CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : Mut = A131A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1131A131AA131AsyngcTgcC9707950.819588656-658
ORF1ab/nsp1131A131AA131AsyngcTgcA9701180.121649656-658
ORF1ab/nsp1131A131AA131AsyngcTgcG970570.0587629656-658

Details of the mutation A131A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1131A131AgcTgcC795970All0.000152
ORF1ab/nsp1131A131AgcTgcA118970All0.000023
ORF1ab/nsp1131A131AgcTgcG57970All0.000011
ORF1ab/nsp1131A131AgcTgcC306310AY.40.000476
ORF1ab/nsp1131A131AgcTgcG2310AY.40.000003
ORF1ab/nsp1131A131AgcTgcA2310AY.40.000003
ORF1ab/nsp1131A131AgcTgcC8383B.1.80.163708
ORF1ab/nsp1131A131AgcTgcC6477B.1.1.70.000057
ORF1ab/nsp1131A131AgcTgcG1177B.1.1.70.00001
ORF1ab/nsp1131A131AgcTgcA277B.1.1.70.000002
ORF1ab/nsp1131A131AgcTgcA5767AY.250.000343
ORF1ab/nsp1131A131AgcTgcC1067AY.250.00006
ORF1ab/nsp1131A131AgcTgcC6363AY.4.50.006772
ORF1ab/nsp1131A131AgcTgcG2746AY.1030.000168
ORF1ab/nsp1131A131AgcTgcC1946AY.1030.000118
ORF1ab/nsp1131A131AgcTgcA3535B.1.5560.263158
ORF1ab/nsp1131A131AgcTgcC2628B.1.617.20.000098
ORF1ab/nsp1131A131AgcTgcA128B.1.617.20.000004
ORF1ab/nsp1131A131AgcTgcG128B.1.617.20.000004
ORF1ab/nsp1131A131AgcTgcC1414AY.370.004425
ORF1ab/nsp1131A131AgcTgcC1313AY.290.000205
ORF1ab/nsp1131A131AgcTgcC1313B.1.1600.000405
ORF1ab/nsp1131A131AgcTgcC1212AE.20.705882
ORF1ab/nsp1131A131AgcTgcC1112AY.1170.00093
ORF1ab/nsp1131A131AgcTgcA112AY.1170.000085
ORF1ab/nsp1131A131AgcTgcC1111AY.99.20.001014
ORF1ab/nsp1131A131AgcTgcC911B.10.000082
ORF1ab/nsp1131A131AgcTgcG111B.10.000009
ORF1ab/nsp1131A131AgcTgcA111B.10.000009
ORF1ab/nsp1131A131AgcTgcC610B.1.20.000053
ORF1ab/nsp1131A131AgcTgcG310B.1.20.000026
ORF1ab/nsp1131A131AgcTgcA110B.1.20.000009
ORF1ab/nsp1131A131AgcTgcC88B.1.1770.000105
ORF1ab/nsp1131A131AgcTgcC67AY.390.000148
ORF1ab/nsp1131A131AgcTgcG17AY.390.000025
ORF1ab/nsp1131A131AgcTgcC47AY.4.20.000087
ORF1ab/nsp1131A131AgcTgcA37AY.4.20.000065
ORF1ab/nsp1131A131AgcTgcC66AY.30.00006
ORF1ab/nsp1131A131AgcTgcC66AY.3.10.000512
ORF1ab/nsp1131A131AgcTgcC46AY.430.000018
ORF1ab/nsp1131A131AgcTgcG26AY.430.000009
ORF1ab/nsp1131A131AgcTgcC350.166667
ORF1ab/nsp1131A131AgcTgcG250.111111
ORF1ab/nsp1131A131AgcTgcC45AY.470.000124
ORF1ab/nsp1131A131AgcTgcA15AY.470.000031
ORF1ab/nsp1131A131AgcTgcC55B.1.10.000091
ORF1ab/nsp1131A131AgcTgcC44AY.1020.000106
ORF1ab/nsp1131A131AgcTgcC34AY.440.000018
ORF1ab/nsp1131A131AgcTgcA14AY.440.000006
ORF1ab/nsp1131A131AgcTgcC44AY.50.000083
ORF1ab/nsp1131A131AgcTgcC34B.1.2210.000213
ORF1ab/nsp1131A131AgcTgcA14B.1.2210.000071
ORF1ab/nsp1131A131AgcTgcC44B.1.2430.000278
ORF1ab/nsp1131A131AgcTgcC24B.1.5960.000174
ORF1ab/nsp1131A131AgcTgcA14B.1.5960.000087
