CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 86 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp1	86	V86del	V86del	del	GTT	---	16052	16052	1	521-523

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp1	86	V86del	GTT	---	16052	16052	All	0.00307
ORF1ab/nsp1	86	V86del	GTT	---	4050	4050	AY.4	0.006304
ORF1ab/nsp1	86	V86del	GTT	---	1374	1374	B.1.1.7	0.00123
ORF1ab/nsp1	86	V86del	GTT	---	1097	1097	B.1.617.2	0.004131
ORF1ab/nsp1	86	V86del	GTT	---	930	930	AY.43	0.00412
ORF1ab/nsp1	86	V86del	GTT	---	675	675	AY.44	0.004109
ORF1ab/nsp1	86	V86del	GTT	---	540	540	AY.25	0.003248
ORF1ab/nsp1	86	V86del	GTT	---	396	396	AY.120	0.014723
ORF1ab/nsp1	86	V86del	GTT	---	376	376	AY.3	0.00374
ORF1ab/nsp1	86	V86del	GTT	---	361	361	AY.103	0.002241
ORF1ab/nsp1	86	V86del	GTT	---	332	332	B.1.621	0.029388
ORF1ab/nsp1	86	V86del	GTT	---	272	272	AY.26	0.0077
ORF1ab/nsp1	86	V86del	GTT	---	254	254	AY.4.2	0.005509
ORF1ab/nsp1	86	V86del	GTT	---	181	181	AY.39	0.004473
ORF1ab/nsp1	86	V86del	GTT	---	165	165	AY.5	0.003407
ORF1ab/nsp1	86	V86del	GTT	---	162	162	B.1	0.001484
ORF1ab/nsp1	86	V86del	GTT	---	161	161	AY.47	0.005008
ORF1ab/nsp1	86	V86del	GTT	---	160	160	AY.27	0.010355
ORF1ab/nsp1	86	V86del	GTT	---	135	135	AY.102	0.003579
ORF1ab/nsp1	86	V86del	GTT	---	115	115	AY.75	0.006443
ORF1ab/nsp1	86	V86del	GTT	---	114	114	AY.19	0.129989
ORF1ab/nsp1	86	V86del	GTT	---	109	109	AY.10	0.057764
ORF1ab/nsp1	86	V86del	GTT	---	107	107	B.1.2	0.000942
ORF1ab/nsp1	86	V86del	GTT	---	94	94	AY.29	0.001483
ORF1ab/nsp1	86	V86del	GTT	---	94	94	AY.46.5	0.018651
ORF1ab/nsp1	86	V86del	GTT	---	93	93	AY.9.2	0.003416
ORF1ab/nsp1	86	V86del	GTT	---	86	86	AY.34	0.008339
ORF1ab/nsp1	86	V86del	GTT	---	86	86	AY.42	0.00346
ORF1ab/nsp1	86	V86del	GTT	---	85	85	AY.39.1	0.003367
ORF1ab/nsp1	86	V86del	GTT	---	81	81	AY.46	0.00843
ORF1ab/nsp1	86	V86del	GTT	---	78	78	B.1.177	0.001027
ORF1ab/nsp1	86	V86del	GTT	---	74	74	B	0.009458
ORF1ab/nsp1	86	V86del	GTT	---	72	72	B.1.526	0.001692
ORF1ab/nsp1	86	V86del	GTT	---	70	70	AY.20	0.002721
ORF1ab/nsp1	86	V86del	GTT	---	64	64	AY.54	0.006102
ORF1ab/nsp1	86	V86del	GTT	---	64	64	AY.6	0.002632
ORF1ab/nsp1	86	V86del	GTT	---	60	60	AY.117	0.005071
ORF1ab/nsp1	86	V86del	GTT	---	59	59	AY.33	0.00394
ORF1ab/nsp1	86	V86del	GTT	---	59	59	B.1.1	0.00107
ORF1ab/nsp1	86	V86del	GTT	---	57	57	P.1	0.000898
ORF1ab/nsp1	86	V86del	GTT	---	52	52	AY.7	0.010192
ORF1ab/nsp1	86	V86del	GTT	---	52	52	AY.9	0.003515
ORF1ab/nsp1	86	V86del	GTT	---	49	49	AY.119	0.00173
ORF1ab/nsp1	86	V86del	GTT	---	48	48	AY.7.1	0.00541
ORF1ab/nsp1	86	V86del	GTT	---	46	46	AY.100	0.002116
ORF1ab/nsp1	86	V86del	GTT	---	46	46	P.1.14	0.002199
ORF1ab/nsp1	86	V86del	GTT	---	44	44	B.1.351	0.001308
ORF1ab/nsp1	86	V86del	GTT	---	42	42	AY.46.6	0.003033
ORF1ab/nsp1	86	V86del	GTT	---	41	41	B.1.429	0.000965
ORF1ab/nsp1	86	V86del	GTT	---	40	40	AY.118	0.002506
ORF1ab/nsp1	86	V86del	GTT	---	40	40	AY.12	0.012642
ORF1ab/nsp1	86	V86del	GTT	---	40	40	B.1.1.519	0.001588
ORF1ab/nsp1	86	V86del	GTT	---	39	39	AY.14	0.003432
ORF1ab/nsp1	86	V86del	GTT	---	39	39	AY.65	0.020789
ORF1ab/nsp1	86	V86del	GTT	---	38	38	AY.3.1	0.00324
ORF1ab/nsp1	86	V86del	GTT	---	37	37	AY.9.1	0.003098
ORF1ab/nsp1	86	V86del	GTT	---	37	37	AY.99.2	0.00341
ORF1ab/nsp1	86	V86del	GTT	---	35	35	B.1.258.17	0.003639
ORF1ab/nsp1	86	V86del	GTT	---	34	34	AY.4.2.1	0.005066
ORF1ab/nsp1	86	V86del	GTT	---	34	34	B.1.160	0.00106
ORF1ab/nsp1	86	V86del	GTT	---	33	33	AY.120.1	0.010594
ORF1ab/nsp1	86	V86del	GTT	---	33	33	AY.98	0.002607
ORF1ab/nsp1	86	V86del	GTT	---	32	32	AY.4.5	0.00344
ORF1ab/nsp1	86	V86del	GTT	---	31	31	B.1.258	0.002063
ORF1ab/nsp1	86	V86del	GTT	---	30	30	AY.46.4	0.004935
ORF1ab/nsp1	86	V86del	GTT	---	29	29	AY.45	0.003529
ORF1ab/nsp1	86	V86del	GTT	---	27	27	AY.23	0.001883
ORF1ab/nsp1	86	V86del	GTT	---	26	26	AY.11	0.034806
ORF1ab/nsp1	86	V86del	GTT	---	25	25	AY.46.2	0.015883
ORF1ab/nsp1	86	V86del	GTT	---	25	25	B.1.177.21	0.001912
ORF1ab/nsp1	86	V86del	GTT	---	24	24	AY.62	0.010458
ORF1ab/nsp1	86	V86del	GTT	---	23	23	AY.16	0.008732
ORF1ab/nsp1	86	V86del	GTT	---	21	21	AY.36	0.003112
ORF1ab/nsp1	86	V86del	GTT	---	21	21	AY.46.3	0.019608
ORF1ab/nsp1	86	V86del	GTT	---	21	21	AY.75.1	0.003787
ORF1ab/nsp1	86	V86del	GTT	---	20	20	AY.110	0.002254
ORF1ab/nsp1	86	V86del	GTT	---	20	20	AY.74	0.002313
ORF1ab/nsp1	86	V86del	GTT	---	19	19	AY.13	0.003059
ORF1ab/nsp1	86	V86del	GTT	---	19	19	B.1.1.214	0.001054
ORF1ab/nsp1	86	V86del	GTT	---	18	18	AY.71	0.008551
ORF1ab/nsp1	86	V86del	GTT	---	17	17	AY.111	0.003114
ORF1ab/nsp1	86	V86del	GTT	---	17	17	AY.53	0.004888
ORF1ab/nsp1	86	V86del	GTT	---	17	17	B.1.234	0.002243
ORF1ab/nsp1	86	V86del	GTT	---	17	17	B.1.243	0.001183
