CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 86 & Codon = gtA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp186V86VV86VsyngtTgtA6682480.371257521-523

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp186V86VgtTgtA248668All0.000047
ORF1ab/nsp186V86VgtTgtA164249AY.40.000255
ORF1ab/nsp186V86VgtTgtA11123B.1.1.70.00001
ORF1ab/nsp186V86VgtTgtA140AY.430.000004
ORF1ab/nsp186V86VgtTgtA2128B.1.177.210.001606
ORF1ab/nsp186V86VgtTgtA418B.1.617.20.000015
ORF1ab/nsp186V86VgtTgtA317AY.250.000018
ORF1ab/nsp186V86VgtTgtA112AY.1030.000006
ORF1ab/nsp186V86VgtTgtA311AY.440.000018
ORF1ab/nsp186V86VgtTgtA211B.10.000018
ORF1ab/nsp186V86VgtTgtA1111C.160.011665
ORF1ab/nsp186V86VgtTgtA17B.1.20.000009
ORF1ab/nsp186V86VgtTgtA36AY.1020.00008
ORF1ab/nsp186V86VgtTgtA15B.1.10.000018
ORF1ab/nsp186V86VgtTgtA55P.1.170.000809
ORF1ab/nsp186V86VgtTgtA14B.1.1770.000013
ORF1ab/nsp186V86VgtTgtA13AY.750.000056
ORF1ab/nsp186V86VgtTgtA23AY.9.20.000073
ORF1ab/nsp186V86VgtTgtA33B.1.1.5190.000119
ORF1ab/nsp186V86VgtTgtA12AY.290.000016
ORF1ab/nsp186V86VgtTgtA11AY.460.000104
ORF1ab/nsp186V86VgtTgtA11AY.540.000095
ORF1ab/nsp186V86VgtTgtA11AY.660.00107
ORF1ab/nsp186V86VgtTgtA11AY.670.000464
ORF1ab/nsp186V86VgtTgtA11B.1.1.2160.00089
ORF1ab/nsp186V86VgtTgtA11B.1.1.3120.001912
ORF1ab/nsp186V86VgtTgtA11B.1.2100.002132
ORF1ab/nsp186V86VgtTgtA11B.1.5260.000024
ORF1ab/nsp186V86VgtTgtA11C.390.018868

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.