CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 84

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp1	84	V84del	V84del	del	GTT	---	53437	53437	1	515-517
ORF1ab/nsp1	84	V84V	V84V	syn	gtT	gtG	4787	4256	0.889075	515-517
ORF1ab/nsp1	84	V84V	V84V	syn	gtT	gtC	4787	482	0.100689	515-517
ORF1ab/nsp1	84	V84V	V84V	syn	gtT	gtA	4787	49	0.0102361	515-517
ORF1ab/nsp1	84	V84del1	V84del1	del	GTT	-NN	1833	836	0.456083	515-517
ORF1ab/nsp1	84	V84del1	V84del1	del	GtT	-tN	1833	806	0.439716	515-517
ORF1ab/nsp1	84	V84del1	V84del1	del	Gtt	-tt	1833	106	0.0578287	515-517
ORF1ab/nsp1	84	V84del1	V84del1	del	gtT	gt-	1833	34	0.0185488	515-517
ORF1ab/nsp1	84	V84del1	V84del1	del	gTT	g-N	1833	22	0.0120022	515-517
ORF1ab/nsp1	84	V84del1	V84del1	del	GTt	-Nt	1833	21	0.0114566	515-517
ORF1ab/nsp1	84	V84del1	V84del1	del	gTt	g-t	1833	8	0.00436443	515-517
ORF1ab/nsp1	84	V84I	V84I	nonsyn	Gtt	Att	295	295	1	515-517
ORF1ab/nsp1	84	V84del2	V84del2	del	gTT	g--	62	58	0.935484	515-517
ORF1ab/nsp1	84	V84del2	V84del2	del	GTT	--N	62	3	0.0483871	515-517
ORF1ab/nsp1	84	V84del2	V84del2	del	GTt	--t	62	1	0.016129	515-517
ORF1ab/nsp1	84	V84A	V84A	nonsyn	gTt	gCt	49	46	0.938776	515-517
ORF1ab/nsp1	84	V84A	V84A	nonsyn	gTT	gCC	49	2	0.0408163	515-517
ORF1ab/nsp1	84	V84A	V84A	nonsyn	gTT	gCA	49	1	0.0204082	515-517
ORF1ab/nsp1	84	V84F	V84F	nonsyn	Gtt	Ttt	47	46	0.978723	515-517
ORF1ab/nsp1	84	V84F	V84F	nonsyn	GtT	TtC	47	1	0.0212766	515-517
ORF1ab/nsp1	84	V84G	V84G	nonsyn	gTt	gGt	20	20	1	515-517
ORF1ab/nsp1	84	V84D	V84D	nonsyn	gTt	gAt	6	6	1	515-517
ORF1ab/nsp1	84	V84E	V84E	nonsyn	gTT	gAG	5	3	0.6	515-517
ORF1ab/nsp1	84	V84E	V84E	nonsyn	gTT	gAA	5	2	0.4	515-517
ORF1ab/nsp1	84	V84H	V84H	nonsyn	GTt	CAt	3	3	1	515-517
ORF1ab/nsp1	84	V84L	V84L	nonsyn	GtT	CtG	3	1	0.333333	515-517
ORF1ab/nsp1	84	V84L	V84L	nonsyn	GtT	TtA	3	1	0.333333	515-517
ORF1ab/nsp1	84	V84L	V84L	nonsyn	Gtt	Ctt	3	1	0.333333	515-517
ORF1ab/nsp1	84	V84R	V84R	nonsyn	GTT	CGC	1	1	1	515-517
ORF1ab/nsp1	84	V84N	V84N	nonsyn	GTt	AAt	1	1	1	515-517
ORF1ab/nsp1	84	V84S	V84S	nonsyn	GTT	TCA	1	1	1	515-517
ORF1ab/nsp1	84	V84Q	V84Q	nonsyn	GTT	CAG	1	1	1	515-517

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp1	84	V84del	GTT	---	53437	53437	All	0.01022
ORF1ab/nsp1	84	V84del	GTT	---	11515	11515	B.1.617.2	0.043359
