CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 91

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp191E91EE91EsyngaAgaG3173171536-538
ORF1ab/nsp191E91KE91KnonsynGaaAaa1291291536-538
ORF1ab/nsp191E91delE91deldelGAA---83831536-538
ORF1ab/nsp191E91DE91DnonsyngaAgaT37290.783784536-538
ORF1ab/nsp191E91DE91DnonsyngaAgaC3780.216216536-538
ORF1ab/nsp191E91VE91VnonsyngAagTa31250.806452536-538
ORF1ab/nsp191E91VE91VnonsyngAAgTT3160.193548536-538
ORF1ab/nsp191E91GE91GnonsyngAagGa26261536-538
ORF1ab/nsp191E91XE91XnonsynGaaTaa19191536-538
ORF1ab/nsp191E91AE91AnonsyngAagCa16150.9375536-538
ORF1ab/nsp191E91AE91AnonsyngAAgCG1610.0625536-538
ORF1ab/nsp191E91QE91QnonsynGaaCaa13131536-538
ORF1ab/nsp191E91del1E91del1delGaa-aa331536-538
ORF1ab/nsp191E91RE91RnonsynGAAAGG210.5536-538
ORF1ab/nsp191E91RE91RnonsynGAaAGa210.5536-538
ORF1ab/nsp191E91PE91PnonsynGAaCCa111536-538
ORF1ab/nsp191E91del2E91del2delgAAg--111536-538

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp191E91EgaAgaG317317All0.000061
ORF1ab/nsp191E91KGaaAaa129129All0.000025
ORF1ab/nsp191E91EgaAgaG8686B.1.3350.886598
ORF1ab/nsp191E91delGAA---8383All0.000016
ORF1ab/nsp191E91KGaaAaa4646AY.40.000072
ORF1ab/nsp191E91EgaAgaG4444B.1.1770.000579
ORF1ab/nsp191E91DgaAgaT2937All0.000006
ORF1ab/nsp191E91DgaAgaC837All0.000002
ORF1ab/nsp191E91EgaAgaG3535B.1.4290.000824
ORF1ab/nsp191E91EgaAgaG3232AY.1170.002705
ORF1ab/nsp191E91VgAagTa2531All0.000005
ORF1ab/nsp191E91VgAAgTT631All0.000001
ORF1ab/nsp191E91EgaAgaG2929B.10.000266
ORF1ab/nsp191E91GgAagGa2626All0.000005
ORF1ab/nsp191E91XGaaTaa1919All0.000004
ORF1ab/nsp191E91KGaaAaa1818AY.430.00008
ORF1ab/nsp191E91AgAagCa1516All0.000003
ORF1ab/nsp191E91AgAAgCG116All0
ORF1ab/nsp191E91DgaAgaT1616B.1.10.00029
ORF1ab/nsp191E91EgaAgaG1616B.1.1.70.000014
ORF1ab/nsp191E91QGaaCaa1313All0.000002
ORF1ab/nsp191E91delGAA---1313B.1.1.70.000012
ORF1ab/nsp191E91KGaaAaa1313B.1.617.20.000049
ORF1ab/nsp191E91EgaAgaG1212AY.430.000053
ORF1ab/nsp191E91KGaaAaa1010B.1.1.70.000009
ORF1ab/nsp191E91VgAagTa99B0.00115
ORF1ab/nsp191E91EgaAgaG88AY.60.000329
ORF1ab/nsp191E91EgaAgaG77AY.1030.000043
ORF1ab/nsp191E91delGAA---66AY.250.000036
ORF1ab/nsp191E91delGAA---66AY.40.000009
ORF1ab/nsp191E91DgaAgaT56B.10.000046
ORF1ab/nsp191E91DgaAgaC16B.10.000009
ORF1ab/nsp191E91KGaaAaa55AY.1020.000133
ORF1ab/nsp191E91EgaAgaG55AY.40.000008
