CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 86

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp1	86	V86del	V86del	del	GTT	---	16052	16052	1	521-523
ORF1ab/nsp1	86	V86F	V86F	nonsyn	Gtt	Ttt	2573	2573	1	521-523
ORF1ab/nsp1	86	V86I	V86I	nonsyn	Gtt	Att	699	699	1	521-523
ORF1ab/nsp1	86	V86V	V86V	syn	gtT	gtG	668	278	0.416168	521-523
ORF1ab/nsp1	86	V86V	V86V	syn	gtT	gtA	668	248	0.371257	521-523
ORF1ab/nsp1	86	V86V	V86V	syn	gtT	gtC	668	142	0.212575	521-523
ORF1ab/nsp1	86	V86del2	V86del2	del	GTt	--t	73	47	0.643836	521-523
ORF1ab/nsp1	86	V86del2	V86del2	del	GTT	--N	73	23	0.315068	521-523
ORF1ab/nsp1	86	V86del2	V86del2	del	gTT	g--	73	2	0.0273973	521-523
ORF1ab/nsp1	86	V86del2	V86del2	del	GTT	--A	73	1	0.0136986	521-523
ORF1ab/nsp1	86	V86D	V86D	nonsyn	gTt	gAt	37	36	0.972973	521-523
ORF1ab/nsp1	86	V86D	V86D	nonsyn	gTT	gAC	37	1	0.027027	521-523
ORF1ab/nsp1	86	V86del1	V86del1	del	GTt	-Nt	26	15	0.576923	521-523
ORF1ab/nsp1	86	V86del1	V86del1	del	Gtt	-tt	26	7	0.269231	521-523
ORF1ab/nsp1	86	V86del1	V86del1	del	gTt	g-t	26	4	0.153846	521-523
ORF1ab/nsp1	86	V86A	V86A	nonsyn	gTt	gCt	24	24	1	521-523
ORF1ab/nsp1	86	V86G	V86G	nonsyn	gTt	gGt	11	10	0.909091	521-523
ORF1ab/nsp1	86	V86G	V86G	nonsyn	gTT	gGG	11	1	0.0909091	521-523
ORF1ab/nsp1	86	V86H	V86H	nonsyn	GTt	CAt	8	8	1	521-523
ORF1ab/nsp1	86	V86L	V86L	nonsyn	Gtt	Ctt	8	6	0.75	521-523
ORF1ab/nsp1	86	V86L	V86L	nonsyn	GtT	CtC	8	1	0.125	521-523
ORF1ab/nsp1	86	V86L	V86L	nonsyn	GtT	TtA	8	1	0.125	521-523
ORF1ab/nsp1	86	V86M	V86M	nonsyn	GtT	AtG	5	5	1	521-523
ORF1ab/nsp1	86	V86T	V86T	nonsyn	GTT	ACA	5	4	0.8	521-523
ORF1ab/nsp1	86	V86T	V86T	nonsyn	GTT	ACC	5	1	0.2	521-523
ORF1ab/nsp1	86	V86E	V86E	nonsyn	gTT	gAA	1	1	1	521-523
ORF1ab/nsp1	86	V86S	V86S	nonsyn	GTt	AGt	1	1	1	521-523

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp1	86	V86del	GTT	---	16052	16052	All	0.00307
ORF1ab/nsp1	86	V86del	GTT	---	4050	4050	AY.4	0.006304
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2573	2573	All	0.000492
ORF1ab/nsp1	86	V86del	GTT	---	1374	1374	B.1.1.7	0.00123
ORF1ab/nsp1	86	V86del	GTT	---	1097	1097	B.1.617.2	0.004131
ORF1ab/nsp1	86	V86del	GTT	---	930	930	AY.43	0.00412
ORF1ab/nsp1	86	V86I	Gtt	Att	699	699	All	0.000134
ORF1ab/nsp1	86	V86del	GTT	---	675	675	AY.44	0.004109
ORF1ab/nsp1	86	V86V	gtT	gtG	278	668	All	0.000053
ORF1ab/nsp1	86	V86V	gtT	gtA	248	668	All	0.000047
ORF1ab/nsp1	86	V86V	gtT	gtC	142	668	All	0.000027
ORF1ab/nsp1	86	V86del	GTT	---	540	540	AY.25	0.003248
ORF1ab/nsp1	86	V86F	Gtt	Ttt	409	409	B.1.625	0.962353
ORF1ab/nsp1	86	V86del	GTT	---	396	396	AY.120	0.014723
ORF1ab/nsp1	86	V86del	GTT	---	376	376	AY.3	0.00374
ORF1ab/nsp1	86	V86F	Gtt	Ttt	366	366	A.28	0.968254
ORF1ab/nsp1	86	V86del	GTT	---	361	361	AY.103	0.002241
ORF1ab/nsp1	86	V86del	GTT	---	332	332	B.1.621	0.029388
ORF1ab/nsp1	86	V86del	GTT	---	272	272	AY.26	0.0077
ORF1ab/nsp1	86	V86del	GTT	---	254	254	AY.4.2	0.005509
ORF1ab/nsp1	86	V86V	gtT	gtA	164	249	AY.4	0.000255
ORF1ab/nsp1	86	V86V	gtT	gtG	46	249	AY.4	0.000072
ORF1ab/nsp1	86	V86V	gtT	gtC	39	249	AY.4	0.000061
ORF1ab/nsp1	86	V86F	Gtt	Ttt	225	225	B.1.1.7	0.000201
ORF1ab/nsp1	86	V86I	Gtt	Att	187	187	AY.73	0.124418
ORF1ab/nsp1	86	V86F	Gtt	Ttt	183	183	A.29	0.973404
ORF1ab/nsp1	86	V86del	GTT	---	181	181	AY.39	0.004473
ORF1ab/nsp1	86	V86del	GTT	---	165	165	AY.5	0.003407
ORF1ab/nsp1	86	V86del	GTT	---	162	162	B.1	0.001484
ORF1ab/nsp1	86	V86del	GTT	---	161	161	AY.47	0.005008
ORF1ab/nsp1	86	V86del	GTT	---	160	160	AY.27	0.010355
ORF1ab/nsp1	86	V86F	Gtt	Ttt	137	137	B.1.2	0.001206
ORF1ab/nsp1	86	V86del	GTT	---	135	135	AY.102	0.003579
ORF1ab/nsp1	86	V86I	Gtt	Att	131	131	B.1.617.2	0.000493
ORF1ab/nsp1	86	V86V	gtT	gtG	88	123	B.1.1.7	0.000079
ORF1ab/nsp1	86	V86V	gtT	gtC	24	123	B.1.1.7	0.000021
ORF1ab/nsp1	86	V86V	gtT	gtA	11	123	B.1.1.7	0.00001
ORF1ab/nsp1	86	V86F	Gtt	Ttt	119	119	AY.103	0.000739
ORF1ab/nsp1	86	V86del	GTT	---	115	115	AY.75	0.006443
ORF1ab/nsp1	86	V86del	GTT	---	114	114	AY.19	0.129989
ORF1ab/nsp1	86	V86del	GTT	---	109	109	AY.10	0.057764
ORF1ab/nsp1	86	V86del	GTT	---	107	107	B.1.2	0.000942
ORF1ab/nsp1	86	V86del	GTT	---	94	94	AY.29	0.001483
ORF1ab/nsp1	86	V86del	GTT	---	94	94	AY.46.5	0.018651
ORF1ab/nsp1	86	V86del	GTT	---	93	93	AY.9.2	0.003416
ORF1ab/nsp1	86	V86F	Gtt	Ttt	92	92	AY.98	0.007268
ORF1ab/nsp1	86	V86F	Gtt	Ttt	89	89	B.1.221	0.006322
ORF1ab/nsp1	86	V86del	GTT	---	86	86	AY.34	0.008339
ORF1ab/nsp1	86	V86del	GTT	---	86	86	AY.42	0.00346
ORF1ab/nsp1	86	V86del	GTT	---	85	85	AY.39.1	0.003367
ORF1ab/nsp1	86	V86del	GTT	---	81	81	AY.46	0.00843
ORF1ab/nsp1	86	V86del	GTT	---	78	78	B.1.177	0.001027
ORF1ab/nsp1	86	V86del	GTT	---	74	74	B	0.009458
ORF1ab/nsp1	86	V86del2	GTt	--t	47	73	All	0.000009
ORF1ab/nsp1	86	V86del2	GTT	--N	23	73	All	0.000004
ORF1ab/nsp1	86	V86del2	gTT	g--	2	73	All	0
ORF1ab/nsp1	86	V86del2	GTT	--A	1	73	All	0
ORF1ab/nsp1	86	V86del	GTT	---	72	72	B.1.526	0.001692
ORF1ab/nsp1	86	V86del	GTT	---	70	70	AY.20	0.002721
ORF1ab/nsp1	86	V86del	GTT	---	64	64	AY.54	0.006102
ORF1ab/nsp1	86	V86del	GTT	---	64	64	AY.6	0.002632
ORF1ab/nsp1	86	V86F	Gtt	Ttt	63	63	B.1	0.000577
ORF1ab/nsp1	86	V86del	GTT	---	60	60	AY.117	0.005071
ORF1ab/nsp1	86	V86del	GTT	---	59	59	AY.33	0.00394
ORF1ab/nsp1	86	V86del	GTT	---	59	59	B.1.1	0.00107
ORF1ab/nsp1	86	V86F	Gtt	Ttt	57	57	AY.4	0.000089
ORF1ab/nsp1	86	V86del	GTT	---	57	57	P.1	0.000898
ORF1ab/nsp1	86	V86F	Gtt	Ttt	54	54	AY.120	0.002008
ORF1ab/nsp1	86	V86del	GTT	---	52	52	AY.7	0.010192
ORF1ab/nsp1	86	V86del	GTT	---	52	52	AY.9	0.003515
ORF1ab/nsp1	86	V86del	GTT	---	49	49	AY.119	0.00173
ORF1ab/nsp1	86	V86del	GTT	---	48	48	AY.7.1	0.00541
ORF1ab/nsp1	86	V86I	Gtt	Att	47	47	B.1.1.7	0.000042
ORF1ab/nsp1	86	V86del	GTT	---	46	46	AY.100	0.002116
ORF1ab/nsp1	86	V86del	GTT	---	46	46	P.1.14	0.002199
ORF1ab/nsp1	86	V86del	GTT	---	44	44	B.1.351	0.001308
ORF1ab/nsp1	86	V86del	GTT	---	42	42	AY.46.6	0.003033
ORF1ab/nsp1	86	V86del	GTT	---	41	41	B.1.429	0.000965
ORF1ab/nsp1	86	V86del	GTT	---	40	40	AY.118	0.002506
ORF1ab/nsp1	86	V86del	GTT	---	40	40	AY.12	0.012642
ORF1ab/nsp1	86	V86V	gtT	gtG	39	40	AY.43	0.000173
ORF1ab/nsp1	86	V86V	gtT	gtA	1	40	AY.43	0.000004
ORF1ab/nsp1	86	V86del	GTT	---	40	40	B.1.1.519	0.001588
ORF1ab/nsp1	86	V86I	Gtt	Att	40	40	B.1.2	0.000352
ORF1ab/nsp1	86	V86del	GTT	---	39	39	AY.14	0.003432
ORF1ab/nsp1	86	V86del	GTT	---	39	39	AY.65	0.020789
ORF1ab/nsp1	86	V86del	GTT	---	38	38	AY.3.1	0.00324
ORF1ab/nsp1	86	V86D	gTt	gAt	36	37	All	0.000007
ORF1ab/nsp1	86	V86D	gTT	gAC	1	37	All	0
ORF1ab/nsp1	86	V86del	GTT	---	37	37	AY.9.1	0.003098
ORF1ab/nsp1	86	V86del	GTT	---	37	37	AY.99.2	0.00341
ORF1ab/nsp1	86	V86I	Gtt	Att	35	35	AY.4	0.000054
ORF1ab/nsp1	86	V86del	GTT	---	35	35	B.1.258.17	0.003639
ORF1ab/nsp1	86	V86del	GTT	---	34	34	AY.4.2.1	0.005066
ORF1ab/nsp1	86	V86F	Gtt	Ttt	34	34	B.1.1	0.000617
ORF1ab/nsp1	86	V86del	GTT	---	34	34	B.1.160	0.00106
ORF1ab/nsp1	86	V86F	Gtt	Ttt	34	34	B.1.160	0.00106
ORF1ab/nsp1	86	V86F	Gtt	Ttt	34	34	B.1.177.73	0.019253
ORF1ab/nsp1	86	V86del	GTT	---	33	33	AY.120.1	0.010594
ORF1ab/nsp1	86	V86del	GTT	---	33	33	AY.98	0.002607
ORF1ab/nsp1	86	V86F	Gtt	Ttt	32	32	AY.25	0.000192
ORF1ab/nsp1	86	V86del	GTT	---	32	32	AY.4.5	0.00344
ORF1ab/nsp1	86	V86del	GTT	---	31	31	B.1.258	0.002063
ORF1ab/nsp1	86	V86F	Gtt	Ttt	31	31	B.1.617.2	0.000117
ORF1ab/nsp1	86	V86I	Gtt	Att	30	30	AY.103	0.000186