ORF1ab/nsp1	84	V84del	GTT	---	7284	7284	AY.4	0.011337
ORF1ab/nsp1	84	V84V	gtT	gtG	4256	4787	All	0.000814
ORF1ab/nsp1	84	V84V	gtT	gtC	482	4787	All	0.000092
ORF1ab/nsp1	84	V84V	gtT	gtA	49	4787	All	0.000009
ORF1ab/nsp1	84	V84del	GTT	---	4205	4205	B.1.1.7	0.003764
ORF1ab/nsp1	84	V84del	GTT	---	3152	3152	AY.25	0.018959
ORF1ab/nsp1	84	V84del	GTT	---	2632	2632	AY.26	0.074512
ORF1ab/nsp1	84	V84del1	GTT	-NN	836	1833	All	0.00016
ORF1ab/nsp1	84	V84del1	GtT	-tN	806	1833	All	0.000154
ORF1ab/nsp1	84	V84del1	Gtt	-tt	106	1833	All	0.00002
ORF1ab/nsp1	84	V84del1	gtT	gt-	34	1833	All	0.000007
ORF1ab/nsp1	84	V84del1	gTT	g-N	22	1833	All	0.000004
ORF1ab/nsp1	84	V84del1	GTt	-Nt	21	1833	All	0.000004
ORF1ab/nsp1	84	V84del1	gTt	g-t	8	1833	All	0.000002
ORF1ab/nsp1	84	V84del	GTT	---	1804	1804	AY.43	0.007993
ORF1ab/nsp1	84	V84del	GTT	---	1801	1801	AY.3	0.017913
ORF1ab/nsp1	84	V84del	GTT	---	1332	1332	AY.44	0.008108
ORF1ab/nsp1	84	V84del	GTT	---	944	944	AY.103	0.005861
ORF1ab/nsp1	84	V84V	gtT	gtG	935	935	B.1.1.298	0.806034
ORF1ab/nsp1	84	V84del	GTT	---	703	703	B.1.621	0.062229
ORF1ab/nsp1	84	V84V	gtT	gtG	681	687	AY.4	0.00106
ORF1ab/nsp1	84	V84V	gtT	gtC	6	687	AY.4	0.000009
ORF1ab/nsp1	84	V84del	GTT	---	634	634	AY.75	0.035518
ORF1ab/nsp1	84	V84del	GTT	---	631	631	AY.4.2	0.013686
ORF1ab/nsp1	84	V84del	GTT	---	611	611	AY.20	0.023747
ORF1ab/nsp1	84	V84del	GTT	---	597	597	B.1.429	0.014047
ORF1ab/nsp1	84	V84del	GTT	---	574	574	AY.120	0.021341
ORF1ab/nsp1	84	V84del	GTT	---	539	539	AY.39	0.013319
ORF1ab/nsp1	84	V84del	GTT	---	519	519	AY.47	0.016144
ORF1ab/nsp1	84	V84del	GTT	---	453	453	B.1.2	0.003989
ORF1ab/nsp1	84	V84del	GTT	---	402	402	AY.5	0.008301
ORF1ab/nsp1	84	V84V	gtT	gtG	350	391	B.1.617.2	0.001318
ORF1ab/nsp1	84	V84V	gtT	gtC	41	391	B.1.617.2	0.000154
ORF1ab/nsp1	84	V84del	GTT	---	389	389	AY.14	0.034237
ORF1ab/nsp1	84	V84del	GTT	---	369	369	B.1	0.00338
ORF1ab/nsp1	84	V84del1	GtT	-tN	158	331	AY.103	0.000981
ORF1ab/nsp1	84	V84del1	GTT	-NN	149	331	AY.103	0.000925
ORF1ab/nsp1	84	V84del1	Gtt	-tt	19	331	AY.103	0.000118
ORF1ab/nsp1	84	V84del1	GTt	-Nt	3	331	AY.103	0.000019
ORF1ab/nsp1	84	V84del1	gTT	g-N	1	331	AY.103	0.000006
ORF1ab/nsp1	84	V84del1	gtT	gt-	1	331	AY.103	0.000006
ORF1ab/nsp1	84	V84del	GTT	---	330	330	B.1.526	0.007756