ORF1ab/nsp191E91VgAagTa35B.10.000027
ORF1ab/nsp191E91VgAAgTT25B.10.000018
ORF1ab/nsp191E91XGaaTaa55B.1.1.70.000004
ORF1ab/nsp191E91QGaaCaa55B.1.1.70.000004
ORF1ab/nsp191E91VgAagTa55B.1.1.70.000004
ORF1ab/nsp191E91EgaAgaG55B.1.617.20.000019
ORF1ab/nsp191E91KGaaAaa44AY.1030.000025
ORF1ab/nsp191E91delGAA---44AY.430.000018
ORF1ab/nsp191E91delGAA---44B.1.1.330.001684
ORF1ab/nsp191E91delGAA---44B.1.1.3480.003185
ORF1ab/nsp191E91VgAAgTT24B.60.00182
ORF1ab/nsp191E91VgAagTa24B.60.00182
ORF1ab/nsp191E91EgaAgaG44P.10.000063
ORF1ab/nsp191E91del1Gaa-aa33All0.000001
ORF1ab/nsp191E91EgaAgaG33AY.250.000018
ORF1ab/nsp191E91GgAagGa33AY.40.000005
ORF1ab/nsp191E91DgaAgaC33AY.40.000005
ORF1ab/nsp191E91AgAagCa33AY.40.000005
ORF1ab/nsp191E91delGAA---33AY.4.50.000322
ORF1ab/nsp191E91GgAagGa33AY.440.000018
ORF1ab/nsp191E91KGaaAaa33AY.440.000018
ORF1ab/nsp191E91delGAA---33AY.440.000018
ORF1ab/nsp191E91GgAagGa33AY.9.20.00011
ORF1ab/nsp191E91delGAA---33B.1.20.000026
ORF1ab/nsp191E91EgaAgaG33B.1.2340.000396
ORF1ab/nsp191E91EgaAgaG33B.1.5260.000071
ORF1ab/nsp191E91XGaaTaa33B.1.617.20.000011
ORF1ab/nsp191E91RGAaAGa12All0
ORF1ab/nsp191E91RGAAAGG12All0
ORF1ab/nsp191E91KGaaAaa22AY.1190.000071
ORF1ab/nsp191E91EgaAgaG22AY.340.000194
ORF1ab/nsp191E91AgAagCa22AY.340.000194
ORF1ab/nsp191E91KGaaAaa22AY.390.000049
ORF1ab/nsp191E91EgaAgaG22AY.390.000049
ORF1ab/nsp191E91VgAagTa22AY.40.000003
ORF1ab/nsp191E91EgaAgaG22AY.50.000041
ORF1ab/nsp191E91KGaaAaa22B.10.000018
ORF1ab/nsp191E91XGaaTaa22B.10.000018
ORF1ab/nsp191E91GgAagGa22B.10.000018
ORF1ab/nsp191E91EgaAgaG22B.1.1310.017544
ORF1ab/nsp191E91delGAA---22B.1.1770.000026
ORF1ab/nsp191E91delGAA---22B.1.177.40.000422
ORF1ab/nsp191E91EgaAgaG22B.1.20.000018
ORF1ab/nsp191E91QGaaCaa22B.1.5250.000226
ORF1ab/nsp191E91AgAagCa22B.1.617.20.000008
ORF1ab/nsp191E91delGAA---22B.1.617.20.000008
ORF1ab/nsp191E91GgAagGa22B.1.617.20.000008
ORF1ab/nsp191E91DgaAgaT22B.60.00182
ORF1ab/nsp191E91XGaaTaa22D.20.00015
ORF1ab/nsp191E91VgAAgTT12D.20.000075
ORF1ab/nsp191E91VgAagTa12D.20.000075
ORF1ab/nsp191E91delGAA---22N.40.008511
ORF1ab/nsp191E91delGAA---22N.60.014184
ORF1ab/nsp191E91delGAA---22P.20.000373
ORF1ab/nsp191E91KGaaAaa110.055556
ORF1ab/nsp191E91GgAagGa110.055556
ORF1ab/nsp191E91RGAaAGa110.055556
ORF1ab/nsp191E91DgaAgaT11A.10.000282
ORF1ab/nsp191E91GgAagGa11A.10.000282
ORF1ab/nsp191E91DgaAgaT11A.20.000662