ORF1ab/nsp1	86	V86del	GTT	---	30	30	AY.46.4	0.004935
ORF1ab/nsp1	86	V86del	GTT	---	29	29	AY.45	0.003529
ORF1ab/nsp1	86	V86F	Gtt	Ttt	28	28	AY.3	0.000278
ORF1ab/nsp1	86	V86F	Gtt	Ttt	28	28	AY.44	0.00017
ORF1ab/nsp1	86	V86V	gtT	gtA	21	28	B.1.177.21	0.001606
ORF1ab/nsp1	86	V86V	gtT	gtG	7	28	B.1.177.21	0.000535
ORF1ab/nsp1	86	V86del	GTT	---	27	27	AY.23	0.001883
ORF1ab/nsp1	86	V86I	Gtt	Att	27	27	AY.44	0.000164
ORF1ab/nsp1	86	V86del1	GTt	-Nt	15	26	All	0.000003
ORF1ab/nsp1	86	V86del1	Gtt	-tt	7	26	All	0.000001
ORF1ab/nsp1	86	V86del1	gTt	g-t	4	26	All	0.000001
ORF1ab/nsp1	86	V86del	GTT	---	26	26	AY.11	0.034806
ORF1ab/nsp1	86	V86F	Gtt	Ttt	26	26	B.1.177	0.000342
ORF1ab/nsp1	86	V86del	GTT	---	25	25	AY.46.2	0.015883
ORF1ab/nsp1	86	V86del	GTT	---	25	25	B.1.177.21	0.001912
ORF1ab/nsp1	86	V86A	gTt	gCt	24	24	All	0.000005
ORF1ab/nsp1	86	V86del	GTT	---	24	24	AY.62	0.010458
ORF1ab/nsp1	86	V86del	GTT	---	23	23	AY.16	0.008732
ORF1ab/nsp1	86	V86F	Gtt	Ttt	22	22	B.1.427	0.001111
ORF1ab/nsp1	86	V86del	GTT	---	21	21	AY.36	0.003112
ORF1ab/nsp1	86	V86F	Gtt	Ttt	21	21	AY.43	0.000093
ORF1ab/nsp1	86	V86del	GTT	---	21	21	AY.46.3	0.019608
ORF1ab/nsp1	86	V86del	GTT	---	21	21	AY.75.1	0.003787
ORF1ab/nsp1	86	V86V	gtT	gtG	21	21	B.1.1.63	0.008102
ORF1ab/nsp1	86	V86del	GTT	---	20	20	AY.110	0.002254
ORF1ab/nsp1	86	V86del	GTT	---	20	20	AY.74	0.002313
ORF1ab/nsp1	86	V86del	GTT	---	19	19	AY.13	0.003059
ORF1ab/nsp1	86	V86del	GTT	---	19	19	B.1.1.214	0.001054
ORF1ab/nsp1	86	V86del	GTT	---	18	18	AY.71	0.008551
ORF1ab/nsp1	86	V86F	Gtt	Ttt	18	18	B	0.002301
ORF1ab/nsp1	86	V86V	gtT	gtG	9	18	B.1.617.2	0.000034
ORF1ab/nsp1	86	V86V	gtT	gtC	5	18	B.1.617.2	0.000019
ORF1ab/nsp1	86	V86V	gtT	gtA	4	18	B.1.617.2	0.000015
ORF1ab/nsp1	86	V86del	GTT	---	17	17	AY.111	0.003114
ORF1ab/nsp1	86	V86V	gtT	gtG	8	17	AY.25	0.000048
ORF1ab/nsp1	86	V86V	gtT	gtC	6	17	AY.25	0.000036
ORF1ab/nsp1	86	V86V	gtT	gtA	3	17	AY.25	0.000018
ORF1ab/nsp1	86	V86del	GTT	---	17	17	AY.53	0.004888
ORF1ab/nsp1	86	V86del	GTT	---	17	17	B.1.234	0.002243
ORF1ab/nsp1	86	V86del	GTT	---	17	17	B.1.243	0.001183
ORF1ab/nsp1	86	V86F	Gtt	Ttt	17	17	C.35	0.013158
ORF1ab/nsp1	86	V86del	GTT	---	17	17	P.1.10	0.004581
ORF1ab/nsp1	86	V86del	GTT	---	16	16	AU.1	0.020253
ORF1ab/nsp1	86	V86del	GTT	---	16	16	AY.5.4	0.004427
ORF1ab/nsp1	86	V86del	GTT	---	16	16	AY.94	0.007083
ORF1ab/nsp1	86	V86F	Gtt	Ttt	16	16	B.1.1.519	0.000635
ORF1ab/nsp1	86	V86del	GTT	---	16	16	B.1.427	0.000808
ORF1ab/nsp1	86	V86F	Gtt	Ttt	16	16	P.1	0.000252
ORF1ab/nsp1	86	V86F	Gtt	Ttt	15	15	AY.102	0.000398
ORF1ab/nsp1	86	V86del	GTT	---	15	15	AY.5.3	0.005061
ORF1ab/nsp1	86	V86I	Gtt	Att	15	15	B.1.1	0.000272
ORF1ab/nsp1	86	V86del	GTT	---	15	15	B.1.120	0.115385
ORF1ab/nsp1	86	V86F	Gtt	Ttt	15	15	C.36	0.013661
ORF1ab/nsp1	86	V86del	GTT	---	14	14	AY.114	0.003235
ORF1ab/nsp1	86	V86del	GTT	---	14	14	AY.38	0.00699
ORF1ab/nsp1	86	V86del	GTT	---	14	14	B.1.1.39	0.007136
ORF1ab/nsp1	86	V86I	Gtt	Att	14	14	B.1.234	0.001847
ORF1ab/nsp1	86	V86F	Gtt	Ttt	14	14	B.1.429	0.000329
ORF1ab/nsp1	86	V86F	Gtt	Ttt	14	14	R.1	0.00126
ORF1ab/nsp1	86	V86del	GTT	---	13	13	AY.113	0.001851
ORF1ab/nsp1	86	V86del	GTT	---	13	13	AY.120.2.1	0.006477
ORF1ab/nsp1	86	V86del	GTT	---	13	13	AY.121	0.001759
ORF1ab/nsp1	86	V86F	Gtt	Ttt	13	13	B.1.128	0.008259
ORF1ab/nsp1	86	V86del	GTT	---	13	13	B.1.438.1	0.001394
ORF1ab/nsp1	86	V86del	GTT	---	13	13	B.1.637	0.00095
ORF1ab/nsp1	86	V86V	gtT	gtC	10	12	AY.103	0.000062
ORF1ab/nsp1	86	V86V	gtT	gtA	1	12	AY.103	0.000006
ORF1ab/nsp1	86	V86V	gtT	gtG	1	12	AY.103	0.000006
ORF1ab/nsp1	86	V86I	Gtt	Att	12	12	AY.3	0.000119
ORF1ab/nsp1	86	V86del	GTT	---	12	12	AY.35	0.002797
ORF1ab/nsp1	86	V86I	Gtt	Att	12	12	AY.43	0.000053
ORF1ab/nsp1	86	V86del	GTT	---	12	12	AY.90	0.008214
ORF1ab/nsp1	86	V86F	Gtt	Ttt	12	12	B.1.1.37	0.002314
ORF1ab/nsp1	86	V86del	GTT	---	12	12	B.1.525	0.001358
ORF1ab/nsp1	86	V86del	GTT	---	12	12	C.37	0.001393
ORF1ab/nsp1	86	V86F	Gtt	Ttt	11	11	A	0.004257
ORF1ab/nsp1	86	V86G	gTt	gGt	10	11	All	0.000002
ORF1ab/nsp1	86	V86G	gTT	gGG	1	11	All	0
ORF1ab/nsp1	86	V86del	GTT	---	11	11	AY.106	0.003684
ORF1ab/nsp1	86	V86del	GTT	---	11	11	AY.37	0.003477
ORF1ab/nsp1	86	V86V	gtT	gtC	7	11	AY.44	0.000043
ORF1ab/nsp1	86	V86V	gtT	gtA	3	11	AY.44	0.000018
ORF1ab/nsp1	86	V86V	gtT	gtG	1	11	AY.44	0.000006
ORF1ab/nsp1	86	V86del	GTT	---	11	11	AY.8	0.006667
ORF1ab/nsp1	86	V86V	gtT	gtC	7	11	B.1	0.000064
ORF1ab/nsp1	86	V86V	gtT	gtG	2	11	B.1	0.000018
ORF1ab/nsp1	86	V86V	gtT	gtA	2	11	B.1	0.000018
ORF1ab/nsp1	86	V86I	Gtt	Att	11	11	B.1.258.17	0.001144
ORF1ab/nsp1	86	V86del	GTT	---	11	11	B.40	0.004007
ORF1ab/nsp1	86	V86V	gtT	gtA	11	11	C.16	0.011665
ORF1ab/nsp1	86	V86del	GTT	---	11	11	P.1.13	0.009883
ORF1ab/nsp1	86	V86del	GTT	---	10	10	AY.105	0.006431
ORF1ab/nsp1	86	V86del	GTT	---	10	10	AY.109	0.007396
ORF1ab/nsp1	86	V86del	GTT	---	10	10	AY.116	0.002868
ORF1ab/nsp1	86	V86I	Gtt	Att	10	10	AY.12	0.003161
ORF1ab/nsp1	86	V86F	Gtt	Ttt	10	10	AY.54	0.000953
ORF1ab/nsp1	86	V86del	GTT	---	10	10	AY.80	0.011287
ORF1ab/nsp1	86	V86del	GTT	---	10	10	B.1.1.305	0.03861
ORF1ab/nsp1	86	V86del	GTT	---	10	10	B.1.210	0.021322
ORF1ab/nsp1	86	V86del	GTT	---	10	10	D.2	0.00075
ORF1ab/nsp1	86	V86del	GTT	---	10	10	P.1.17.1	0.008749
ORF1ab/nsp1	86	V86del	GTT	---	9	9	AD.2	0.001971
ORF1ab/nsp1	86	V86del	GTT	---	9	9	AY.55	0.008257
ORF1ab/nsp1	86	V86del	GTT	---	9	9	AY.7.2	0.005034
ORF1ab/nsp1	86	V86del	GTT	---	9	9	AY.93	0.002458
ORF1ab/nsp1	86	V86del	GTT	---	9	9	AY.99	0.009444
ORF1ab/nsp1	86	V86del	GTT	---	9	9	B.1.1.420	0.009054
ORF1ab/nsp1	86	V86del	GTT	---	9	9	B.1.1.523	0.014063
ORF1ab/nsp1	86	V86del	GTT	---	9	9	B.1.349	0.006433
ORF1ab/nsp1	86	V86del	GTT	---	9	9	B.1.596	0.000784
ORF1ab/nsp1	86	V86F	Gtt	Ttt	8	8	A.3	0.016771
ORF1ab/nsp1	86	V86H	GTt	CAt	8	8	All	0.000002
ORF1ab/nsp1	86	V86L	Gtt	Ctt	6	8	All	0.000001
ORF1ab/nsp1	86	V86L	GtT	CtC	1	8	All	0
ORF1ab/nsp1	86	V86L	GtT	TtA	1	8	All	0
ORF1ab/nsp1	86	V86I	Gtt	Att	8	8	AY.100	0.000368
ORF1ab/nsp1	86	V86del	GTT	---	8	8	AY.107	0.003728
ORF1ab/nsp1	86	V86I	Gtt	Att	8	8	AY.119	0.000282
ORF1ab/nsp1	86	V86del	GTT	---	8	8	AY.16.1	0.003759
ORF1ab/nsp1	86	V86I	Gtt	Att	8	8	AY.25	0.000048
ORF1ab/nsp1	86	V86del1	GTt	-Nt	8	8	AY.4	0.000012
ORF1ab/nsp1	86	V86I	Gtt	Att	8	8	AY.4.2	0.000174
ORF1ab/nsp1	86	V86del	GTT	---	8	8	AY.61	0.000838
ORF1ab/nsp1	86	V86F	Gtt	Ttt	8	8	B.1.1.1	0.002614
ORF1ab/nsp1	86	V86del	GTT	---	8	8	B.1.1.222	0.001632
ORF1ab/nsp1	86	V86del	GTT	---	8	8	B.1.1.304	0.022472
ORF1ab/nsp1	86	V86F	Gtt	Ttt	8	8	B.1.1.434	0.002788
ORF1ab/nsp1	86	V86del	GTT	---	8	8	B.1.177.26	0.055944
ORF1ab/nsp1	86	V86del	GTT	---	8	8	B.1.400	0.003432
ORF1ab/nsp1	86	V86I	Gtt	Att	8	8	B.1.526	0.000188
ORF1ab/nsp1	86	V86F	Gtt	Ttt	8	8	P.1.1	0.002541
ORF1ab/nsp1	86	V86del	GTT	---	8	8	Q.1	0.001011
ORF1ab/nsp1	86	V86del2	GTT	--N	6	7	AY.4	0.000009
ORF1ab/nsp1	86	V86del2	GTt	--t	1	7	AY.4	0.000002
ORF1ab/nsp1	86	V86del	GTT	---	7	7	AY.64	0.004167
ORF1ab/nsp1	86	V86del	GTT	---	7	7	AY.87	0.005828
ORF1ab/nsp1	86	V86del	GTT	---	7	7	AY.88	0.006189
ORF1ab/nsp1	86	V86del	GTT	---	7	7	B.1.1.284	0.000752
ORF1ab/nsp1	86	V86F	Gtt	Ttt	7	7	B.1.1.286	0.02029
ORF1ab/nsp1	86	V86del	GTT	---	7	7	B.1.1.416	0.006335
ORF1ab/nsp1	86	V86del	GTT	---	7	7	B.1.1.434	0.00244
ORF1ab/nsp1	86	V86del2	GTt	--t	6	7	B.1.1.7	0.000005
ORF1ab/nsp1	86	V86del2	GTT	--A	1	7	B.1.1.7	0.000001
