CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 86 | V86del | V86del | del | GTT | --- | 16052 | 16052 | 1 | 521-523 |
ORF1ab/nsp1 | 86 | V86F | V86F | nonsyn | Gtt | Ttt | 2573 | 2573 | 1 | 521-523 |
ORF1ab/nsp1 | 86 | V86I | V86I | nonsyn | Gtt | Att | 699 | 699 | 1 | 521-523 |
ORF1ab/nsp1 | 86 | V86V | V86V | syn | gtT | gtG | 668 | 278 | 0.416168 | 521-523 |
ORF1ab/nsp1 | 86 | V86V | V86V | syn | gtT | gtA | 668 | 248 | 0.371257 | 521-523 |
ORF1ab/nsp1 | 86 | V86V | V86V | syn | gtT | gtC | 668 | 142 | 0.212575 | 521-523 |
ORF1ab/nsp1 | 86 | V86del2 | V86del2 | del | GTt | --t | 73 | 47 | 0.643836 | 521-523 |
ORF1ab/nsp1 | 86 | V86del2 | V86del2 | del | GTT | --N | 73 | 23 | 0.315068 | 521-523 |
ORF1ab/nsp1 | 86 | V86del2 | V86del2 | del | gTT | g-- | 73 | 2 | 0.0273973 | 521-523 |
ORF1ab/nsp1 | 86 | V86del2 | V86del2 | del | GTT | --A | 73 | 1 | 0.0136986 | 521-523 |
ORF1ab/nsp1 | 86 | V86D | V86D | nonsyn | gTt | gAt | 37 | 36 | 0.972973 | 521-523 |
ORF1ab/nsp1 | 86 | V86D | V86D | nonsyn | gTT | gAC | 37 | 1 | 0.027027 | 521-523 |
ORF1ab/nsp1 | 86 | V86del1 | V86del1 | del | GTt | -Nt | 26 | 15 | 0.576923 | 521-523 |
ORF1ab/nsp1 | 86 | V86del1 | V86del1 | del | Gtt | -tt | 26 | 7 | 0.269231 | 521-523 |
ORF1ab/nsp1 | 86 | V86del1 | V86del1 | del | gTt | g-t | 26 | 4 | 0.153846 | 521-523 |
ORF1ab/nsp1 | 86 | V86A | V86A | nonsyn | gTt | gCt | 24 | 24 | 1 | 521-523 |
ORF1ab/nsp1 | 86 | V86G | V86G | nonsyn | gTt | gGt | 11 | 10 | 0.909091 | 521-523 |
ORF1ab/nsp1 | 86 | V86G | V86G | nonsyn | gTT | gGG | 11 | 1 | 0.0909091 | 521-523 |
ORF1ab/nsp1 | 86 | V86H | V86H | nonsyn | GTt | CAt | 8 | 8 | 1 | 521-523 |
ORF1ab/nsp1 | 86 | V86L | V86L | nonsyn | Gtt | Ctt | 8 | 6 | 0.75 | 521-523 |
ORF1ab/nsp1 | 86 | V86L | V86L | nonsyn | GtT | CtC | 8 | 1 | 0.125 | 521-523 |
ORF1ab/nsp1 | 86 | V86L | V86L | nonsyn | GtT | TtA | 8 | 1 | 0.125 | 521-523 |
ORF1ab/nsp1 | 86 | V86M | V86M | nonsyn | GtT | AtG | 5 | 5 | 1 | 521-523 |
ORF1ab/nsp1 | 86 | V86T | V86T | nonsyn | GTT | ACA | 5 | 4 | 0.8 | 521-523 |
ORF1ab/nsp1 | 86 | V86T | V86T | nonsyn | GTT | ACC | 5 | 1 | 0.2 | 521-523 |
ORF1ab/nsp1 | 86 | V86E | V86E | nonsyn | gTT | gAA | 1 | 1 | 1 | 521-523 |
ORF1ab/nsp1 | 86 | V86S | V86S | nonsyn | GTt | AGt | 1 | 1 | 1 | 521-523 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 16052 | 16052 | All | 0.00307 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4050 | 4050 | AY.4 | 0.006304 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2573 | 2573 | All | 0.000492 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1374 | 1374 | B.1.1.7 | 0.00123 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1097 | 1097 | B.1.617.2 | 0.004131 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 930 | 930 | AY.43 | 0.00412 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 699 | 699 | All | 0.000134 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 675 | 675 | AY.44 | 0.004109 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 278 | 668 | All | 0.000053 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 248 | 668 | All | 0.000047 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 142 | 668 | All | 0.000027 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 540 | 540 | AY.25 | 0.003248 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 409 | 409 | B.1.625 | 0.962353 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 396 | 396 | AY.120 | 0.014723 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 376 | 376 | AY.3 | 0.00374 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 366 | 366 | A.28 | 0.968254 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 361 | 361 | AY.103 | 0.002241 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 332 | 332 | B.1.621 | 0.029388 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 272 | 272 | AY.26 | 0.0077 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 254 | 254 | AY.4.2 | 0.005509 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 164 | 249 | AY.4 | 0.000255 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 46 | 249 | AY.4 | 0.000072 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 39 | 249 | AY.4 | 0.000061 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 225 | 225 | B.1.1.7 | 0.000201 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 187 | 187 | AY.73 | 0.124418 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 183 | 183 | A.29 | 0.973404 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 181 | 181 | AY.39 | 0.004473 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 165 | 165 | AY.5 | 0.003407 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 162 | 162 | B.1 | 0.001484 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 161 | 161 | AY.47 | 0.005008 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 160 | 160 | AY.27 | 0.010355 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 137 | 137 | B.1.2 | 0.001206 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 135 | 135 | AY.102 | 0.003579 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 131 | 131 | B.1.617.2 | 0.000493 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 88 | 123 | B.1.1.7 | 0.000079 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 24 | 123 | B.1.1.7 | 0.000021 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 11 | 123 | B.1.1.7 | 0.00001 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 119 | 119 | AY.103 | 0.000739 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 115 | 115 | AY.75 | 0.006443 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 114 | 114 | AY.19 | 0.129989 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 109 | 109 | AY.10 | 0.057764 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 107 | 107 | B.1.2 | 0.000942 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 94 | 94 | AY.29 | 0.001483 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 94 | 94 | AY.46.5 | 0.018651 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 93 | 93 | AY.9.2 | 0.003416 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 92 | 92 | AY.98 | 0.007268 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 89 | 89 | B.1.221 | 0.006322 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 86 | 86 | AY.34 | 0.008339 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 86 | 86 | AY.42 | 0.00346 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 85 | 85 | AY.39.1 | 0.003367 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 81 | 81 | AY.46 | 0.00843 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 78 | 78 | B.1.177 | 0.001027 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 74 | 74 | B | 0.009458 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 47 | 73 | All | 0.000009 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 23 | 73 | All | 0.000004 |
