CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 93 & Codon = gGa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp193E93GE93GnonsyngAagGa2182181542-544

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp193E93GgAagGa218218All0.000042
ORF1ab/nsp193E93GgAagGa6060B.1.1.10.019601
ORF1ab/nsp193E93GgAagGa4343AY.290.000678
ORF1ab/nsp193E93GgAagGa1818B.1.1.70.000016
ORF1ab/nsp193E93GgAagGa1515P.10.000236
ORF1ab/nsp193E93GgAagGa88AY.140.000704
ORF1ab/nsp193E93GgAagGa77AY.260.000198
ORF1ab/nsp193E93GgAagGa77B.1.617.20.000026
ORF1ab/nsp193E93GgAagGa66B.1.5170.002562
ORF1ab/nsp193E93GgAagGa55AY.250.00003
ORF1ab/nsp193E93GgAagGa44AY.440.000024
ORF1ab/nsp193E93GgAagGa44B.1.20.000035
ORF1ab/nsp193E93GgAagGa33AY.1030.000019
ORF1ab/nsp193E93GgAagGa33AY.230.000209
ORF1ab/nsp193E93GgAagGa220.111111
ORF1ab/nsp193E93GgAagGa22AY.240.000862
ORF1ab/nsp193E93GgAagGa22AY.29.10.000441
ORF1ab/nsp193E93GgAagGa22AY.40.000003
ORF1ab/nsp193E93GgAagGa22AY.4.20.000043
ORF1ab/nsp193E93GgAagGa22B.10.000018
ORF1ab/nsp193E93GgAagGa22B.1.1.3220.017544
ORF1ab/nsp193E93GgAagGa22B.1.2430.000139
ORF1ab/nsp193E93GgAagGa22B.1.4290.000047
ORF1ab/nsp193E93GgAagGa11AY.390.000025
ORF1ab/nsp193E93GgAagGa11AY.430.000004
ORF1ab/nsp193E93GgAagGa11AY.520.000814
ORF1ab/nsp193E93GgAagGa11AY.750.000056
ORF1ab/nsp193E93GgAagGa11AY.850.000427
ORF1ab/nsp193E93GgAagGa11B.1.10.000018
ORF1ab/nsp193E93GgAagGa11B.1.1.330.000421
ORF1ab/nsp193E93GgAagGa11B.1.1490.003425
ORF1ab/nsp193E93GgAagGa11B.1.1770.000013
ORF1ab/nsp193E93GgAagGa11B.1.177.100.000878
ORF1ab/nsp193E93GgAagGa11B.1.3510.00003
ORF1ab/nsp193E93GgAagGa11B.1.5960.000087
ORF1ab/nsp193E93GgAagGa11B.1.6210.000089
ORF1ab/nsp193E93GgAagGa11C.350.000774
ORF1ab/nsp193E93GgAagGa11C.360.000911
ORF1ab/nsp193E93GgAagGa11C.60.037037
ORF1ab/nsp193E93GgAagGa11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.