CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 131 | A131A | A131A | syn | gcT | gcC | 970 | 795 | 0.819588 | 656-658 |
ORF1ab/nsp1 | 131 | A131A | A131A | syn | gcT | gcA | 970 | 118 | 0.121649 | 656-658 |
ORF1ab/nsp1 | 131 | A131A | A131A | syn | gcT | gcG | 970 | 57 | 0.0587629 | 656-658 |
Details of the mutation A131A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 795 | 970 | All | 0.000152 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 118 | 970 | All | 0.000023 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcG | 57 | 970 | All | 0.000011 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 306 | 310 | AY.4 | 0.000476 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcG | 2 | 310 | AY.4 | 0.000003 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 2 | 310 | AY.4 | 0.000003 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 83 | 83 | B.1.8 | 0.163708 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 64 | 77 | B.1.1.7 | 0.000057 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcG | 11 | 77 | B.1.1.7 | 0.00001 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 2 | 77 | B.1.1.7 | 0.000002 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 57 | 67 | AY.25 | 0.000343 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 10 | 67 | AY.25 | 0.00006 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 63 | 63 | AY.4.5 | 0.006772 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcG | 27 | 46 | AY.103 | 0.000168 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 19 | 46 | AY.103 | 0.000118 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 35 | 35 | B.1.556 | 0.263158 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 26 | 28 | B.1.617.2 | 0.000098 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 28 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcG | 1 | 28 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 14 | 14 | AY.37 | 0.004425 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 13 | 13 | AY.29 | 0.000205 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 13 | 13 | B.1.160 | 0.000405 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 12 | 12 | AE.2 | 0.705882 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 11 | 12 | AY.117 | 0.00093 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 12 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 11 | 11 | AY.99.2 | 0.001014 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 9 | 11 | B.1 | 0.000082 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcG | 1 | 11 | B.1 | 0.000009 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 11 | B.1 | 0.000009 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 6 | 10 | B.1.2 | 0.000053 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcG | 3 | 10 | B.1.2 | 0.000026 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 10 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 6 | 7 | AY.39 | 0.000148 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcG | 1 | 7 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 4 | 7 | AY.4.2 | 0.000087 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 3 | 7 | AY.4.2 | 0.000065 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 6 | 6 | AY.3.1 | 0.000512 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 4 | 6 | AY.43 | 0.000018 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcG | 2 | 6 | AY.43 | 0.000009 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 3 | 5 | 0.166667 | |
ORF1ab/nsp1 | 131 | A131A | gcT | gcG | 2 | 5 | 0.111111 | |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 4 | 5 | AY.47 | 0.000124 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 5 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 3 | 4 | AY.44 | 0.000018 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 4 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 3 | 4 | B.1.221 | 0.000213 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 4 | B.1.221 | 0.000071 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 2 | 4 | B.1.596 | 0.000174 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 4 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcG | 1 | 4 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 3 | 3 | B.1.416 | 0.003807 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 2 | 3 | B.1.427 | 0.000101 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 3 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 2 | 3 | B.1.429 | 0.000047 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcG | 1 | 3 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 3 | 3 | B.6 | 0.00273 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 2 | 2 | B.1.160.8 | 0.002577 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcG | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcG | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 2 | 2 | B.6.1 | 0.052632 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 2 | C.37 | 0.000116 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 2 | C.37 | 0.000116 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 2 | 2 | P.6 | 0.006289 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcG | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp1 | 131 | A131A | gcT | gcC | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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