ORF1ab/nsp1	86	V86del	GTT	---	7	7	B.1.177.81	0.001325
ORF1ab/nsp1	86	V86V	gtT	gtC	4	7	B.1.2	0.000035
ORF1ab/nsp1	86	V86V	gtT	gtG	2	7	B.1.2	0.000018
ORF1ab/nsp1	86	V86V	gtT	gtA	1	7	B.1.2	0.000009
ORF1ab/nsp1	86	V86F	Gtt	Ttt	7	7	B.1.243	0.000487
ORF1ab/nsp1	86	V86del	GTT	---	7	7	B.1.36.9	0.022508
ORF1ab/nsp1	86	V86del	GTT	---	7	7	B.1.380	0.046358
ORF1ab/nsp1	86	V86I	Gtt	Att	7	7	B.1.503	0.017413
ORF1ab/nsp1	86	V86F	Gtt	Ttt	7	7	B.1.596	0.00061
ORF1ab/nsp1	86	V86del	GTT	---	7	7	B.1.623	0.003755
ORF1ab/nsp1	86	V86del	GTT	---	7	7	B.1.628	0.002467
ORF1ab/nsp1	86	V86V	gtT	gtA	3	6	AY.102	0.00008
ORF1ab/nsp1	86	V86V	gtT	gtC	2	6	AY.102	0.000053
ORF1ab/nsp1	86	V86V	gtT	gtG	1	6	AY.102	0.000027
ORF1ab/nsp1	86	V86del	GTT	---	6	6	AY.22	0.012552
ORF1ab/nsp1	86	V86del	GTT	---	6	6	AY.24	0.002586
ORF1ab/nsp1	86	V86del	GTT	---	6	6	AY.4.4	0.002455
ORF1ab/nsp1	86	V86del	GTT	---	6	6	AY.48	0.002791
ORF1ab/nsp1	86	V86del	GTT	---	6	6	AY.51	0.005455
ORF1ab/nsp1	86	V86del	GTT	---	6	6	AY.91	0.004383
ORF1ab/nsp1	86	V86del	GTT	---	6	6	AY.98.1	0.000291
ORF1ab/nsp1	86	V86F	Gtt	Ttt	6	6	B.1.1.189	0.009077
ORF1ab/nsp1	86	V86del	GTT	---	6	6	B.1.110.1	0.6
ORF1ab/nsp1	86	V86F	Gtt	Ttt	6	6	B.1.177.33	0.009868
ORF1ab/nsp1	86	V86del	GTT	---	6	6	B.1.177.43	0.008863
ORF1ab/nsp1	86	V86F	Gtt	Ttt	6	6	B.1.232	0.003224
ORF1ab/nsp1	86	V86del	GTT	---	6	6	B.1.351.5	0.003597
ORF1ab/nsp1	86	V86F	Gtt	Ttt	6	6	B.1.36	0.000875
ORF1ab/nsp1	86	V86del	GTT	---	6	6	B.1.36	0.000875
ORF1ab/nsp1	86	V86F	Gtt	Ttt	6	6	B.1.416	0.007614
ORF1ab/nsp1	86	V86del	GTT	---	6	6	C.36.3	0.003403
ORF1ab/nsp1	86	V86del	GTT	---	6	6	P.1.1	0.001906
ORF1ab/nsp1	86	V86del	GTT	---	6	6	P.2	0.00112
ORF1ab/nsp1	86	V86del	GTT	---	5	5	A.2	0.003309
ORF1ab/nsp1	86	V86M	GtT	AtG	5	5	All	0.000001
ORF1ab/nsp1	86	V86T	GTT	ACA	4	5	All	0.000001
ORF1ab/nsp1	86	V86T	GTT	ACC	1	5	All	0
ORF1ab/nsp1	86	V86F	Gtt	Ttt	5	5	AY.101	0.002452
ORF1ab/nsp1	86	V86del	GTT	---	5	5	AY.101	0.002452
ORF1ab/nsp1	86	V86F	Gtt	Ttt	5	5	AY.119	0.000177
ORF1ab/nsp1	86	V86del	GTT	---	5	5	AY.120.2	0.006427
ORF1ab/nsp1	86	V86I	Gtt	Att	5	5	AY.23	0.000349
ORF1ab/nsp1	86	V86D	gTt	gAt	5	5	AY.23	0.000349
ORF1ab/nsp1	86	V86del	GTT	---	5	5	AY.23.1	0.002087
ORF1ab/nsp1	86	V86V	gtT	gtC	5	5	AY.34	0.000485
ORF1ab/nsp1	86	V86del	GTT	---	5	5	AY.4.3	0.004209
ORF1ab/nsp1	86	V86del	GTT	---	5	5	AY.41	0.00147
ORF1ab/nsp1	86	V86del	GTT	---	5	5	AY.52	0.004072
ORF1ab/nsp1	86	V86F	Gtt	Ttt	5	5	AY.61	0.000524
ORF1ab/nsp1	86	V86del	GTT	---	5	5	AY.70	0.001043
ORF1ab/nsp1	86	V86del	GTT	---	5	5	AY.92	0.001436
ORF1ab/nsp1	86	V86V	gtT	gtC	4	5	B.1.1	0.000073
ORF1ab/nsp1	86	V86V	gtT	gtA	1	5	B.1.1	0.000018
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.1.207	0.00591
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.1.232	0.009074
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.1.294	0.006329
ORF1ab/nsp1	86	V86I	Gtt	Att	5	5	B.1.1.318	0.001509
ORF1ab/nsp1	86	V86F	Gtt	Ttt	5	5	B.1.1.333	0.005382
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.1.348	0.003981
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.1.50	0.003394
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.111	0.005875
ORF1ab/nsp1	86	V86F	Gtt	Ttt	5	5	B.1.111	0.005875
ORF1ab/nsp1	86	V86F	Gtt	Ttt	5	5	B.1.177.21	0.000382
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.177.4	0.001055
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.177.42	0.004472
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.214.2	0.002998
ORF1ab/nsp1	86	V86F	Gtt	Ttt	5	5	B.1.234	0.00066
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.279	0.002568
ORF1ab/nsp1	86	V86F	Gtt	Ttt	5	5	B.1.351	0.000149
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.36.18	0.002101
ORF1ab/nsp1	86	V86F	Gtt	Ttt	5	5	B.1.466.2	0.001956
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.575	0.001517
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.621.1	0.002529
ORF1ab/nsp1	86	V86del	GTT	---	5	5	B.1.632	0.033557
ORF1ab/nsp1	86	V86V	gtT	gtG	5	5	C.18	0.012953
ORF1ab/nsp1	86	V86del	GTT	---	5	5	C.36	0.004554
ORF1ab/nsp1	86	V86V	gtT	gtA	5	5	P.1.17	0.000809
ORF1ab/nsp1	86	V86del	GTT	---	4	4	A.1	0.001127
ORF1ab/nsp1	86	V86del	GTT	---	4	4	A.2.5	0.001996
ORF1ab/nsp1	86	V86del	GTT	---	4	4	AY.1	0.001583
ORF1ab/nsp1	86	V86F	Gtt	Ttt	4	4	AY.118	0.000251
ORF1ab/nsp1	86	V86I	Gtt	Att	4	4	AY.120	0.000149
ORF1ab/nsp1	86	V86del	GTT	---	4	4	AY.29.1	0.000882
ORF1ab/nsp1	86	V86del	GTT	---	4	4	AY.32	0.00213
ORF1ab/nsp1	86	V86V	gtT	gtG	3	4	AY.33	0.0002
ORF1ab/nsp1	86	V86V	gtT	gtC	1	4	AY.33	0.000067
ORF1ab/nsp1	86	V86F	Gtt	Ttt	4	4	AY.39	0.000099
ORF1ab/nsp1	86	V86A	gTt	gCt	4	4	AY.4	0.000006
ORF1ab/nsp1	86	V86del	GTT	---	4	4	AY.4.1	0.00295
ORF1ab/nsp1	86	V86F	Gtt	Ttt	4	4	AY.4.2	0.000087
ORF1ab/nsp1	86	V86D	gTt	gAt	4	4	AY.43	0.000018
ORF1ab/nsp1	86	V86del	GTT	---	4	4	AY.57	0.002625
ORF1ab/nsp1	86	V86del	GTT	---	4	4	AY.68	0.001095
ORF1ab/nsp1	86	V86F	Gtt	Ttt	4	4	AY.70	0.000834
ORF1ab/nsp1	86	V86V	gtT	gtC	4	4	AY.9	0.00027
ORF1ab/nsp1	86	V86I	Gtt	Att	4	4	B.1	0.000037
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.1.170	0.004988
ORF1ab/nsp1	86	V86F	Gtt	Ttt	4	4	B.1.1.253	0.010025
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.1.318	0.001207
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.1.33	0.001684
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.1.37	0.000771
ORF1ab/nsp1	86	V86A	gTt	gCt	4	4	B.1.1.7	0.000004
ORF1ab/nsp1	86	V86T	GTT	ACA	4	4	B.1.1.7	0.000004
ORF1ab/nsp1	86	V86D	gTt	gAt	3	4	B.1.1.7	0.000003
ORF1ab/nsp1	86	V86D	gTT	gAC	1	4	B.1.1.7	0.000001
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.1.70	0.001364
ORF1ab/nsp1	86	V86V	gtT	gtG	3	4	B.1.177	0.00004
ORF1ab/nsp1	86	V86V	gtT	gtA	1	4	B.1.177	0.000013
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.177.12	0.000607
ORF1ab/nsp1	86	V86F	Gtt	Ttt	4	4	B.1.177.12	0.000607
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.177.6	0.003906
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.177.86	0.000734
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.240	0.000862
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.311	0.001098
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.36.25	0.00883
ORF1ab/nsp1	86	V86F	Gtt	Ttt	4	4	B.1.576	0.003626
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.1.617.1	0.000516
ORF1ab/nsp1	86	V86A	gTt	gCt	4	4	B.1.617.2	0.000015
ORF1ab/nsp1	86	V86D	gTt	gAt	4	4	B.1.617.2	0.000015
ORF1ab/nsp1	86	V86del2	GTt	--t	4	4	B.1.621	0.000354
ORF1ab/nsp1	86	V86del	GTT	---	4	4	B.29	0.014035
ORF1ab/nsp1	86	V86del	GTT	---	4	4	P.1.15	0.000929
ORF1ab/nsp1	86	V86del	GTT	---	4	4	P.1.17	0.000647
ORF1ab/nsp1	86	V86del	GTT	---	4	4	Q.8	0.00066
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AT.1	0.015385
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.116.1	0.000934
ORF1ab/nsp1	86	V86I	Gtt	Att	3	3	AY.23.1	0.001252
ORF1ab/nsp1	86	V86del1	Gtt	-tt	3	3	AY.25	0.000018
ORF1ab/nsp1	86	V86V	gtT	gtG	3	3	AY.26	0.000085
ORF1ab/nsp1	86	V86V	gtT	gtG	3	3	AY.3	0.00003
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.39.1.1	0.002174
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.39.2	0.004622
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.40	0.002893
ORF1ab/nsp1	86	V86I	Gtt	Att	3	3	AY.42	0.000121
ORF1ab/nsp1	86	V86G	gTt	gGt	3	3	AY.44	0.000018
