CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 85 | M85V | M85V | nonsyn | Atg | Gtg | 9587 | 9532 | 0.994263 | 518-520 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 9532 | 9587 | All | 0.001823 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1714 | 1717 | AY.4 | 0.002668 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1532 | 1534 | AY.26 | 0.043371 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 775 | 775 | B.1.1.7 | 0.000694 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 619 | 620 | B.1.617.2 | 0.002331 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 433 | 458 | AY.43 | 0.001918 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 223 | 225 | AY.25 | 0.001341 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 206 | 206 | AY.44 | 0.001254 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 198 | 198 | AY.103 | 0.001229 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 186 | 186 | AY.8 | 0.112727 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 166 | 167 | AY.3 | 0.001651 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 157 | 161 | AY.4.2 | 0.003405 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 156 | 156 | AY.120 | 0.0058 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 144 | 145 | AY.19 | 0.164196 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 122 | 123 | AY.42 | 0.004908 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 121 | 122 | AY.75 | 0.006779 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 105 | 106 | AY.5 | 0.002168 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 106 | 106 | B.1.2 | 0.000933 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 98 | 98 | B.1.1.214 | 0.005435 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 92 | 93 | AY.39 | 0.002273 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 85 | 86 | AY.102 | 0.002254 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 80 | 81 | B.1 | 0.000733 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 66 | 66 | B.1.160 | 0.002058 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 61 | 61 | AY.46.6 | 0.004405 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 59 | 59 | AY.39.1 | 0.002337 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 58 | 58 | AY.47 | 0.001804 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 57 | 57 | AY.46.5 | 0.01131 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 53 | 54 | B.1.177 | 0.000698 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 51 | 51 | AY.46.4 | 0.00839 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 48 | 48 | B.1.177.21 | 0.003671 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 42 | 42 | AY.119 | 0.001483 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 41 | 41 | AY.6 | 0.001686 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 39 | 39 | AY.46 | 0.004059 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 39 | 39 | P.1 | 0.000614 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 36 | 36 | AY.118 | 0.002255 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 36 | 36 | AY.3.1 | 0.003069 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 36 | 36 | AY.33 | 0.002404 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 33 | 33 | AY.99.2 | 0.003041 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 33 | 33 | B.1.1 | 0.000599 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 31 | 31 | AY.29 | 0.000489 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 29 | 29 | AY.9.2 | 0.001065 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 29 | 29 | B.1.526 | 0.000682 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 28 | 28 | AY.9.1 | 0.002344 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 27 | 27 | AY.20 | 0.001049 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 26 | 26 | B.1.1.519 | 0.001032 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 25 | 25 | AY.34 | 0.002424 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 25 | 25 | AY.54 | 0.002384 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 25 | 25 | AY.7 | 0.0049 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 25 | 25 | B.1.258 | 0.001664 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 24 | 24 | AY.75.1 | 0.004327 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 23 | 23 | AY.4.5 | 0.002472 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 23 | 23 | B.1.351 | 0.000684 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 22 | 22 | AY.98 | 0.001738 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 22 | 22 | B.1.429 | 0.000518 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 21 | 21 | AY.13 | 0.003381 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 20 | 20 | AY.16 | 0.007593 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 20 | 20 | AY.7.1 | 0.002254 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 19 | 20 | B.1.621 | 0.001682 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 17 | 17 | AY.1 | 0.006727 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 17 | 17 | AY.12 | 0.005373 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 16 | 17 | AY.35 | 0.003729 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 17 | 17 | AY.53 | 0.004888 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 16 | 16 | AY.37 | 0.005057 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 16 | 16 | AY.70 | 0.003336 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 16 | 16 | B.1.427 | 0.000808 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 15 | 15 | AY.23 | 0.001046 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 15 | 15 | AY.65 | 0.007996 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 15 | 15 | AY.9 | 0.001014 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 14 | 14 | AY.111 | 0.002564 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 14 | 14 | AY.121 | 0.001894 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 14 | 14 | AY.14 | 0.001232 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 14 | 14 | AY.27 | 0.000906 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 14 | 14 | AY.36 | 0.002075 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 14 | 14 | AY.4.2.1 | 0.002086 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 14 | 14 | AY.93 | 0.003823 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 13 | 13 | AY.100 | 0.000598 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 12 | 12 | B.1.1.318 | 0.003621 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 12 | 12 | P.1.14 | 0.000574 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 11 | 11 | AY.92 | 0.00316 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 11 | 11 | B.1.258.17 | 0.001144 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 10 | 11 | P.1.16 | 0.003741 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 10 | 10 | AY.4.4 | 0.004092 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 10 | 10 | B.1.177.54 | 0.006064 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 9 | 10 | B.1.596 | 0.000784 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 9 | 9 | AY.71 | 0.004276 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 9 | 9 | B.1.1.50 | 0.00611 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 