ORF1ab/nsp191E91PGAaCCa11All0
ORF1ab/nsp191E91del2gAAg--11All0
ORF1ab/nsp191E91AgAagCa11AY.1020.000027
ORF1ab/nsp191E91EgaAgaG11AY.1020.000027
ORF1ab/nsp191E91GgAagGa11AY.1030.000006
ORF1ab/nsp191E91KGaaAaa11AY.1070.000466
ORF1ab/nsp191E91delGAA---11AY.1160.000287
ORF1ab/nsp191E91delGAA---11AY.120.000316
ORF1ab/nsp191E91GgAagGa11AY.120.000316
ORF1ab/nsp191E91EgaAgaG11AY.200.000039
ORF1ab/nsp191E91EgaAgaG11AY.240.000431
ORF1ab/nsp191E91GgAagGa11AY.250.000006
ORF1ab/nsp191E91KGaaAaa11AY.250.000006
ORF1ab/nsp191E91DgaAgaC11AY.270.000065
ORF1ab/nsp191E91KGaaAaa11AY.290.000016
ORF1ab/nsp191E91VgAagTa11AY.30.00001
ORF1ab/nsp191E91del1Gaa-aa11AY.30.00001
ORF1ab/nsp191E91QGaaCaa11AY.30.00001
ORF1ab/nsp191E91EgaAgaG11AY.30.00001
ORF1ab/nsp191E91KGaaAaa11AY.370.000316
ORF1ab/nsp191E91delGAA---11AY.380.000499
ORF1ab/nsp191E91delGAA---11AY.390.000025
ORF1ab/nsp191E91AgAagCa11AY.390.000025
ORF1ab/nsp191E91GgAagGa11AY.39.10.00004
ORF1ab/nsp191E91KGaaAaa11AY.39.20.001541
ORF1ab/nsp191E91QGaaCaa11AY.40.000002
ORF1ab/nsp191E91AgAagCa11AY.4.20.000022
ORF1ab/nsp191E91GgAagGa11AY.4.20.000022
ORF1ab/nsp191E91AgAAgCG11AY.430.000004
ORF1ab/nsp191E91GgAagGa11AY.430.000004
ORF1ab/nsp191E91DgaAgaC11AY.440.000006
ORF1ab/nsp191E91EgaAgaG11AY.450.000122
ORF1ab/nsp191E91KGaaAaa11AY.450.000122
ORF1ab/nsp191E91KGaaAaa11AY.46.60.000072
ORF1ab/nsp191E91VgAagTa11AY.470.000031
ORF1ab/nsp191E91KGaaAaa11AY.470.000031
ORF1ab/nsp191E91KGaaAaa11AY.50.000021
ORF1ab/nsp191E91KGaaAaa11AY.5.30.000337
ORF1ab/nsp191E91XGaaTaa11AY.540.000095
ORF1ab/nsp191E91GgAagGa11AY.60.000041
ORF1ab/nsp191E91delGAA---11AY.650.000533
ORF1ab/nsp191E91KGaaAaa11AY.70.000196
ORF1ab/nsp191E91EgaAgaG11AY.720.001361
ORF1ab/nsp191E91delGAA---11AY.750.000056
ORF1ab/nsp191E91KGaaAaa11AY.75.10.00018
ORF1ab/nsp191E91KGaaAaa11AY.840.000437
ORF1ab/nsp191E91delGAA---11AY.9.10.000084
ORF1ab/nsp191E91delGAA---11AY.950.000761
ORF1ab/nsp191E91delGAA---11AY.980.000079
ORF1ab/nsp191E91KGaaAaa11AY.980.000079
ORF1ab/nsp191E91GgAagGa11AY.98.10.000048
ORF1ab/nsp191E91delGAA---11B0.000128
ORF1ab/nsp191E91AgAagCa11B.10.000009
ORF1ab/nsp191E91delGAA---11B.10.000009
ORF1ab/nsp191E91XGaaTaa11B.1.10.000018
ORF1ab/nsp191E91EgaAgaG11B.1.10.000018
ORF1ab/nsp191E91del1Gaa-aa11B.1.1.1480.008772
ORF1ab/nsp191E91VgAagTa11B.1.1.1640.005155
ORF1ab/nsp191E91EgaAgaG11B.1.1.2220.000204
ORF1ab/nsp191E91RGAAAGG11B.1.1.3060.000438
