CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 91 | E91E | E91E | syn | gaA | gaG | 317 | 317 | 1 | 536-538 |
ORF1ab/nsp1 | 91 | E91K | E91K | nonsyn | Gaa | Aaa | 129 | 129 | 1 | 536-538 |
ORF1ab/nsp1 | 91 | E91del | E91del | del | GAA | --- | 83 | 83 | 1 | 536-538 |
ORF1ab/nsp1 | 91 | E91D | E91D | nonsyn | gaA | gaT | 37 | 29 | 0.783784 | 536-538 |
ORF1ab/nsp1 | 91 | E91D | E91D | nonsyn | gaA | gaC | 37 | 8 | 0.216216 | 536-538 |
ORF1ab/nsp1 | 91 | E91V | E91V | nonsyn | gAa | gTa | 31 | 25 | 0.806452 | 536-538 |
ORF1ab/nsp1 | 91 | E91V | E91V | nonsyn | gAA | gTT | 31 | 6 | 0.193548 | 536-538 |
ORF1ab/nsp1 | 91 | E91G | E91G | nonsyn | gAa | gGa | 26 | 26 | 1 | 536-538 |
ORF1ab/nsp1 | 91 | E91X | E91X | nonsyn | Gaa | Taa | 19 | 19 | 1 | 536-538 |
ORF1ab/nsp1 | 91 | E91A | E91A | nonsyn | gAa | gCa | 16 | 15 | 0.9375 | 536-538 |
ORF1ab/nsp1 | 91 | E91A | E91A | nonsyn | gAA | gCG | 16 | 1 | 0.0625 | 536-538 |
ORF1ab/nsp1 | 91 | E91Q | E91Q | nonsyn | Gaa | Caa | 13 | 13 | 1 | 536-538 |
ORF1ab/nsp1 | 91 | E91del1 | E91del1 | del | Gaa | -aa | 3 | 3 | 1 | 536-538 |
ORF1ab/nsp1 | 91 | E91R | E91R | nonsyn | GAA | AGG | 2 | 1 | 0.5 | 536-538 |
ORF1ab/nsp1 | 91 | E91R | E91R | nonsyn | GAa | AGa | 2 | 1 | 0.5 | 536-538 |
ORF1ab/nsp1 | 91 | E91P | E91P | nonsyn | GAa | CCa | 1 | 1 | 1 | 536-538 |
ORF1ab/nsp1 | 91 | E91del2 | E91del2 | del | gAA | g-- | 1 | 1 | 1 | 536-538 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 317 | 317 | All | 0.000061 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 129 | 129 | All | 0.000025 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 86 | 86 | B.1.335 | 0.886598 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 83 | 83 | All | 0.000016 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 46 | 46 | AY.4 | 0.000072 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 44 | 44 | B.1.177 | 0.000579 |
ORF1ab/nsp1 | 91 | E91D | gaA | gaT | 29 | 37 | All | 0.000006 |
ORF1ab/nsp1 | 91 | E91D | gaA | gaC | 8 | 37 | All | 0.000002 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 35 | 35 | B.1.429 | 0.000824 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 32 | 32 | AY.117 | 0.002705 |
ORF1ab/nsp1 | 91 | E91V | gAa | gTa | 25 | 31 | All | 0.000005 |
ORF1ab/nsp1 | 91 | E91V | gAA | gTT | 6 | 31 | All | 0.000001 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 29 | 29 | B.1 | 0.000266 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 26 | 26 | All | 0.000005 |
ORF1ab/nsp1 | 91 | E91X | Gaa | Taa | 19 | 19 | All | 0.000004 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 18 | 18 | AY.43 | 0.00008 |
ORF1ab/nsp1 | 91 | E91A | gAa | gCa | 15 | 16 | All | 0.000003 |
ORF1ab/nsp1 | 91 | E91A | gAA | gCG | 1 | 16 | All | 0 |
ORF1ab/nsp1 | 91 | E91D | gaA | gaT | 16 | 16 | B.1.1 | 0.00029 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp1 | 91 | E91Q | Gaa | Caa | 13 | 13 | All | 0.000002 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp1 | 91 | E91V | gAa | gTa | 9 | 9 | B | 0.00115 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp1 | 91 | E91D | gaA | gaT | 5 | 6 | B.1 | 0.000046 |
ORF1ab/nsp1 | 91 | E91D | gaA | gaC | 1 | 6 | B.1 | 0.000009 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp1 | 91 | E91V | gAa | gTa | 3 | 5 | B.1 | 0.000027 |
ORF1ab/nsp1 | 91 | E91V | gAA | gTT | 2 | 5 | B.1 | 0.000018 |
ORF1ab/nsp1 | 91 | E91X | Gaa | Taa | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp1 | 91 | E91Q | Gaa | Caa | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp1 | 91 | E91V | gAa | gTa | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp1 | 91 | E91V | gAA | gTT | 2 | 4 | B.6 | 0.00182 |
ORF1ab/nsp1 | 91 | E91V | gAa | gTa | 2 | 4 | B.6 | 0.00182 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp1 | 91 | E91del1 | Gaa | -aa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp1 | 91 | E91D | gaA | gaC | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp1 | 91 | E91A | gAa | gCa | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp1 | 91 | E91X | Gaa | Taa | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp1 | 91 | E91R | GAa | AGa | 1 | 2 | All | 0 |