9 | 9 | B.1.234 | 0.001187 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 9 | 9 | B.1.637 | 0.000658 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 8 | 8 | AY.10 | 0.00424 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 8 | 8 | AY.110 | 0.000902 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 8 | 8 | AY.117 | 0.000676 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 8 | 8 | AY.74 | 0.000925 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 8 | 8 | P.1.1 | 0.002541 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 7 | 7 | AY.106 | 0.002344 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 7 | 7 | AY.11 | 0.009371 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 7 | 7 | AY.120.1 | 0.002247 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 7 | 7 | AY.45 | 0.000852 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 7 | 7 | AY.46.3 | 0.006536 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 7 | 7 | B.1.595 | 0.001827 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 6 | 6 | AY.105 | 0.003859 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 5 | 6 | AY.16.1 | 0.00235 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 6 | 6 | B.1.128 | 0.003812 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 5 | 5 | AY.24 | 0.002155 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 5 | 5 | AY.38 | 0.002496 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 5 | 5 | AY.46.2 | 0.003177 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 5 | 5 | AY.62 | 0.002179 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 5 | 5 | AY.64 | 0.002976 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 5 | 5 | B.1.1.434 | 0.001743 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 5 | 5 | B.1.438.1 | 0.000536 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 5 | 5 | B.1.517 | 0.002135 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 4 | AY.5.3 | 0.001012 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 4 | 4 | AY.7.2 | 0.002237 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 4 | 4 | AY.72 | 0.005442 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 4 | 4 | AY.94 | 0.001771 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 4 | 4 | B | 0.000511 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 4 | 4 | B.1.1.207 | 0.004728 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 4 | 4 | B.1.1.218 | 0.030769 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 4 | 4 | B.1.160.11 | 0.022857 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 4 | 4 | B.1.177.30 | 0.01005 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 4 | 4 | B.1.351.2 | 0.00121 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 4 | 4 | B.1.497 | 0.001259 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 4 | 4 | P.1.10 | 0.001078 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 3 | A.27 | 0.003311 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | AY.120.2 | 0.003856 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | AY.40 | 0.002893 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | AY.41 | 0.000882 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | AY.51 | 0.002727 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | AY.52 | 0.002443 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | AY.58 | 0.002722 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | AY.91 | 0.002191 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | B.1.1.176 | 0.001318 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | B.1.1.298 | 0.002586 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | B.1.1.369 | 0.001339 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | B.1.110 | 0.013575 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | B.1.160.7 | 0.006237 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | B.1.279 | 0.001541 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | A | 0.000774 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AU.3 | 0.004219 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AY.15 | 0.004444 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AY.4.1 | 0.001475 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 2 | AY.55 | 0.000917 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AY.66 | 0.002139 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AY.80 | 0.002257 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.1.101 | 0.02 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.1.224 | 0.028571 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.1.240 | 0.00939 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.1.377 | 0.002762 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.160.18 | 0.014599 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.160.26 | 0.004843 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.177.43 | 0.002954 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.22 | 0.002635 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.222 | 0.003384 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.292 | 0.117647 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.324 | 0.00321 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.356 | 0.003454 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.425 | 0.005988 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.1.639 | 0.043478 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | Q.7 | 0.002222 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 2 | 2 | W.4 | 0.002703 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AZ.2.1 | 0.00813 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | AZ.4 | 0.003356 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.13 | 0.035714 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.132 | 0.014925 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.234 | 0.012048 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.251 | 0.007937 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.338 | 0.017241 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.428 | 0.009434 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.67 | 0.004566 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.108 | 0.005814 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.177.89 | 0.02439 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.190 | 0.01 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.213 | 0.014925 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.254 | 0.025 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.256 | 0.017241 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.258.21 | 0.007752 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.423 | 0.010204 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.450 | 0.011364 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.542 | 0.03125 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.554 | 0.004405 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.4.4 | 0.018868 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.53 | 0.011765 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp1 | 85 | M85V | Atg | Gtg | 1 | 1 | Q.6 | 0.006623 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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