ORF1ab/nsp1 | 86 | V86del2 | gTT | g-- | 2 | 73 | All | 0 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --A | 1 | 73 | All | 0 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 72 | 72 | B.1.526 | 0.001692 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 70 | 70 | AY.20 | 0.002721 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 64 | 64 | AY.54 | 0.006102 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 64 | 64 | AY.6 | 0.002632 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 63 | 63 | B.1 | 0.000577 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 60 | 60 | AY.117 | 0.005071 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 59 | 59 | AY.33 | 0.00394 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 59 | 59 | B.1.1 | 0.00107 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 57 | 57 | AY.4 | 0.000089 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 57 | 57 | P.1 | 0.000898 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 54 | 54 | AY.120 | 0.002008 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 52 | 52 | AY.7 | 0.010192 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 52 | 52 | AY.9 | 0.003515 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 49 | 49 | AY.119 | 0.00173 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 48 | 48 | AY.7.1 | 0.00541 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 47 | 47 | B.1.1.7 | 0.000042 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 46 | 46 | AY.100 | 0.002116 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 46 | 46 | P.1.14 | 0.002199 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 44 | 44 | B.1.351 | 0.001308 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 42 | 42 | AY.46.6 | 0.003033 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 41 | 41 | B.1.429 | 0.000965 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 40 | 40 | AY.118 | 0.002506 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 40 | 40 | AY.12 | 0.012642 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 39 | 40 | AY.43 | 0.000173 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 1 | 40 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 40 | 40 | B.1.1.519 | 0.001588 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 40 | 40 | B.1.2 | 0.000352 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 39 | 39 | AY.14 | 0.003432 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 39 | 39 | AY.65 | 0.020789 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 38 | 38 | AY.3.1 | 0.00324 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 36 | 37 | All | 0.000007 |
ORF1ab/nsp1 | 86 | V86D | gTT | gAC | 1 | 37 | All | 0 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 37 | 37 | AY.9.1 | 0.003098 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 37 | 37 | AY.99.2 | 0.00341 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 35 | 35 | AY.4 | 0.000054 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 35 | 35 | B.1.258.17 | 0.003639 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 34 | 34 | AY.4.2.1 | 0.005066 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 34 | 34 | B.1.1 | 0.000617 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 34 | 34 | B.1.160 | 0.00106 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 34 | 34 | B.1.160 | 0.00106 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 34 | 34 | B.1.177.73 | 0.019253 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 33 | 33 | AY.120.1 | 0.010594 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 33 | 33 | AY.98 | 0.002607 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 32 | 32 | AY.25 | 0.000192 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 32 | 32 | AY.4.5 | 0.00344 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 31 | 31 | B.1.258 | 0.002063 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 31 | 31 | B.1.617.2 | 0.000117 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 30 | 30 | AY.103 | 0.000186 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 30 | 30 | AY.46.4 | 0.004935 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 29 | 29 | AY.45 | 0.003529 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 28 | 28 | AY.3 | 0.000278 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 28 | 28 | AY.44 | 0.00017 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 21 | 28 | B.1.177.21 | 0.001606 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 7 | 28 | B.1.177.21 | 0.000535 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 27 | 27 | AY.23 | 0.001883 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 27 | 27 | AY.44 | 0.000164 |
ORF1ab/nsp1 | 86 | V86del1 | GTt | -Nt | 15 | 26 | All | 0.000003 |
ORF1ab/nsp1 | 86 | V86del1 | Gtt | -tt | 7 | 26 | All | 0.000001 |
ORF1ab/nsp1 | 86 | V86del1 | gTt | g-t | 4 | 26 | All | 0.000001 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 26 | 26 | AY.11 | 0.034806 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 26 | 26 | B.1.177 | 0.000342 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 25 | 25 | AY.46.2 | 0.015883 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 25 | 25 | B.1.177.21 | 0.001912 |