ORF1ab/nsp1 | 91 | E91R | GAA | AGG | 1 | 2 | All | 0 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp1 | 91 | E91A | gAa | gCa | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp1 | 91 | E91V | gAa | gTa | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp1 | 91 | E91X | Gaa | Taa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 2 | 2 | B.1.131 | 0.017544 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp1 | 91 | E91Q | Gaa | Caa | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp1 | 91 | E91A | gAa | gCa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 91 | E91D | gaA | gaT | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp1 | 91 | E91X | Gaa | Taa | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp1 | 91 | E91V | gAA | gTT | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp1 | 91 | E91V | gAa | gTa | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | 0.055556 | |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 1 | 1 | 0.055556 | |
ORF1ab/nsp1 | 91 | E91R | GAa | AGa | 1 | 1 | 0.055556 | |
ORF1ab/nsp1 | 91 | E91D | gaA | gaT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp1 | 91 | E91D | gaA | gaT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp1 | 91 | E91P | GAa | CCa | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 91 | E91del2 | gAA | g-- | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 91 | E91A | gAa | gCa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 91 | E91D | gaA | gaC | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 91 | E91V | gAa | gTa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 91 | E91del1 | Gaa | -aa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 91 | E91Q | Gaa | Caa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 91 | E91A | gAa | gCa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp1 | 91 | E91Q | Gaa | Caa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 91 | E91A | gAa | gCa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 91 | E91A | gAA | gCG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 91 | E91D | gaA | gaC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp1 | 91 | E91V | gAa | gTa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp1 | 91 | E91X | Gaa | Taa | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 91 | E91A | gAa | gCa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 91 | E91X | Gaa | Taa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 91 | E91del1 | Gaa | -aa | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp1 | 91 | E91V | gAa | gTa | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp1 | 91 | E91R | GAA | AGG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp1 | 91 | E91del2 | gAA | g-- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 91 | E91D | gaA | gaT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 91 | E91X | Gaa | Taa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 91 | E91A | gAa | gCa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp1 | 91 | E91D | gaA | gaT | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp1 | 91 | E91X | Gaa | Taa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | B.1.211 | 0.025 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp1 | 91 | E91X | Gaa | Taa | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 91 | E91Q | Gaa | Caa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp1 | 91 | E91A | gAa | gCa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 91 | E91A | gAa | gCa | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 91 | E91Q | Gaa | Caa | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp1 | 91 | E91del1 | Gaa | -aa | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 91 | E91D | gaA | gaC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 91 | E91A | gAa | gCa | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp1 | 91 | E91X | Gaa | Taa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp1 | 91 | E91E | gaA | gaG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 91 | E91D | gaA | gaC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 91 | E91V | gAA | gTT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 91 | E91P | GAa | CCa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 91 | E91Q | Gaa | Caa | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp1 | 91 | E91X | Gaa | Taa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp1 | 91 | E91del | GAA | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 91 | E91D | gaA | gaT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp1 | 91 | E91G | gAa | gGa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 91 | E91Q | Gaa | Caa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 91 | E91D | gaA | gaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 91 | E91K | Gaa | Aaa | 1 | 1 | P.1 | 0.000016 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|