ORF1ab/nsp1	86	V86del	GTT	---	17	17	P.1.10	0.004581
ORF1ab/nsp1	86	V86del	GTT	---	16	16	AU.1	0.020253
ORF1ab/nsp1	86	V86del	GTT	---	16	16	AY.5.4	0.004427
ORF1ab/nsp1	86	V86del	GTT	---	16	16	AY.94	0.007083
ORF1ab/nsp1	86	V86del	GTT	---	16	16	B.1.427	0.000808
ORF1ab/nsp1	86	V86del	GTT	---	15	15	AY.5.3	0.005061
ORF1ab/nsp1	86	V86del	GTT	---	15	15	B.1.120	0.115385
ORF1ab/nsp1	86	V86del	GTT	---	14	14	AY.114	0.003235
ORF1ab/nsp1	86	V86del	GTT	---	14	14	AY.38	0.00699
ORF1ab/nsp1	86	V86del	GTT	---	14	14	B.1.1.39	0.007136
ORF1ab/nsp1	86	V86del	GTT	---	13	13	AY.113	0.001851
ORF1ab/nsp1	86	V86del	GTT	---	13	13	AY.120.2.1	0.006477
ORF1ab/nsp1	86	V86del	GTT	---	13	13	AY.121	0.001759
ORF1ab/nsp1	86	V86del	GTT	---	13	13	B.1.438.1	0.001394
ORF1ab/nsp1	86	V86del	GTT	---	13	13	B.1.637	0.00095
ORF1ab/nsp1	86	V86del	GTT	---	12	12	AY.35	0.002797
ORF1ab/nsp1	86	V86del	GTT	---	12	12	AY.90	0.008214
ORF1ab/nsp1	86	V86del	GTT	---	12	12	B.1.525	0.001358
ORF1ab/nsp1	86	V86del	GTT	---	12	12	C.37	0.001393
ORF1ab/nsp1	86	V86del	GTT	---	11	11	AY.106	0.003684
ORF1ab/nsp1	86	V86del	GTT	---	11	11	AY.37	0.003477
ORF1ab/nsp1	86	V86del	GTT	---	11	11	AY.8	0.006667
ORF1ab/nsp1	86	V86del	GTT	---	11	11	B.40	0.004007
ORF1ab/nsp1	86	V86del	GTT	---	11	11	P.1.13	0.009883
ORF1ab/nsp1	86	V86del	GTT	---	10	10	AY.105	0.006431
ORF1ab/nsp1	86	V86del	GTT	---	10	10	AY.109	0.007396
ORF1ab/nsp1	86	V86del	GTT	---	10	10	AY.116	0.002868
ORF1ab/nsp1	86	V86del	GTT	---	10	10	AY.80	0.011287
ORF1ab/nsp1	86	V86del	GTT	---	10	10	B.1.1.305	0.03861
ORF1ab/nsp1	86	V86del	GTT	---	10	10	B.1.210	0.021322
ORF1ab/nsp1	86	V86del	GTT	---	10	10	D.2	0.00075
ORF1ab/nsp1	86	V86del	GTT	---	10	10	P.1.17.1	0.008749
ORF1ab/nsp1	86	V86del	GTT	---	9	9	AD.2	0.001971
ORF1ab/nsp1	86	V86del	GTT	---	9	9	AY.55	0.008257
ORF1ab/nsp1	86	V86del	GTT	---	9	9	AY.7.2	0.005034
ORF1ab/nsp1	86	V86del	GTT	---	9	9	AY.93	0.002458
ORF1ab/nsp1	86	V86del	GTT	---	9	9	AY.99	0.009444
ORF1ab/nsp1	86	V86del	GTT	---	9	9	B.1.1.420	0.009054
ORF1ab/nsp1	86	V86del	GTT	---	9	9	B.1.1.523	0.014063
ORF1ab/nsp1	86	V86del	GTT	---	9	9	B.1.349	0.006433
ORF1ab/nsp1	86	V86del	GTT	---	9	9	B.1.596	0.000784
ORF1ab/nsp1	86	V86del	GTT	---	8	8	AY.107	0.003728
ORF1ab/nsp1	86	V86del	GTT	---	8	8	AY.16.1	0.003759
ORF1ab/nsp1	86	V86del	GTT	---	8	8	AY.61	0.000838
ORF1ab/nsp1	86	V86del	GTT	---	8	8	B.1.1.222	0.001632
ORF1ab/nsp1	86	V86del	GTT	---	8	8	B.1.1.304	0.022472
ORF1ab/nsp1	86	V86del	GTT	---	8	8	B.1.177.26	0.055944
ORF1ab/nsp1	86	V86del	GTT	---	8	8	B.1.400	0.003432
ORF1ab/nsp1	86	V86del	GTT	---	8	8	Q.1	0.001011
ORF1ab/nsp1	86	V86del	GTT	---	7	7	AY.64	0.004167
ORF1ab/nsp1	86	V86del	GTT	---	7	7	AY.87	0.005828
ORF1ab/nsp1	86	V86del	GTT	---	7	7	AY.88	0.006189
ORF1ab/nsp1	86	V86del	GTT	---	7	7	B.1.1.284	0.000752
ORF1ab/nsp1	86	V86del	GTT	---	7	7	B.1.1.416	0.006335
ORF1ab/nsp1	86	V86del	GTT	---	7	7	B.1.1.434	0.00244
ORF1ab/nsp1	86	V86del	GTT	---	7	7	B.1.177.81	0.001325
ORF1ab/nsp1	86	V86del	GTT	---	7	7	B.1.36.9	0.022508
ORF1ab/nsp1	86	V86del	GTT	---	7	7	B.1.380	0.046358
ORF1ab/nsp1	86	V86del	GTT	---	7	7	B.1.623	0.003755
ORF1ab/nsp1	86	V86del	GTT	---	7	7	B.1.628	0.002467
ORF1ab/nsp1	86	V86del	GTT	---	6	6	AY.22	0.012552
ORF1ab/nsp1	86	V86del	GTT	---	6	6	AY.24	0.002586
ORF1ab/nsp1	86	V86del	GTT	---	6	6	AY.4.4	0.002455
ORF1ab/nsp1	86	V86del	GTT	---	6	6	AY.48	0.002791
ORF1ab/nsp1	86	V86del	GTT	---	6	6	AY.51	0.005455
ORF1ab/nsp1	86	V86del	GTT	---	6	6	AY.91	0.004383
ORF1ab/nsp1	86	V86del	GTT	---	6	6	AY.98.1	0.000291
ORF1ab/nsp1	86	V86del	GTT	---	6	6	B.1.110.1	0.6
ORF1ab/nsp1	86	V86del	GTT	---	6	6	B.1.177.43	0.008863
ORF1ab/nsp1	86	V86del	GTT	---	6	6	B.1.351.5	0.003597
ORF1ab/nsp1	86	V86del	GTT	---	6	6	B.1.36	0.000875
ORF1ab/nsp1	86	V86del	GTT	---	6	6	C.36.3	0.003403
ORF1ab/nsp1	86	V86del	GTT	---	6	6	P.1.1	0.001906
ORF1ab/nsp1	86	V86del	GTT	---	6	6	P.2	0.00112
ORF1ab/nsp1	86	V86del	GTT	---	5	5	A.2	0.003309
ORF1ab/nsp1	86	V86del	GTT	---	5	5	AY.101	0.002452
ORF1ab/nsp1	86	V86del	GTT	---	5	5	AY.120.2	0.006427
ORF1ab/nsp1	86	V86del	GTT	---	5	5	AY.23.1	0.002087
ORF1ab/nsp1	86	V86del	GTT	---	5	5	AY.4.3	0.004209
ORF1ab/nsp1	86	V86del	GTT	---	5	5	AY.41	0.00147
ORF1ab/nsp1	86	V86del	GTT	---	5	5	AY.52	0.004072
ORF1ab/nsp1	86	V86del	GTT	---	5	5	AY.70	0.001043
ORF1ab/nsp1	86	V86del	GTT	---	5	5	AY.92	0.001436
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.1.207	0.00591
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.1.232	0.009074
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.1.294	0.006329
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.1.348	0.003981
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.1.50	0.003394
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.111	0.005875