ORF1ab/nsp1131A131AgcTgcG14B.1.5960.000087
ORF1ab/nsp1131A131AgcTgcC44B.1.6210.000354
ORF1ab/nsp1131A131AgcTgcC33AY.1110.000549
ORF1ab/nsp1131A131AgcTgcC33B.1.177.810.000568
ORF1ab/nsp1131A131AgcTgcC33B.1.4160.003807
ORF1ab/nsp1131A131AgcTgcC23B.1.4270.000101
ORF1ab/nsp1131A131AgcTgcA13B.1.4270.00005
ORF1ab/nsp1131A131AgcTgcC23B.1.4290.000047
ORF1ab/nsp1131A131AgcTgcG13B.1.4290.000024
ORF1ab/nsp1131A131AgcTgcC33B.60.00273
ORF1ab/nsp1131A131AgcTgcC22AY.200.000078
ORF1ab/nsp1131A131AgcTgcC22AY.750.000112
ORF1ab/nsp1131A131AgcTgcC22B.1.160.80.002577
ORF1ab/nsp1131A131AgcTgcG22B.1.360.000292
ORF1ab/nsp1131A131AgcTgcG22B.1.3980.005952
ORF1ab/nsp1131A131AgcTgcC22B.1.621.10.001012
ORF1ab/nsp1131A131AgcTgcC22B.6.10.052632
ORF1ab/nsp1131A131AgcTgcC12C.370.000116
ORF1ab/nsp1131A131AgcTgcA12C.370.000116
ORF1ab/nsp1131A131AgcTgcC22P.10.000032
ORF1ab/nsp1131A131AgcTgcC22P.1.10.000635
ORF1ab/nsp1131A131AgcTgcC22P.20.000373
ORF1ab/nsp1131A131AgcTgcC22P.60.006289
ORF1ab/nsp1131A131AgcTgcA11A.10.000282
ORF1ab/nsp1131A131AgcTgcC11A.23.10.000704
ORF1ab/nsp1131A131AgcTgcC11AY.1000.000046
ORF1ab/nsp1131A131AgcTgcA11AY.1010.00049
ORF1ab/nsp1131A131AgcTgcC11AY.1080.001103
ORF1ab/nsp1131A131AgcTgcC11AY.1180.000063
ORF1ab/nsp1131A131AgcTgcC11AY.1190.000035
ORF1ab/nsp1131A131AgcTgcC11AY.260.000028
ORF1ab/nsp1131A131AgcTgcC11AY.4.30.000842
ORF1ab/nsp1131A131AgcTgcC11AY.420.00004
ORF1ab/nsp1131A131AgcTgcC11AY.60.000041
ORF1ab/nsp1131A131AgcTgcC11AY.7.10.000113
ORF1ab/nsp1131A131AgcTgcG11AY.710.000475
ORF1ab/nsp1131A131AgcTgcA11AY.75.10.00018
ORF1ab/nsp1131A131AgcTgcC11AY.80.000606
ORF1ab/nsp1131A131AgcTgcC11AY.840.000437
ORF1ab/nsp1131A131AgcTgcA11AY.920.000287
ORF1ab/nsp1131A131AgcTgcC11B.1.1.2200.001859
ORF1ab/nsp1131A131AgcTgcC11B.1.1.4340.000349
ORF1ab/nsp1131A131AgcTgcA11B.1.177.120.000152
ORF1ab/nsp1131A131AgcTgcC11B.1.177.160.000664
ORF1ab/nsp1131A131AgcTgcC11B.1.177.210.000076
ORF1ab/nsp1131A131AgcTgcC11B.1.177.230.003236
ORF1ab/nsp1131A131AgcTgcC11B.1.177.70.000165
ORF1ab/nsp1131A131AgcTgcC11B.1.221.20.004016
ORF1ab/nsp1131A131AgcTgcA11B.1.2340.000132
ORF1ab/nsp1131A131AgcTgcC11B.1.2580.000067
ORF1ab/nsp1131A131AgcTgcC11B.1.258.160.001637
ORF1ab/nsp1131A131AgcTgcC11B.1.3380.008621
ORF1ab/nsp1131A131AgcTgcA11B.1.3510.00003
ORF1ab/nsp1131A131AgcTgcA11B.1.36.80.001
ORF1ab/nsp1131A131AgcTgcC11B.1.3710.001122
ORF1ab/nsp1131A131AgcTgcC11B.1.3970.004854
ORF1ab/nsp1131A131AgcTgcC11B.1.5250.000113
ORF1ab/nsp1131A131AgcTgcA11B.1.5260.000024
ORF1ab/nsp1131A131AgcTgcC11B.1.5740.002151
ORF1ab/nsp1131A131AgcTgcC11B.1.5820.000491
ORF1ab/nsp1131A131AgcTgcC11B.6.60.000889
ORF1ab/nsp1131A131AgcTgcC11P.1.130.000898
ORF1ab/nsp1131A131AgcTgcC11Q.80.000165