp1147D147DgaCgaT22B.1.4380.013072
ORF1ab/nsp1147D147DgaCgaT22B.30.001661
ORF1ab/nsp1147D147DgaCgaT22C.360.001821
ORF1ab/nsp1147D147DgaCgaT11A.2.20.001689
ORF1ab/nsp1147D147DgaCgaT11AY.1040.001984
ORF1ab/nsp1147D147DgaCgaT11AY.1140.000231
ORF1ab/nsp1147D147DgaCgaT11AY.130.000161
ORF1ab/nsp1147D147DgaCgaT11AY.200.000039
ORF1ab/nsp1147D147DgaCgaT11AY.360.000148
ORF1ab/nsp1147D147DgaCgaT11AY.39.10.00004
ORF1ab/nsp1147D147DgaCgaT11AY.39.20.001541
ORF1ab/nsp1147D147DgaCgaT11AY.46.40.000165
ORF1ab/nsp1147D147DgaCgaT11AY.520.000814
ORF1ab/nsp1147D147DgaCgaT11AY.530.000288
ORF1ab/nsp1147D147DgaCgaT11AY.550.000917
ORF1ab/nsp1147D147DgaCgaT11AY.610.000105
ORF1ab/nsp1147D147DgaCgaT11AY.740.000116
ORF1ab/nsp1147D147DgaCgaT11AY.75.10.00018
ORF1ab/nsp1147D147DgaCgaT11AY.840.000437
ORF1ab/nsp1147D147DgaCgaT11AY.850.000427
ORF1ab/nsp1147D147DgaCgaT11AY.880.000884
ORF1ab/nsp1147D147DgaCgaT11AY.9.10.000084
ORF1ab/nsp1147D147DgaCgaT11AY.910.00073
ORF1ab/nsp1147D147DgaCgaT11AY.980.000079
ORF1ab/nsp1147D147DgaCgaT11B0.000128
ORF1ab/nsp1147D147DgaCgaT11B.1.1.1230.017857
ORF1ab/nsp1147D147DgaCgaT11B.1.1.2220.000204
ORF1ab/nsp1147D147DgaCgaT11B.1.1.250.000569
ORF1ab/nsp1147D147DgaCgaT11B.1.1.2980.000862
ORF1ab/nsp1147D147DgaCgaT11B.1.1.3060.000438
ORF1ab/nsp1147D147DgaCgaT11B.1.1.3170.000412
ORF1ab/nsp1147D147DgaCgaT11B.1.1.390.00051
ORF1ab/nsp1147D147DgaCgaT11B.1.1.500.000679
ORF1ab/nsp1147D147DgaCgaT11B.1.177.150.000631
ORF1ab/nsp1147D147DgaCgaT11B.1.177.40.000211
ORF1ab/nsp1147D147DgaCgaT11B.1.177.570.000281
ORF1ab/nsp1147D147DgaCgaT11B.1.177.720.00339
ORF1ab/nsp1147D147DgaCgaT11B.1.2190.009434
ORF1ab/nsp1147D147DgaCgaT11B.1.2340.000132
ORF1ab/nsp1147D147DgaCgaT11B.1.351.30.000876
ORF1ab/nsp1147D147DgaCgaT11B.1.36.210.00216
ORF1ab/nsp1147D147DgaCgaT11B.1.36.380.001642
ORF1ab/nsp1147D147DgaCgaT11B.1.3690.000285
ORF1ab/nsp1147D147DgaCgaT11B.1.517.10.005263
ORF1ab/nsp1147D147DgaCgaT11B.1.5650.00081
ORF1ab/nsp1147D147DgaCgaT11B.1.6090.000479
ORF1ab/nsp1147D147DgaCgaT11B.1.6190.000871
ORF1ab/nsp1147D147DgaCgaT11B.1.6280.000352
ORF1ab/nsp1147D147DgaCgaT11B.1.6340.003425
ORF1ab/nsp1147D147DgaCgaT11B.1.780.008547
ORF1ab/nsp1147D147DgaCgaT11D.50.004975
ORF1ab/nsp1147D147DgaCgaT11P.20.000187
ORF1ab/nsp1147D147DgaCgaT11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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