CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 86 | V86F | V86F | nonsyn | Gtt | Ttt | 2573 | 2573 | 1 | 521-523 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2573 | 2573 | All | 0.000492 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 409 | 409 | B.1.625 | 0.962353 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 366 | 366 | A.28 | 0.968254 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 225 | 225 | B.1.1.7 | 0.000201 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 183 | 183 | A.29 | 0.973404 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 137 | 137 | B.1.2 | 0.001206 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 119 | 119 | AY.103 | 0.000739 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 92 | 92 | AY.98 | 0.007268 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 89 | 89 | B.1.221 | 0.006322 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 63 | 63 | B.1 | 0.000577 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 57 | 57 | AY.4 | 0.000089 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 54 | 54 | AY.120 | 0.002008 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 34 | 34 | B.1.1 | 0.000617 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 34 | 34 | B.1.160 | 0.00106 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 34 | 34 | B.1.177.73 | 0.019253 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 32 | 32 | AY.25 | 0.000192 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 31 | 31 | B.1.617.2 | 0.000117 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 28 | 28 | AY.3 | 0.000278 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 28 | 28 | AY.44 | 0.00017 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 26 | 26 | B.1.177 | 0.000342 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 22 | 22 | B.1.427 | 0.001111 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 21 | 21 | AY.43 | 0.000093 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 18 | 18 | B | 0.002301 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 17 | 17 | C.35 | 0.013158 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 16 | 16 | B.1.1.519 | 0.000635 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 16 | 16 | P.1 | 0.000252 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 15 | 15 | C.36 | 0.013661 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 14 | 14 | B.1.429 | 0.000329 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 14 | 14 | R.1 | 0.00126 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 13 | 13 | B.1.128 | 0.008259 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 12 | 12 | B.1.1.37 | 0.002314 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 11 | 11 | A | 0.004257 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 10 | 10 | AY.54 | 0.000953 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 8 | 8 | A.3 | 0.016771 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 8 | 8 | B.1.1.1 | 0.002614 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 8 | 8 | B.1.1.434 | 0.002788 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 8 | 8 | P.1.1 | 0.002541 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 7 | 7 | B.1.1.286 | 0.02029 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 6 | 6 | B.1.1.189 | 0.009077 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 6 | 6 | B.1.177.33 | 0.009868 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 6 | 6 | B.1.232 | 0.003224 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 6 | 6 | B.1.416 | 0.007614 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | AY.101 | 0.002452 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | B.1.1.333 | 0.005382 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | B.1.111 | 0.005875 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | B.1.177.21 | 0.000382 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 4 | 4 | AY.70 | 0.000834 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 4 | 4 | B.1.1.253 | 0.010025 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 4 | 4 | B.1.177.12 | 0.000607 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 4 | 4 | B.1.576 | 0.003626 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.149 | 0.010274 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.309 | 0.142857 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.36.35 | 0.007812 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.208 | 0.08 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.36.21 | 0.00432 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.468 | 0.011429 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.555 | 0.044444 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | P.7 | 0.008734 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.226 | 0.005814 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | C.22 | 0.071429 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | C.5 | 0.090909 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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