ORF1ab/nsp1	86	V86F	Gtt	Ttt	3	3	AY.46.2	0.001906
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.50	0.002398
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.58	0.002722
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.66	0.003209
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.69	0.00056
ORF1ab/nsp1	86	V86V	gtT	gtG	2	3	AY.75	0.000112
ORF1ab/nsp1	86	V86V	gtT	gtA	1	3	AY.75	0.000056
ORF1ab/nsp1	86	V86del	GTT	---	3	3	AY.78	0.004622
ORF1ab/nsp1	86	V86V	gtT	gtA	2	3	AY.9.2	0.000073
ORF1ab/nsp1	86	V86V	gtT	gtG	1	3	AY.9.2	0.000037
ORF1ab/nsp1	86	V86F	Gtt	Ttt	3	3	B.1.1.284	0.000322
ORF1ab/nsp1	86	V86I	Gtt	Att	3	3	B.1.1.284	0.000322
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.1.306	0.001315
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.1.307	0.007595
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.1.311	0.001074
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.1.46	0.0131
ORF1ab/nsp1	86	V86F	Gtt	Ttt	3	3	B.1.1.50	0.002037
ORF1ab/nsp1	86	V86V	gtT	gtA	3	3	B.1.1.519	0.000119
ORF1ab/nsp1	86	V86G	gTt	gGt	3	3	B.1.1.7	0.000003
ORF1ab/nsp1	86	V86del1	Gtt	-tt	2	3	B.1.1.7	0.000002
ORF1ab/nsp1	86	V86del1	GTt	-Nt	1	3	B.1.1.7	0.000001
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.110.3	0.002155
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.128	0.001906
ORF1ab/nsp1	86	V86F	Gtt	Ttt	3	3	B.1.149	0.010274
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.160.8	0.003866
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.177.44	0.001557
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.177.7	0.000495
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.177.73	0.001699
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.22	0.003953
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.221	0.000213
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.258.16	0.00491
ORF1ab/nsp1	86	V86F	Gtt	Ttt	3	3	B.1.309	0.142857
ORF1ab/nsp1	86	V86V	gtT	gtC	3	3	B.1.311	0.000824
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.36.17	0.001482
ORF1ab/nsp1	86	V86F	Gtt	Ttt	3	3	B.1.36.35	0.007812
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.361	0.003866
ORF1ab/nsp1	86	V86F	Gtt	Ttt	3	3	B.1.367	0.002377
ORF1ab/nsp1	86	V86F	Gtt	Ttt	3	3	B.1.375	0.002459
ORF1ab/nsp1	86	V86F	Gtt	Ttt	3	3	B.1.400	0.001287
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.422	0.002437
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.428	0.003061
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.577	0.002062
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.588	0.00273
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.595	0.000783
ORF1ab/nsp1	86	V86del	GTT	---	3	3	B.1.609	0.001438
ORF1ab/nsp1	86	V86F	Gtt	Ttt	3	3	B.1.617.1	0.000387
ORF1ab/nsp1	86	V86del2	GTt	--t	3	3	B.1.617.2	0.000011
ORF1ab/nsp1	86	V86F	Gtt	Ttt	3	3	B.1.621	0.000266
ORF1ab/nsp1	86	V86I	Gtt	Att	3	3	B.1.621	0.000266
ORF1ab/nsp1	86	V86del	GTT	---	3	3	C.30.1	0.020134
ORF1ab/nsp1	86	V86del	GTT	---	3	3	P.1.7	0.000958
ORF1ab/nsp1	86	V86del	GTT	---	3	3	R.1	0.00027
ORF1ab/nsp1	86	V86del	GTT	---	2	2	A.2.5.2	0.003145
ORF1ab/nsp1	86	V86del	GTT	---	2	2	A.23.1	0.001408
ORF1ab/nsp1	86	V86del	GTT	---	2	2	A.27	0.003311
ORF1ab/nsp1	86	V86I	Gtt	Att	2	2	AY.1	0.000791
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.108	0.002205
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	AY.117	0.000169
ORF1ab/nsp1	86	V86V	gtT	gtG	1	2	AY.117	0.000085
ORF1ab/nsp1	86	V86V	gtT	gtC	1	2	AY.117	0.000085
ORF1ab/nsp1	86	V86V	gtT	gtG	1	2	AY.120	0.000037
ORF1ab/nsp1	86	V86V	gtT	gtC	1	2	AY.120	0.000037
ORF1ab/nsp1	86	V86G	gTt	gGt	1	2	AY.17	0.008197
ORF1ab/nsp1	86	V86G	gTT	gGG	1	2	AY.17	0.008197
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.2	0.000712
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	AY.26	0.000057
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	AY.29	0.000032
ORF1ab/nsp1	86	V86V	gtT	gtA	1	2	AY.29	0.000016
ORF1ab/nsp1	86	V86V	gtT	gtC	1	2	AY.29	0.000016
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	AY.33	0.000134
ORF1ab/nsp1	86	V86I	Gtt	Att	2	2	AY.35	0.000466
ORF1ab/nsp1	86	V86V	gtT	gtG	1	2	AY.39	0.000025
ORF1ab/nsp1	86	V86V	gtT	gtC	1	2	AY.39	0.000025
ORF1ab/nsp1	86	V86del2	GTt	--t	2	2	AY.39.1	0.000079
ORF1ab/nsp1	86	V86V	gtT	gtG	2	2	AY.42	0.00008
ORF1ab/nsp1	86	V86del2	GTt	--t	1	2	AY.43	0.000004
ORF1ab/nsp1	86	V86del2	GTT	--N	1	2	AY.43	0.000004
ORF1ab/nsp1	86	V86H	GTt	CAt	2	2	AY.44	0.000012
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	AY.46	0.000208
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	AY.46.5	0.000397
ORF1ab/nsp1	86	V86del2	GTt	--t	2	2	AY.46.6	0.000144
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	AY.5	0.000041
ORF1ab/nsp1	86	V86V	gtT	gtG	2	2	AY.5	0.000041
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.60	0.001876
ORF1ab/nsp1	86	V86V	gtT	gtG	2	2	AY.61	0.00021
ORF1ab/nsp1	86	V86D	gTt	gAt	2	2	AY.61	0.00021
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.72	0.002721
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.73	0.001331
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.77	0.002255
ORF1ab/nsp1	86	V86V	gtT	gtC	2	2	AY.78	0.003082
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.84	0.000875
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	AY.84	0.000875
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.85	0.000854
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.86	0.00166
ORF1ab/nsp1	86	V86D	gTt	gAt	2	2	AY.9.2	0.000073
ORF1ab/nsp1	86	V86del	GTT	---	2	2	AY.91.1	0.00813
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	AY.98.1	0.000097
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	AY.99.2	0.000184
ORF1ab/nsp1	86	V86del2	GTt	--t	2	2	B	0.000256
ORF1ab/nsp1	86	V86M	GtT	AtG	2	2	B.1	0.000018
ORF1ab/nsp1	86	V86A	gTt	gCt	2	2	B.1	0.000018
ORF1ab/nsp1	86	V86del2	GTt	--t	1	2	B.1	0.000009
ORF1ab/nsp1	86	V86del2	GTT	--N	1	2	B.1	0.000009
ORF1ab/nsp1	86	V86I	Gtt	Att	2	2	B.1.1.153	0.002191
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.189	0.003026
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.198	0.002937
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.228	0.006098
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.243	0.008163
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	B.1.1.28	0.000622
ORF1ab/nsp1	86	V86V	gtT	gtG	2	2	B.1.1.298	0.001724
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	B.1.1.306	0.000877
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.317	0.000823
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.369	0.000892
ORF1ab/nsp1	86	V86del2	GTt	--t	2	2	B.1.1.39	0.001019
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.409	0.005666
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.432	0.002532
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.433	0.002849
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.464	0.002946
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.47	0.010695
ORF1ab/nsp1	86	V86I	Gtt	Att	2	2	B.1.1.50	0.001358
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.513	0.024691
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.526	0.007092
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.1.528	0.009615
ORF1ab/nsp1	86	V86del2	GTt	--t	2	2	B.1.111	0.00235