ORF1ab/nsp1 | 86 | V86A | gTt | gCt | 24 | 24 | All | 0.000005 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 24 | 24 | AY.62 | 0.010458 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 23 | 23 | AY.16 | 0.008732 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 22 | 22 | B.1.427 | 0.001111 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 21 | 21 | AY.36 | 0.003112 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 21 | 21 | AY.43 | 0.000093 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 21 | 21 | AY.46.3 | 0.019608 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 21 | 21 | AY.75.1 | 0.003787 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 21 | 21 | B.1.1.63 | 0.008102 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 20 | 20 | AY.110 | 0.002254 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 20 | 20 | AY.74 | 0.002313 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 19 | 19 | AY.13 | 0.003059 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 19 | 19 | B.1.1.214 | 0.001054 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 18 | 18 | AY.71 | 0.008551 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 18 | 18 | B | 0.002301 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 9 | 18 | B.1.617.2 | 0.000034 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 5 | 18 | B.1.617.2 | 0.000019 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 4 | 18 | B.1.617.2 | 0.000015 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 17 | 17 | AY.111 | 0.003114 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 8 | 17 | AY.25 | 0.000048 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 6 | 17 | AY.25 | 0.000036 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 3 | 17 | AY.25 | 0.000018 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 17 | 17 | AY.53 | 0.004888 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 17 | 17 | B.1.234 | 0.002243 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 17 | 17 | B.1.243 | 0.001183 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 17 | 17 | C.35 | 0.013158 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 17 | 17 | P.1.10 | 0.004581 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 16 | 16 | AU.1 | 0.020253 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 16 | 16 | AY.5.4 | 0.004427 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 16 | 16 | AY.94 | 0.007083 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 16 | 16 | B.1.1.519 | 0.000635 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 16 | 16 | B.1.427 | 0.000808 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 16 | 16 | P.1 | 0.000252 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 15 | 15 | AY.5.3 | 0.005061 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 15 | 15 | B.1.1 | 0.000272 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 15 | 15 | B.1.120 | 0.115385 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 15 | 15 | C.36 | 0.013661 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 14 | 14 | AY.114 | 0.003235 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 14 | 14 | AY.38 | 0.00699 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 14 | 14 | B.1.1.39 | 0.007136 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 14 | 14 | B.1.234 | 0.001847 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 14 | 14 | B.1.429 | 0.000329 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 14 | 14 | R.1 | 0.00126 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 13 | 13 | AY.113 | 0.001851 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 13 | 13 | AY.120.2.1 | 0.006477 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 13 | 13 | AY.121 | 0.001759 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 13 | 13 | B.1.128 | 0.008259 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 13 | 13 | B.1.438.1 | 0.001394 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 13 | 13 | B.1.637 | 0.00095 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 10 | 12 | AY.103 | 0.000062 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 1 | 12 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 12 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 12 | 12 | AY.3 | 0.000119 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 12 | 12 | AY.35 | 0.002797 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 12 | 12 | AY.90 | 0.008214 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 12 | 12 | B.1.1.37 | 0.002314 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 12 | 12 | B.1.525 | 0.001358 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 12 | 12 | C.37 | 0.001393 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 11 | 11 | A | 0.004257 |
ORF1ab/nsp1 | 86 | V86G | gTt | gGt | 10 | 11 | All | 0.000002 |
ORF1ab/nsp1 | 86 | V86G | gTT | gGG | 1 | 11 | All | 0 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 11 | 11 | AY.106 | 0.003684 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 11 | 11 | AY.37 | 0.003477 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 7 | 11 | AY.44 | 0.000043 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 3 | 11 | AY.44 | 0.000018 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 11 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 11 | 11 | AY.8 | 0.006667 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 7 | 11 | B.1 | 0.000064 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 2 | 11 | B.1 | 0.000018 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 2 | 11 | B.1 | 0.000018 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 11 | 11 | B.1.258.17 | 0.001144 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 11 | 11 | B.40 | 0.004007 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 