ORF1ab/nsp191E91delGAA---11B.1.1.3220.008772
ORF1ab/nsp191E91del2gAAg--11B.1.1.4200.001006
ORF1ab/nsp191E91KGaaAaa11B.1.1.5190.00004
ORF1ab/nsp191E91GgAagGa11B.1.1.70.000001
ORF1ab/nsp191E91DgaAgaT11B.1.1.70.000001
ORF1ab/nsp191E91EgaAgaG11B.1.1600.000031
ORF1ab/nsp191E91XGaaTaa11B.1.1770.000013
ORF1ab/nsp191E91KGaaAaa11B.1.1770.000013
ORF1ab/nsp191E91AgAagCa11B.1.1770.000013
ORF1ab/nsp191E91delGAA---11B.1.177.180.00116
ORF1ab/nsp191E91EgaAgaG11B.1.177.230.003236
ORF1ab/nsp191E91delGAA---11B.1.177.430.001477
ORF1ab/nsp191E91EgaAgaG11B.1.177.440.000519
ORF1ab/nsp191E91delGAA---11B.1.177.570.000281
ORF1ab/nsp191E91delGAA---11B.1.1790.003759
ORF1ab/nsp191E91DgaAgaT11B.1.1890.004292
ORF1ab/nsp191E91XGaaTaa11B.1.20.000009
ORF1ab/nsp191E91KGaaAaa11B.1.20.000009
ORF1ab/nsp191E91delGAA---11B.1.2110.025
ORF1ab/nsp191E91delGAA---11B.1.2430.00007
ORF1ab/nsp191E91XGaaTaa11B.1.2430.00007
ORF1ab/nsp191E91KGaaAaa11B.1.2580.000067
ORF1ab/nsp191E91delGAA---11B.1.2580.000067
ORF1ab/nsp191E91QGaaCaa11B.1.3110.000275
ORF1ab/nsp191E91AgAagCa11B.1.3510.00003
ORF1ab/nsp191E91delGAA---11B.1.3510.00003
ORF1ab/nsp191E91AgAagCa11B.1.351.20.000303
ORF1ab/nsp191E91delGAA---11B.1.360.000146
ORF1ab/nsp191E91QGaaCaa11B.1.36.160.001425
ORF1ab/nsp191E91KGaaAaa11B.1.36.260.002857
ORF1ab/nsp191E91EgaAgaG11B.1.36.280.005747
ORF1ab/nsp191E91KGaaAaa11B.1.36.80.001
ORF1ab/nsp191E91del1Gaa-aa11B.1.3620.001541
ORF1ab/nsp191E91delGAA---11B.1.4270.00005
ORF1ab/nsp191E91DgaAgaC11B.1.4270.00005
ORF1ab/nsp191E91delGAA---11B.1.4290.000024
ORF1ab/nsp191E91AgAagCa11B.1.4590.004082
ORF1ab/nsp191E91EgaAgaG11B.1.466.20.000391
ORF1ab/nsp191E91EgaAgaG11B.1.5250.000113
ORF1ab/nsp191E91XGaaTaa11B.1.5250.000113
ORF1ab/nsp191E91KGaaAaa11B.1.5260.000024
ORF1ab/nsp191E91GgAagGa11B.1.5380.008065
ORF1ab/nsp191E91delGAA---11B.1.5950.000261
ORF1ab/nsp191E91EgaAgaG11B.1.5960.000087
ORF1ab/nsp191E91KGaaAaa11B.1.5960.000087
ORF1ab/nsp191E91DgaAgaC11B.1.617.20.000004
ORF1ab/nsp191E91VgAAgTT11B.1.617.20.000004
ORF1ab/nsp191E91PGAaCCa11B.1.617.20.000004
ORF1ab/nsp191E91QGaaCaa11B.1.6370.000073
ORF1ab/nsp191E91XGaaTaa11B.60.00091
ORF1ab/nsp191E91delGAA---11C.350.000774
ORF1ab/nsp191E91DgaAgaT11C.370.000116
ORF1ab/nsp191E91GgAagGa11D.20.000075
ORF1ab/nsp191E91QGaaCaa11D.20.000075
ORF1ab/nsp191E91DgaAgaT11D.20.000075
ORF1ab/nsp191E91KGaaAaa11P.10.000016