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.151	0.022222
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	B.1.157	0.00597
ORF1ab/nsp1	86	V86V	gtT	gtC	1	2	B.1.160	0.000031
ORF1ab/nsp1	86	V86V	gtT	gtG	1	2	B.1.160	0.000031
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.160.10	0.016129
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.160.16	0.001859
ORF1ab/nsp1	86	V86del1	GTt	-Nt	1	2	B.1.177	0.000013
ORF1ab/nsp1	86	V86del1	Gtt	-tt	1	2	B.1.177	0.000013
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.177.18	0.00232
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.177.5	0.002484
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.177.70	0.011834
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.177.75	0.002081
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	B.1.177.81	0.000379
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	B.1.177.87	0.001456
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.179	0.007519
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.190	0.02
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	B.1.208	0.08
ORF1ab/nsp1	86	V86V	gtT	gtG	2	2	B.1.258.14	0.001961
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.265	0.002541
ORF1ab/nsp1	86	V86I	Gtt	Att	2	2	B.1.298	0.004228
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.329	0.001215
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.336	0.004878
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.344	0.016393
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.36.16	0.002849
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.36.21	0.00432
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	B.1.36.21	0.00432
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.36.29	0.001035
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.36.7	0.008
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.36.8	0.002
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.399	0.003868
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.409	0.001563
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.416	0.002538
ORF1ab/nsp1	86	V86V	gtT	gtC	2	2	B.1.427	0.000101
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	B.1.428	0.002041
ORF1ab/nsp1	86	V86V	gtT	gtG	1	2	B.1.429	0.000024
ORF1ab/nsp1	86	V86V	gtT	gtC	1	2	B.1.429	0.000024
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	B.1.468	0.011429
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.474	0.003802
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.480	0.004975
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.497	0.00063
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.509	0.001732
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	B.1.525	0.000226
ORF1ab/nsp1	86	V86del2	GTt	--t	2	2	B.1.526	0.000047
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	B.1.555	0.044444
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.556	0.015038
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.564	0.000852
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.565	0.001621
ORF1ab/nsp1	86	V86V	gtT	gtG	1	2	B.1.621	0.000089
ORF1ab/nsp1	86	V86V	gtT	gtC	1	2	B.1.621	0.000089
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.630	0.010471
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.1.8	0.003945
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.23	0.005848
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.30	0.029412
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.4	0.004415
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.5	0.076923
ORF1ab/nsp1	86	V86del	GTT	---	2	2	B.55	0.0059
ORF1ab/nsp1	86	V86del	GTT	---	2	2	N.4	0.008511
ORF1ab/nsp1	86	V86del	GTT	---	2	2	N.6	0.014184
ORF1ab/nsp1	86	V86I	Gtt	Att	2	2	P.1	0.000032
ORF1ab/nsp1	86	V86del	GTT	---	2	2	P.1.12	0.000968
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	P.1.12	0.000968
ORF1ab/nsp1	86	V86I	Gtt	Att	2	2	P.1.16	0.000748
ORF1ab/nsp1	86	V86del	GTT	---	2	2	P.1.16	0.000748
ORF1ab/nsp1	86	V86del	GTT	---	2	2	P.3	0.00319
ORF1ab/nsp1	86	V86F	Gtt	Ttt	2	2	P.7	0.008734
ORF1ab/nsp1	86	V86del	GTT	---	2	2	Q.3	0.00029
ORF1ab/nsp1	86	V86G	gTt	gGt	1	1		0.055556
ORF1ab/nsp1	86	V86del	GTT	---	1	1	A	0.000387
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	A.2	0.000662
ORF1ab/nsp1	86	V86del	GTT	---	1	1	A.2.3	0.004739
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	A.2.5	0.000499
ORF1ab/nsp1	86	V86del	GTT	---	1	1	A.21	0.00277
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	A.23	0.010526
ORF1ab/nsp1	86	V86del	GTT	---	1	1	A.23	0.010526
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	A.27	0.001656
ORF1ab/nsp1	86	V86del2	gTT	g--	1	1	A.6	0.005128
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AD.2	0.000219
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AE.1	0.011364
ORF1ab/nsp1	86	V86E	gTT	gAA	1	1	All	0
ORF1ab/nsp1	86	V86S	GTt	AGt	1	1	All	0
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AW.1	0.003049
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.1	0.000396
ORF1ab/nsp1	86	V86D	gTt	gAt	1	1	AY.102	0.000027
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	AY.102	0.000027
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.102	0.000027
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	AY.103	0.000006
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.104	0.001984
ORF1ab/nsp1	86	V86V	gtT	gtC	1	1	AY.106	0.000335
ORF1ab/nsp1	86	V86V	gtT	gtG	1	1	AY.109	0.00074
ORF1ab/nsp1	86	V86D	gTt	gAt	1	1	AY.111	0.000183
ORF1ab/nsp1	86	V86V	gtT	gtG	1	1	AY.111	0.000183
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.111	0.000183
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.116	0.000287
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.117	0.000085
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.118	0.000063
ORF1ab/nsp1	86	V86V	gtT	gtC	1	1	AY.119	0.000035
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	AY.119	0.000035
ORF1ab/nsp1	86	V86del2	GTT	--N	1	1	AY.120	0.000037
ORF1ab/nsp1	86	V86D	gTt	gAt	1	1	AY.120	0.000037
ORF1ab/nsp1	86	V86V	gtT	gtG	1	1	AY.120.2.1	0.000498
ORF1ab/nsp1	86	V86A	gTt	gCt	1	1	AY.13	0.000161
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.13	0.000161
ORF1ab/nsp1	86	V86V	gtT	gtC	1	1	AY.14	0.000088
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.15	0.002222
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.16.1	0.00047
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.16.1	0.00047
ORF1ab/nsp1	86	V86V	gtT	gtG	1	1	AY.17	0.008197
ORF1ab/nsp1	86	V86V	gtT	gtG	1	1	AY.19	0.00114
ORF1ab/nsp1	86	V86del1	GTt	-Nt	1	1	AY.20	0.000039
ORF1ab/nsp1	86	V86V	gtT	gtG	1	1	AY.20	0.000039
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.20	0.000039
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	AY.20	0.000039
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	AY.23	0.00007
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.23	0.00007
ORF1ab/nsp1	86	V86T	GTT	ACC	1	1	AY.23	0.00007
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	AY.25	0.000006
ORF1ab/nsp1	86	V86D	gTt	gAt	1	1	AY.25	0.000006
ORF1ab/nsp1	86	V86del1	GTt	-Nt	1	1	AY.26	0.000028
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.27	0.000065
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.29	0.000016