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.177.4	0.001055
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.177.42	0.004472
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.214.2	0.002998
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.279	0.002568
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.36.18	0.002101
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.575	0.001517
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.621.1	0.002529
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.632	0.033557
ORF1ab/nsp1	86	V86del	GTT	---	5	5	C.36	0.004554
ORF1ab/nsp1	86	V86del	GTT	---	4	4	A.1	0.001127
ORF1ab/nsp1	86	V86del	GTT	---	4	4	A.2.5	0.001996
ORF1ab/nsp1	86	V86del	GTT	---	4	4	AY.1	0.001583
ORF1ab/nsp1	86	V86del	GTT	---	4	4	AY.29.1	0.000882
ORF1ab/nsp1	86	V86del	GTT	---	4	4	AY.32	0.00213
ORF1ab/nsp1	86	V86del	GTT	---	4	4	AY.4.1	0.00295
ORF1ab/nsp1	86	V86del	GTT	---	4	4	AY.57	0.002625
ORF1ab/nsp1	86	V86del	GTT	---	4	4	AY.68	0.001095
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.1.170	0.004988
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.1.318	0.001207
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.1.33	0.001684
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.1.37	0.000771
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.1.70	0.001364
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.177.12	0.000607
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.177.6	0.003906
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.177.86	0.000734
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.240	0.000862
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.311	0.001098
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.36.25	0.00883
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.617.1	0.000516
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.29	0.014035
ORF1ab/nsp1	86	V86del	GTT	---	4	4	P.1.15	0.000929
ORF1ab/nsp1	86	V86del	GTT	---	4	4	P.1.17	0.000647
ORF1ab/nsp1	86	V86del	GTT	---	4	4	Q.8	0.00066
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AT.1	0.015385
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.116.1	0.000934
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.39.1.1	0.002174
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.39.2	0.004622
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.40	0.002893
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.50	0.002398
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.58	0.002722
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.66	0.003209
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.69	0.00056
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.78	0.004622
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.1.306	0.001315
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.1.307	0.007595
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.1.311	0.001074
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.1.46	0.0131
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.110.3	0.002155
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.128	0.001906
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.160.8	0.003866
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.177.44	0.001557
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.177.7	0.000495
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.177.73	0.001699
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.22	0.003953
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.221	0.000213
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.258.16	0.00491
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.36.17	0.001482
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.361	0.003866
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.422	0.002437
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.428	0.003061
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.577	0.002062
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.588	0.00273
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.595	0.000783
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.609	0.001438
ORF1ab/nsp1	86	V86del	GTT	---	3	3	C.30.1	0.020134
ORF1ab/nsp1	86	V86del	GTT	---	3	3	P.1.7	0.000958
ORF1ab/nsp1	86	V86del	GTT	---	3	3	R.1	0.00027
ORF1ab/nsp1	86	V86del	GTT	---	2	2	A.2.5.2	0.003145
ORF1ab/nsp1	86	V86del	GTT	---	2	2	A.23.1	0.001408
ORF1ab/nsp1	86	V86del	GTT	---	2	2	A.27	0.003311
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.108	0.002205
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.2	0.000712
