CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 93 & Codon = gaC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp193E93DE93DnonsyngaAgaC8016330.790262542-544

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp193E93DgaAgaC633801All0.000121
ORF1ab/nsp193E93DgaAgaC493493B.1.4290.0116
ORF1ab/nsp193E93DgaAgaC31120B.1.1.70.000028
ORF1ab/nsp193E93DgaAgaC1656AY.4.20.000347
ORF1ab/nsp193E93DgaAgaC1820AY.40.000028
ORF1ab/nsp193E93DgaAgaC1818AY.1030.000112
ORF1ab/nsp193E93DgaAgaC99B.1.5250.001018
ORF1ab/nsp193E93DgaAgaC47B.10.000037
ORF1ab/nsp193E93DgaAgaC46AY.440.000024
ORF1ab/nsp193E93DgaAgaC55AY.290.000079
ORF1ab/nsp193E93DgaAgaC25AY.430.000009
ORF1ab/nsp193E93DgaAgaC44AY.4.50.00043
ORF1ab/nsp193E93DgaAgaC14B.1.10.000018
ORF1ab/nsp193E93DgaAgaC44B.1.1.5190.000159
ORF1ab/nsp193E93DgaAgaC14B.1.617.20.000004
ORF1ab/nsp193E93DgaAgaC33B.1.1.2200.005576
ORF1ab/nsp193E93DgaAgaC23B.1.4270.000101
ORF1ab/nsp193E93DgaAgaC22AY.1200.000074
ORF1ab/nsp193E93DgaAgaC22AY.30.00002
ORF1ab/nsp193E93DgaAgaC12AY.98.10.000048
ORF1ab/nsp193E93DgaAgaC11A.20.000662
ORF1ab/nsp193E93DgaAgaC11AY.3.10.000085
ORF1ab/nsp193E93DgaAgaC11AY.420.00004
ORF1ab/nsp193E93DgaAgaC11AY.99.20.000092
ORF1ab/nsp193E93DgaAgaC11B.1.2210.000071
ORF1ab/nsp193E93DgaAgaC11B.1.258.170.000104
ORF1ab/nsp193E93DgaAgaC11B.1.3110.000275
ORF1ab/nsp193E93DgaAgaC11B.1.4590.004082
ORF1ab/nsp193E93DgaAgaC11B.1.6210.000089
ORF1ab/nsp193E93DgaAgaC11B.1.621.10.000506
ORF1ab/nsp193E93DgaAgaC11B.1.6360.006711
ORF1ab/nsp193E93DgaAgaC11B.1.90.006173
ORF1ab/nsp193E93DgaAgaC11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.