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	AY.3	0.00001
ORF1ab/nsp1	86	V86A	gTt	gCt	1	1	AY.3	0.00001
ORF1ab/nsp1	86	V86D	gTt	gAt	1	1	AY.3.1	0.000085
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.3.1	0.000085
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.30	0.000396
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.30	0.000396
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.33	0.000067
ORF1ab/nsp1	86	V86H	GTt	CAt	1	1	AY.33	0.000067
ORF1ab/nsp1	86	V86del1	gTt	g-t	1	1	AY.34	0.000097
ORF1ab/nsp1	86	V86D	gTt	gAt	1	1	AY.34	0.000097
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.34.1	0.00051
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.35	0.000233
ORF1ab/nsp1	86	V86del2	GTT	--N	1	1	AY.35	0.000233
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.36	0.000148
ORF1ab/nsp1	86	V86del2	GTT	--N	1	1	AY.36	0.000148
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.39	0.000025
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	AY.39	0.000025
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.39.1	0.00004
ORF1ab/nsp1	86	V86V	gtT	gtG	1	1	AY.39.1	0.00004
ORF1ab/nsp1	86	V86L	Gtt	Ctt	1	1	AY.4	0.000002
ORF1ab/nsp1	86	V86D	gTt	gAt	1	1	AY.4	0.000002
ORF1ab/nsp1	86	V86M	GtT	AtG	1	1	AY.4	0.000002
ORF1ab/nsp1	86	V86del2	GTT	--N	1	1	AY.4.1	0.000737
ORF1ab/nsp1	86	V86del2	GTT	--N	1	1	AY.4.2	0.000022
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.4.2.1	0.000149
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.40	0.000964
ORF1ab/nsp1	86	V86V	gtT	gtG	1	1	AY.41	0.000294
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.42	0.00004
ORF1ab/nsp1	86	V86L	GtT	TtA	1	1	AY.43	0.000004
ORF1ab/nsp1	86	V86del1	gTt	g-t	1	1	AY.43	0.000004
ORF1ab/nsp1	86	V86A	gTt	gCt	1	1	AY.43	0.000004
ORF1ab/nsp1	86	V86del2	GTT	--N	1	1	AY.44	0.000006
ORF1ab/nsp1	86	V86del1	GTt	-Nt	1	1	AY.44	0.000006
ORF1ab/nsp1	86	V86A	gTt	gCt	1	1	AY.44	0.000006
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.45	0.000122
ORF1ab/nsp1	86	V86V	gtT	gtA	1	1	AY.46	0.000104
ORF1ab/nsp1	86	V86H	GTt	CAt	1	1	AY.46	0.000104
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.46	0.000104
ORF1ab/nsp1	86	V86L	Gtt	Ctt	1	1	AY.46.4	0.000165
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.46.4	0.000165
ORF1ab/nsp1	86	V86V	gtT	gtG	1	1	AY.46.5	0.000198
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.46.6	0.000072
ORF1ab/nsp1	86	V86V	gtT	gtG	1	1	AY.46.6	0.000072
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.47	0.000031
ORF1ab/nsp1	86	V86V	gtT	gtG	1	1	AY.47	0.000031
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	AY.48	0.000465
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.49	0.003195
ORF1ab/nsp1	86	V86H	GTt	CAt	1	1	AY.5	0.000021
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.5	0.000021
ORF1ab/nsp1	86	V86A	gTt	gCt	1	1	AY.5	0.000021
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.52	0.000814
ORF1ab/nsp1	86	V86V	gtT	gtA	1	1	AY.54	0.000095
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.56	0.001605
ORF1ab/nsp1	86	V86del1	Gtt	-tt	1	1	AY.6	0.000041
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.6	0.000041
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.60	0.000938
ORF1ab/nsp1	86	V86del2	GTT	--N	1	1	AY.61	0.000105
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.63	0.000387
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.65	0.000533
ORF1ab/nsp1	86	V86V	gtT	gtA	1	1	AY.66	0.00107
ORF1ab/nsp1	86	V86V	gtT	gtA	1	1	AY.67	0.000464
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.67	0.000464
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.68	0.000274
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.73	0.000665
ORF1ab/nsp1	86	V86D	gTt	gAt	1	1	AY.73	0.000665
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.74	0.000116
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.74	0.000116
ORF1ab/nsp1	86	V86del2	GTT	--N	1	1	AY.75	0.000056
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.75	0.000056
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.75.1	0.00018
ORF1ab/nsp1	86	V86D	gTt	gAt	1	1	AY.75.1	0.00018
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.79	0.001211
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.81	0.001992
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.82	0.001357
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.83	0.001724
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.88	0.000884
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.88	0.000884
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	AY.9	0.000068
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.9	0.000068
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.9	0.000068
ORF1ab/nsp1	86	V86del1	GTt	-Nt	1	1	AY.9	0.000068
ORF1ab/nsp1	86	V86D	gTt	gAt	1	1	AY.9	0.000068
ORF1ab/nsp1	86	V86D	gTt	gAt	1	1	AY.9.1	0.000084
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.9.2.1	0.001976
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	AY.9.2.1	0.001976
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AY.95	0.000761
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.98	0.000079
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	AY.99.2	0.000092
ORF1ab/nsp1	86	V86V	gtT	gtG	1	1	AY.99.2	0.000092
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AZ.1	0.000867
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AZ.2.1	0.00813
ORF1ab/nsp1	86	V86del	GTT	---	1	1	AZ.5	0.003509
ORF1ab/nsp1	86	V86A	gTt	gCt	1	1	B	0.000128
ORF1ab/nsp1	86	V86G	gTt	gGt	1	1	B	0.000128
ORF1ab/nsp1	86	V86D	gTt	gAt	1	1	B.1	0.000009
ORF1ab/nsp1	86	V86L	Gtt	Ctt	1	1	B.1.1	0.000018
ORF1ab/nsp1	86	V86del2	GTT	--N	1	1	B.1.1	0.000018
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.1	0.000327
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.10	0.001115
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.101	0.01
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.125	0.010204
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.132	0.014925
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.138	0.006061
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.141	0.002012
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.159	0.004673
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.171	0.003676
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.176	0.000439
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.1.198	0.001468
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	B.1.1.207	0.001182
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.208	0.012195
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.1.214	0.000055
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.216	0.00089
ORF1ab/nsp1	86	V86V	gtT	gtA	1	1	B.1.1.216	0.00089
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	B.1.1.217	0.003636
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.218	0.007692
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.1.222	0.000204
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.1.226	0.005814
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.1.25	0.000569
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.253	0.002506
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.263	0.001558
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.265	0.003155