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.60	0.001876
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.72	0.002721
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.73	0.001331
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.77	0.002255
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.84	0.000875
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.85	0.000854
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.86	0.00166
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.91.1	0.00813
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.189	0.003026
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.198	0.002937
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.228	0.006098
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.243	0.008163
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.317	0.000823
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.369	0.000892
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.409	0.005666
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.432	0.002532
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.433	0.002849
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.464	0.002946
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.47	0.010695
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.513	0.024691
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.526	0.007092
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.528	0.009615
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.151	0.022222
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.160.10	0.016129
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.160.16	0.001859
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.177.18	0.00232
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.177.5	0.002484
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.177.70	0.011834
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.177.75	0.002081
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.179	0.007519
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.190	0.02
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.265	0.002541
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.329	0.001215
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.336	0.004878
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.344	0.016393
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.36.16	0.002849
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.36.21	0.00432
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.36.29	0.001035
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.36.7	0.008
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.36.8	0.002
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.399	0.003868
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.409	0.001563
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.416	0.002538
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.474	0.003802
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.480	0.004975
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.497	0.00063
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.509	0.001732
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.556	0.015038
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.564	0.000852
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.565	0.001621
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.630	0.010471
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.8	0.003945
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.23	0.005848
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.30	0.029412
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.4	0.004415
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.5	0.076923
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.55	0.0059
ORF1ab/nsp1	86	V86del	GTT	---	2	2	N.4	0.008511
ORF1ab/nsp1	86	V86del	GTT	---	2	2	N.6	0.014184
ORF1ab/nsp1	86	V86del	GTT	---	2	2	P.1.12	0.000968
ORF1ab/nsp1	86	V86del	GTT	---	2	2	P.1.16	0.000748
ORF1ab/nsp1	86	V86del	GTT	---	2	2	P.3	0.00319
ORF1ab/nsp1	86	V86del	GTT	---	2	2	Q.3	0.00029
ORF1ab/nsp1	86	V86del	GTT	---	1	1	A	0.000387
ORF1ab/nsp1	86	V86del	GTT	---	1	1	A.2.3	0.004739
ORF1ab/nsp1	86	V86del	GTT	---	1	1	A.21	0.00277
ORF1ab/nsp1	86	V86del	GTT	---	1	1	A.23	0.010526
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AE.1	0.011364
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AW.1	0.003049
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.104	0.001984
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.15	0.002222
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.30	0.000396