11 | 11 | C.16 | 0.011665 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 11 | 11 | P.1.13 | 0.009883 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 10 | 10 | AY.105 | 0.006431 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 10 | 10 | AY.109 | 0.007396 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 10 | 10 | AY.116 | 0.002868 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 10 | 10 | AY.12 | 0.003161 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 10 | 10 | AY.54 | 0.000953 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 10 | 10 | AY.80 | 0.011287 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 10 | 10 | B.1.1.305 | 0.03861 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 10 | 10 | B.1.210 | 0.021322 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 10 | 10 | D.2 | 0.00075 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 10 | 10 | P.1.17.1 | 0.008749 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 9 | 9 | AD.2 | 0.001971 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 9 | 9 | AY.55 | 0.008257 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 9 | 9 | AY.7.2 | 0.005034 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 9 | 9 | AY.93 | 0.002458 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 9 | 9 | AY.99 | 0.009444 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 9 | 9 | B.1.1.420 | 0.009054 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 9 | 9 | B.1.1.523 | 0.014063 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 9 | 9 | B.1.349 | 0.006433 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 8 | 8 | A.3 | 0.016771 |
ORF1ab/nsp1 | 86 | V86H | GTt | CAt | 8 | 8 | All | 0.000002 |
ORF1ab/nsp1 | 86 | V86L | Gtt | Ctt | 6 | 8 | All | 0.000001 |
ORF1ab/nsp1 | 86 | V86L | GtT | CtC | 1 | 8 | All | 0 |
ORF1ab/nsp1 | 86 | V86L | GtT | TtA | 1 | 8 | All | 0 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 8 | 8 | AY.107 | 0.003728 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 8 | 8 | AY.16.1 | 0.003759 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp1 | 86 | V86del1 | GTt | -Nt | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 8 | 8 | B.1.1.1 | 0.002614 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 8 | 8 | B.1.1.304 | 0.022472 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 8 | 8 | B.1.1.434 | 0.002788 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 8 | 8 | B.1.177.26 | 0.055944 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 8 | 8 | B.1.400 | 0.003432 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 8 | 8 | B.1.526 | 0.000188 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 8 | 8 | P.1.1 | 0.002541 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 8 | 8 | Q.1 | 0.001011 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 6 | 7 | AY.4 | 0.000009 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 7 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 7 | 7 | AY.64 | 0.004167 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 7 | 7 | AY.87 | 0.005828 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 7 | 7 | AY.88 | 0.006189 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 7 | 7 | B.1.1.284 | 0.000752 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 7 | 7 | B.1.1.286 | 0.02029 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 7 | 7 | B.1.1.416 | 0.006335 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 7 | 7 | B.1.1.434 | 0.00244 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 6 | 7 | B.1.1.7 | 0.000005 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --A | 1 | 7 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 7 | 7 | B.1.177.81 | 0.001325 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 4 | 7 | B.1.2 | 0.000035 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 2 | 7 | B.1.2 | 0.000018 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 1 | 7 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 7 | 7 | B.1.36.9 | 0.022508 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 7 | 7 | B.1.380 | 0.046358 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 7 | 7 | B.1.503 | 0.017413 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 7 | 7 | B.1.623 | 0.003755 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 7 | 7 | B.1.628 | 0.002467 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 3 | 6 | AY.102 | 0.00008 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 2 | 6 | AY.102 | 0.000053 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 6 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 6 | 6 | AY.22 | 0.012552 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 6 | 6 | AY.24 | 0.002586 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 6 | 6 | AY.4.4 | 0.002455 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 6 | 6 | AY.48 | 0.002791 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 6 | 6 | AY.51 | 0.005455 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 6 | 6 | AY.91 | 0.004383 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 6 | 6 | B.1.1.189 | 0.009077 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 6 | 6 | B.1.110.1 | 0.6 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 6 | 6 | B.1.177.33 | 0.009868 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 6 | 6 | B.1.177.43 | 0.008863 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 6 | 6 | B.1.232 | 0.003224 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 6 | 6 | B.1.351.5 | 0.003597 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 6 | 6 | B.1.416 | 0.007614 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 6 | 6 | C.36.3 | 0.003403 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 6 | 6 | P.1.1 | 0.001906 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | A.2 | 0.003309 |
ORF1ab/nsp1 | 86 | V86M | GtT | AtG | 5 | 5 | All | 0.000001 |