ORF1ab/nsp1	86	V86V	gtT	gtG	1	1	B.1.1.267	0.010101
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.277	0.000759
ORF1ab/nsp1	86	V86V	gtT	gtC	1	1	B.1.1.28	0.000311
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.28	0.000311
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.289	0.002083
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.291	0.000742
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.297	0.002237
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.298	0.000862
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.303	0.002762
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	B.1.1.303	0.002762
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	B.1.1.306	0.000438
ORF1ab/nsp1	86	V86V	gtT	gtA	1	1	B.1.1.312	0.001912
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.1.312	0.001912
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.316	0.000925
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.1.317	0.000412
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	B.1.1.318	0.000302
ORF1ab/nsp1	86	V86del2	gTT	g--	1	1	B.1.1.322	0.008772
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.1.33	0.000421
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	B.1.1.348	0.000796
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.1.351	0.002793
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.360	0.03125
ORF1ab/nsp1	86	V86del2	GTT	--N	1	1	B.1.1.369	0.000446
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.1.372	0.000689
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.372	0.000689
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.38	0.058824
ORF1ab/nsp1	86	V86V	gtT	gtG	1	1	B.1.1.384	0.02381
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.1.389	0.006061
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.1.39	0.00051
ORF1ab/nsp1	86	V86V	gtT	gtC	1	1	B.1.1.39	0.00051
ORF1ab/nsp1	86	V86A	gTt	gCt	1	1	B.1.1.39	0.00051
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.397	0.002252
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.398	0.003226
ORF1ab/nsp1	86	V86del2	GTT	--N	1	1	B.1.1.4	0.002976
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.406	0.006494
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	B.1.1.409	0.002833
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.428	0.009434
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.463	0.0625
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.1.47	0.005348
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.486	0.001577
ORF1ab/nsp1	86	V86V	gtT	gtG	1	1	B.1.1.50	0.000679
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.1.517	0.006803
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	B.1.1.519	0.00004
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	B.1.1.519	0.00004
ORF1ab/nsp1	86	V86del1	GTt	-Nt	1	1	B.1.1.519	0.00004
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.1.58	0.005376
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.1.63	0.000386
ORF1ab/nsp1	86	V86L	Gtt	Ctt	1	1	B.1.1.7	0.000001
ORF1ab/nsp1	86	V86H	GTt	CAt	1	1	B.1.1.7	0.000001
ORF1ab/nsp1	86	V86M	GtT	AtG	1	1	B.1.1.7	0.000001
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	B.1.1.70	0.000341
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.105	0.009615
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.112	0.005181
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.126	0.001276
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.127	0.002198
ORF1ab/nsp1	86	V86L	Gtt	Ctt	1	1	B.1.160	0.000031
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	B.1.160.19	0.035714
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.160.24	0.004425
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.160.26	0.002421
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.170	0.00431
ORF1ab/nsp1	86	V86G	gTt	gGt	1	1	B.1.177	0.000013
ORF1ab/nsp1	86	V86del2	GTT	--N	1	1	B.1.177	0.000013
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	B.1.177	0.000013
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.10	0.000878
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.11	0.001698
ORF1ab/nsp1	86	V86del2	GTT	--N	1	1	B.1.177.12	0.000152
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.15	0.000631
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.17	0.000821
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.19	0.001431
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.177.24	0.001295
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.28	0.007407
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.31	0.011494
ORF1ab/nsp1	86	V86V	gtT	gtC	1	1	B.1.177.35	0.000691
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.35	0.000691
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.38	0.010417
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.177.4	0.000211
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.45	0.000381
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.177.46	0.000918
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.54	0.000606
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.57	0.000281
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.177.60	0.000218
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.60	0.000218
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.177.76	0.002494
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.8	0.000752
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.177.8	0.000752
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.82	0.000477
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.84	0.006667
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.177.86	0.000183
ORF1ab/nsp1	86	V86del2	GTT	--N	1	1	B.1.177.86	0.000183
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.177.89	0.02439
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.189	0.004292
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.206	0.000816
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	B.1.210	0.002132
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.210	0.002132
ORF1ab/nsp1	86	V86V	gtT	gtA	1	1	B.1.210	0.002132
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.214.2	0.0006
ORF1ab/nsp1	86	V86A	gTt	gCt	1	1	B.1.221	0.000071
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.221.3	0.000833
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.232	0.000537
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.236	0.002053
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.240	0.000216
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	B.1.258	0.000067
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.258	0.000067
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.258.7	0.001912
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.258.9	0.005
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.287	0.030303
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.289	0.00266
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.298	0.002114
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.311	0.000275
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.326	0.007576
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.346	0.001311
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.350	0.002933