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.34.1	0.00051
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.49	0.003195
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.63	0.000387
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.67	0.000464
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.79	0.001211
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.81	0.001992
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.82	0.001357
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.83	0.001724
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.9.2.1	0.001976
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.95	0.000761
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AZ.1	0.000867
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AZ.2.1	0.00813
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AZ.5	0.003509
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.1	0.000327
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.10	0.001115
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.101	0.01
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.125	0.010204
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.132	0.014925
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.138	0.006061
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.141	0.002012
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.159	0.004673
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.171	0.003676
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.176	0.000439
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.208	0.012195
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.216	0.00089
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.218	0.007692
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.253	0.002506
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.263	0.001558
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.265	0.003155
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.277	0.000759
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.28	0.000311
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.289	0.002083
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.291	0.000742
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.297	0.002237
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.298	0.000862
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.303	0.002762
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.316	0.000925
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.360	0.03125
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.372	0.000689
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.38	0.058824
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.397	0.002252
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.398	0.003226
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.406	0.006494
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.428	0.009434
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.463	0.0625
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.486	0.001577
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.517	0.006803
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.105	0.009615
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.112	0.005181
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.126	0.001276
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.127	0.002198
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.160.24	0.004425
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.160.26	0.002421
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.10	0.000878
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.11	0.001698
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.15	0.000631
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.17	0.000821
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.19	0.001431
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.28	0.007407
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.31	0.011494
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.35	0.000691
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.38	0.010417
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.45	0.000381
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.54	0.000606
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.57	0.000281
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.60	0.000218
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.8	0.000752
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.82	0.000477
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.84	0.006667