ORF1ab/nsp1 | 86 | V86T | GTT | ACA | 4 | 5 | All | 0.000001 |
ORF1ab/nsp1 | 86 | V86T | GTT | ACC | 1 | 5 | All | 0 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | AY.101 | 0.002452 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | AY.101 | 0.002452 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | AY.120.2 | 0.006427 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | AY.23.1 | 0.002087 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | AY.4.3 | 0.004209 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | AY.41 | 0.00147 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | AY.52 | 0.004072 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | AY.70 | 0.001043 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | AY.92 | 0.001436 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 4 | 5 | B.1.1 | 0.000073 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | B.1.1.207 | 0.00591 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | B.1.1.232 | 0.009074 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | B.1.1.294 | 0.006329 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | B.1.1.333 | 0.005382 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | B.1.1.348 | 0.003981 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | B.1.1.50 | 0.003394 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | B.1.111 | 0.005875 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | B.1.111 | 0.005875 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | B.1.177.21 | 0.000382 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | B.1.177.4 | 0.001055 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | B.1.177.42 | 0.004472 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | B.1.214.2 | 0.002998 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | B.1.279 | 0.002568 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | B.1.36.18 | 0.002101 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | B.1.621.1 | 0.002529 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | B.1.632 | 0.033557 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 5 | 5 | C.18 | 0.012953 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 5 | 5 | C.36 | 0.004554 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | A.1 | 0.001127 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | AY.29.1 | 0.000882 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 3 | 4 | AY.33 | 0.0002 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 4 | AY.33 | 0.000067 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp1 | 86 | V86A | gTt | gCt | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | AY.4.1 | 0.00295 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | AY.57 | 0.002625 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 4 | 4 | AY.70 | 0.000834 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | B.1.1.170 | 0.004988 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 4 | 4 | B.1.1.253 | 0.010025 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp1 | 86 | V86A | gTt | gCt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp1 | 86 | V86T | GTT | ACA | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 3 | 4 | B.1.1.7 | 0.000003 |
ORF1ab/nsp1 | 86 | V86D | gTT | gAC | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 3 | 4 | B.1.177 | 0.00004 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 1 | 4 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | B.1.177.12 | 0.000607 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 4 | 4 | B.1.177.12 | 0.000607 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | B.1.177.6 | 0.003906 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | B.1.177.86 | 0.000734 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | B.1.36.25 | 0.00883 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 4 | 4 | B.1.576 | 0.003626 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp1 | 86 | V86A | gTt | gCt | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | B.29 | 0.014035 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | P.1.17 | 0.000647 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | AT.1 | 0.015385 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | AY.116.1 | 0.000934 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 3 | 3 | AY.23.1 | 0.001252 |
ORF1ab/nsp1 | 86 | V86del1 | Gtt | -tt | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | AY.39.1.1 | 0.002174 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | AY.39.2 | 0.004622 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | AY.40 | 0.002893 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp1 | 86 | V86G | gTt | gGt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | AY.50 | 0.002398 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | AY.58 | 0.002722 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | AY.66 | 0.003209 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 2 | 3 | AY.75 | 0.000112 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 1 | 3 | AY.75 | 0.000056 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | AY.78 | 0.004622 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 2 | 3 | AY.9.2 | 0.000073 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 3 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.1.307 | 0.007595 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.1.46 | 0.0131 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp1 | 86 | V86G | gTt | gGt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp1 | 86 | V86del1 | Gtt | -tt | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp1 | 86 | V86del1 | GTt | -Nt | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.128 | 0.001906 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.149 | 0.010274 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.160.8 | 0.003866 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.22 | 0.003953 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.258.16 | 0.00491 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.309 | 0.142857 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.36.35 | 0.007812 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.361 | 0.003866 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.422 | 0.002437 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.428 | 0.003061 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.577 | 0.002062 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.588 | 0.00273 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | C.30.1 | 0.020134 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | A.2.5.2 | 0.003145 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | A.27 | 0.003311 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 2 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 2 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 2 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 2 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 86 | V86G | gTt | gGt | 1 | 2 | AY.17 | 0.008197 |
ORF1ab/nsp1 | 86 | V86G | gTT | gGG | 1 | 2 | AY.17 | 0.008197 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 1 | 2 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 2 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 86 | V86H | GTt | CAt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | AY.72 | 0.002721 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | AY.91.1 | 0.00813 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 2 | 2 | B | 0.000256 |
ORF1ab/nsp1 | 86 | V86M | GtT | AtG | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp1 | 86 | V86A | gTt | gCt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.1.198 | 0.002937 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.1.228 | 0.006098 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.1.243 | 0.008163 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 2 | 2 | B.1.1.298 | 0.001724 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.1.369 | 0.000892 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.1.433 | 0.002849 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.1.47 | 0.010695 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.1.513 | 0.024691 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.1.526 | 0.007092 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.151 | 0.022222 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 2 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 2 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.160.10 | 0.016129 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp1 | 86 | V86del1 | GTt | -Nt | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 86 | V86del1 | Gtt | -tt | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.177.5 | 0.002484 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.177.70 | 0.011834 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.179 | 0.007519 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.190 | 0.02 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.208 | 0.08 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 2 | 2 | B.1.298 | 0.004228 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.329 | 0.001215 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.336 | 0.004878 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.344 | 0.016393 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.36.21 | 0.00432 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.36.21 | 0.00432 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.36.7 | 0.008 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.468 | 0.011429 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.474 | 0.003802 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.480 | 0.004975 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | B.1.555 | 0.044444 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.556 | 0.015038 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 2 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 2 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.630 | 0.010471 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.1.8 | 0.003945 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.23 | 0.005848 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.30 | 0.029412 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.5 | 0.076923 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | B.55 | 0.0059 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 2 | 2 | P.7 | 0.008734 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp1 | 86 | V86G | gTt | gGt | 1 | 1 | 0.055556 | |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | A.2.3 | 0.004739 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp1 | 86 | V86del2 | gTT | g-- | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AE.1 | 0.011364 |
ORF1ab/nsp1 | 86 | V86E | gTT | gAA | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 86 | V86S | GTt | AGt | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp1 | 86 | V86A | gTt | gCt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp1 | 86 | V86del1 | GTt | -Nt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 86 | V86T | GTT | ACC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 86 | V86del1 | GTt | -Nt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 86 | V86A | gTt | gCt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp1 | 86 | V86H | GTt | CAt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp1 | 86 | V86del1 | gTt | g-t | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp1 | 86 | V86L | Gtt | Ctt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 86 | V86M | GtT | AtG | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 86 | V86L | GtT | TtA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 86 | V86del1 | gTt | g-t | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 86 | V86A | gTt | gCt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 86 | V86del1 | GTt | -Nt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 86 | V86A | gTt | gCt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 86 | V86H | GTt | CAt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 86 | V86L | Gtt | Ctt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp1 | 86 | V86H | GTt | CAt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 86 | V86A | gTt | gCt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp1 | 86 | V86del1 | Gtt | -tt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 86 | V86del1 | GTt | -Nt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AZ.2.1 | 0.00813 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp1 | 86 | V86A | gTt | gCt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 86 | V86G | gTt | gGt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 86 | V86L | Gtt | Ctt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.125 | 0.010204 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.132 | 0.014925 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.138 | 0.006061 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.208 | 0.012195 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | B.1.1.217 | 0.003636 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.226 | 0.005814 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 1 | B.1.1.267 | 0.010101 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp1 | 86 | V86del2 | gTT | g-- | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.360 | 0.03125 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.38 | 0.058824 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 1 | B.1.1.384 | 0.02381 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp1 | 86 | V86A | gTt | gCt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.406 | 0.006494 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.428 | 0.009434 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.463 | 0.0625 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 86 | V86del1 | GTt | -Nt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp1 | 86 | V86L | Gtt | Ctt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 86 | V86H | GTt | CAt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 86 | V86M | GtT | AtG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.105 | 0.009615 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.112 | 0.005181 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.127 | 0.002198 |
ORF1ab/nsp1 | 86 | V86L | Gtt | Ctt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | B.1.160.19 | 0.035714 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.160.24 | 0.004425 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp1 | 86 | V86G | gTt | gGt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.28 | 0.007407 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.38 | 0.010417 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.177.89 | 0.02439 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp1 | 86 | V86A | gTt | gCt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.258.9 | 0.005 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.287 | 0.030303 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 86 | V86A | gTt | gCt | 1 | 1 | B.1.351.1 | 0.038462 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp1 | 86 | V86del2 | GTT | --N | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.442 | 0.035714 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.491 | 0.052632 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.506 | 0.02381 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.578 | 0.017857 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.586 | 0.010989 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.593 | 0.01087 |
ORF1ab/nsp1 | 86 | V86L | Gtt | Ctt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.601 | 0.030303 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp1 | 86 | V86L | GtT | CtC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp1 | 86 | V86E | gTT | gAA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 86 | V86M | GtT | AtG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 86 | V86S | GTt | AGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 86 | V86del1 | gTt | g-t | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp1 | 86 | V86H | GTt | CAt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.622 | 0.012987 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.626 | 0.005714 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.1.84 | 0.020833 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.4.4 | 0.018868 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | C.22 | 0.071429 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | C.31 | 0.017857 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | C.36.1 | 0.004149 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtA | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | C.5 | 0.090909 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | C.8 | 0.004464 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 86 | V86del1 | gTt | g-t | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | N.2 | 0.038462 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 86 | V86V | gtT | gtC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp1 | 86 | V86del2 | GTt | --t | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp1 | 86 | V86A | gTt | gCt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp1 | 86 | V86I | Gtt | Att | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp1 | 86 | V86H | GTt | CAt | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp1 | 86 | V86F | Gtt | Ttt | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp1 | 86 | V86D | gTt | gAt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | W.2 | 0.004831 |
ORF1ab/nsp1 | 86 | V86del | GTT | --- | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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