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.350	0.002933
ORF1ab/nsp1	86	V86V	gtT	gtC	1	1	B.1.351	0.00003
ORF1ab/nsp1	86	V86A	gTt	gCt	1	1	B.1.351.1	0.038462
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.351.2	0.000303
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.356	0.001727
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.36.1	0.00114
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.36.18	0.00042
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.36.22	0.001208
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.36.28	0.005747
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.36.29	0.000517
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.36.39	0.002217
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.362	0.001541
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.367	0.000792
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.369	0.000285
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.369	0.000285
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.371	0.001122
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.375	0.00082
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.389	0.001002
ORF1ab/nsp1	86	V86del2	GTT	--N	1	1	B.1.389	0.001002
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.396	0.000706
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.403	0.003268
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.404	0.001302
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.409	0.000781
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.422	0.000812
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.425	0.002994
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.426	0.001009
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.426	0.001009
ORF1ab/nsp1	86	V86D	gTt	gAt	1	1	B.1.427	0.00005
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.433	0.003195
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.436	0.001029
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.442	0.035714
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.456	0.003268
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.462	0.007246
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.466.2	0.000391
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.469	0.00361
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.469	0.00361
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.471	0.002732
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.491	0.052632
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.499	0.00105
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.506	0.02381
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.523	0.002451
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	B.1.525	0.000113
ORF1ab/nsp1	86	V86V	gtT	gtA	1	1	B.1.526	0.000024
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.526	0.000024
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.533	0.009615
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.540	0.009709
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.543	0.01
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.550	0.013699
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.551	0.00129
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.561	0.000397
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.574	0.002151
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	B.1.575	0.000303
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.575.1	0.002439
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.576	0.000907
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.577	0.000687
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.578	0.017857
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.581	0.009434
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.586	0.010989
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.593	0.01087
ORF1ab/nsp1	86	V86L	Gtt	Ctt	1	1	B.1.595	0.000261
ORF1ab/nsp1	86	V86D	gTt	gAt	1	1	B.1.596	0.000087
ORF1ab/nsp1	86	V86V	gtT	gtC	1	1	B.1.596	0.000087
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	B.1.596	0.000087
ORF1ab/nsp1	86	V86V	gtT	gtG	1	1	B.1.597	0.00463
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.597	0.00463
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.601	0.030303
ORF1ab/nsp1	86	V86V	gtT	gtC	1	1	B.1.617.1	0.000129
ORF1ab/nsp1	86	V86L	GtT	CtC	1	1	B.1.617.1	0.000129
ORF1ab/nsp1	86	V86E	gTT	gAA	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	86	V86M	GtT	AtG	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	86	V86S	GTt	AGt	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	86	V86del1	gTt	g-t	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.618	0.004032
ORF1ab/nsp1	86	V86H	GTt	CAt	1	1	B.1.621	0.000089
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.621.1	0.000506
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.622	0.012987
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.625	0.002353
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.626	0.005714
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.631	0.003367
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.634	0.003425
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	B.1.637	0.000073
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	B.1.637	0.000073
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.1.84	0.020833
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.39	0.002331
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.4.4	0.018868
ORF1ab/nsp1	86	V86del	GTT	---	1	1	B.6	0.00091
ORF1ab/nsp1	86	V86del	GTT	---	1	1	C.1	0.002392
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	C.22	0.071429
ORF1ab/nsp1	86	V86del	GTT	---	1	1	C.31	0.017857
ORF1ab/nsp1	86	V86del	GTT	---	1	1	C.35	0.000774
ORF1ab/nsp1	86	V86del	GTT	---	1	1	C.36.1	0.004149
ORF1ab/nsp1	86	V86V	gtT	gtG	1	1	C.37	0.000116
ORF1ab/nsp1	86	V86V	gtT	gtA	1	1	C.39	0.018868
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	C.5	0.090909
ORF1ab/nsp1	86	V86del	GTT	---	1	1	C.8	0.004464
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	D.2	0.000075
ORF1ab/nsp1	86	V86del1	gTt	g-t	1	1	D.2	0.000075
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	D.2	0.000075
ORF1ab/nsp1	86	V86del	GTT	---	1	1	N.2	0.038462
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	P.1	0.000016
ORF1ab/nsp1	86	V86V	gtT	gtC	1	1	P.1	0.000016
ORF1ab/nsp1	86	V86D	gTt	gAt	1	1	P.1.1	0.000318
ORF1ab/nsp1	86	V86del2	GTt	--t	1	1	P.1.14	0.000048
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	P.1.14	0.000048
ORF1ab/nsp1	86	V86A	gTt	gCt	1	1	P.1.14	0.000048
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	P.1.17	0.000162
ORF1ab/nsp1	86	V86del	GTT	---	1	1	P.1.2	0.001156
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	P.1.2	0.001156
ORF1ab/nsp1	86	V86I	Gtt	Att	1	1	Q.1	0.000126
ORF1ab/nsp1	86	V86del	GTT	---	1	1	Q.2	0.000613
ORF1ab/nsp1	86	V86del	GTT	---	1	1	Q.4	0.000455
ORF1ab/nsp1	86	V86H	GTt	CAt	1	1	Q.4	0.000455
ORF1ab/nsp1	86	V86F	Gtt	Ttt	1	1	Q.7	0.001111
ORF1ab/nsp1	86	V86del	GTT	---	1	1	Q.7	0.001111
ORF1ab/nsp1	86	V86D	gTt	gAt	1	1	Q.8	0.000165
ORF1ab/nsp1	86	V86del	GTT	---	1	1	W.2	0.004831
ORF1ab/nsp1	86	V86del	GTT	---	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.