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.89	0.02439
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.206	0.000816
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.221.3	0.000833
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.232	0.000537
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.236	0.002053
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.258.7	0.001912
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.258.9	0.005
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.287	0.030303
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.289	0.00266
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.298	0.002114
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.326	0.007576
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.346	0.001311
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.350	0.002933
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.351.2	0.000303
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.356	0.001727
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.36.1	0.00114
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.36.22	0.001208
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.36.28	0.005747
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.367	0.000792
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.369	0.000285
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.371	0.001122
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.375	0.00082
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.396	0.000706
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.403	0.003268
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.404	0.001302
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.426	0.001009
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.433	0.003195
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.436	0.001029
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.442	0.035714
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.466.2	0.000391
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.469	0.00361
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.471	0.002732
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.491	0.052632
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.499	0.00105
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.506	0.02381
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.523	0.002451
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.533	0.009615
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.540	0.009709
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.543	0.01
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.550	0.013699
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.551	0.00129
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.561	0.000397
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.575.1	0.002439
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.576	0.000907
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.578	0.017857
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.581	0.009434
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.586	0.010989
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.593	0.01087
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.597	0.00463
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.601	0.030303
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.618	0.004032
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.622	0.012987
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.625	0.002353
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.626	0.005714
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.631	0.003367
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.634	0.003425
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.84	0.020833
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.39	0.002331
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.4.4	0.018868
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.6	0.00091
ORF1ab/nsp1	86	V86del	GTT	---	1	1	C.1	0.002392
ORF1ab/nsp1	86	V86del	GTT	---	1	1	C.31	0.017857
ORF1ab/nsp1	86	V86del	GTT	---	1	1	C.35	0.000774
ORF1ab/nsp1	86	V86del	GTT	---	1	1	C.36.1	0.004149
ORF1ab/nsp1	86	V86del	GTT	---	1	1	C.8	0.004464
ORF1ab/nsp1	86	V86del	GTT	---	1	1	N.2	0.038462
ORF1ab/nsp1	86	V86del	GTT	---	1	1	P.1.2	0.001156
ORF1ab/nsp1	86	V86del	GTT	---	1	1	Q.2	0.000613
ORF1ab/nsp1	86	V86del	GTT	---	1	1	Q.4	0.000455
ORF1ab/nsp1	86	V86del	GTT	---	1	1	Q.7	0.001111
ORF1ab/nsp1	86	V86del	GTT	---	1	1	W.2	0.004831
ORF1ab/nsp1	86	V86del	GTT	---	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.