ORF1ab/nsp1	84	V84V	gtT	gtG	277	327	B.1.1.7	0.000248
ORF1ab/nsp1	84	V84V	gtT	gtC	46	327	B.1.1.7	0.000041
ORF1ab/nsp1	84	V84V	gtT	gtA	4	327	B.1.1.7	0.000004
ORF1ab/nsp1	84	V84del1	GTT	-NN	155	316	AY.44	0.000943
ORF1ab/nsp1	84	V84del1	GtT	-tN	144	316	AY.44	0.000876
ORF1ab/nsp1	84	V84del1	Gtt	-tt	14	316	AY.44	0.000085
ORF1ab/nsp1	84	V84del1	GTt	-Nt	2	316	AY.44	0.000012
ORF1ab/nsp1	84	V84del1	gTt	g-t	1	316	AY.44	0.000006
ORF1ab/nsp1	84	V84del	GTT	---	315	315	P.1	0.004963
ORF1ab/nsp1	84	V84del	GTT	---	310	310	AY.118	0.019421
ORF1ab/nsp1	84	V84del	GTT	---	298	298	B.1.427	0.015048
ORF1ab/nsp1	84	V84I	Gtt	Att	295	295	All	0.000056
ORF1ab/nsp1	84	V84del	GTT	---	282	282	AY.102	0.007477
ORF1ab/nsp1	84	V84del	GTT	---	275	275	AY.46.6	0.019857
ORF1ab/nsp1	84	V84del	GTT	---	265	265	AY.19	0.302166
ORF1ab/nsp1	84	V84del	GTT	---	264	264	B.1.1.519	0.010484
ORF1ab/nsp1	84	V84del1	GtT	-tN	115	246	AY.25	0.000692
ORF1ab/nsp1	84	V84del1	GTT	-NN	111	246	AY.25	0.000668
ORF1ab/nsp1	84	V84del1	Gtt	-tt	13	246	AY.25	0.000078
ORF1ab/nsp1	84	V84del1	GTt	-Nt	3	246	AY.25	0.000018
ORF1ab/nsp1	84	V84del1	gTT	g-N	2	246	AY.25	0.000012
ORF1ab/nsp1	84	V84del1	gTt	g-t	2	246	AY.25	0.000012
ORF1ab/nsp1	84	V84del	GTT	---	246	246	B.1.1	0.004463
ORF1ab/nsp1	84	V84del1	GTT	-NN	109	243	B.1.617.2	0.00041
ORF1ab/nsp1	84	V84del1	GtT	-tN	105	243	B.1.617.2	0.000395
ORF1ab/nsp1	84	V84del1	Gtt	-tt	17	243	B.1.617.2	0.000064
ORF1ab/nsp1	84	V84del1	gtT	gt-	6	243	B.1.617.2	0.000023
ORF1ab/nsp1	84	V84del1	gTT	g-N	4	243	B.1.617.2	0.000015
ORF1ab/nsp1	84	V84del1	GTt	-Nt	2	243	B.1.617.2	0.000008
ORF1ab/nsp1	84	V84V	gtT	gtG	146	215	AY.43	0.000647
ORF1ab/nsp1	84	V84V	gtT	gtC	69	215	AY.43	0.000306
ORF1ab/nsp1	84	V84del	GTT	---	206	206	AY.39.1	0.00816
ORF1ab/nsp1	84	V84del	GTT	---	201	201	AY.8	0.121818
ORF1ab/nsp1	84	V84del	GTT	---	197	197	AY.3.1	0.016796
ORF1ab/nsp1	84	V84del	GTT	---	192	192	AY.6	0.007897
ORF1ab/nsp1	84	V84del	GTT	---	191	191	AY.116.1	0.059483
ORF1ab/nsp1	84	V84del	GTT	---	187	187	AY.42	0.007523
ORF1ab/nsp1	84	V84del	GTT	---	184	184	AY.117	0.015551
ORF1ab/nsp1	84	V84del	GTT	---	180	180	AY.119	0.006355
ORF1ab/nsp1	84	V84del	GTT	---	175	175	AY.2	0.062322
ORF1ab/nsp1	84	V84del	GTT	---	175	175	AY.27	0.011326
ORF1ab/nsp1	84	V84del	GTT	---	166	166	AY.46.5	0.032937
ORF1ab/nsp1	84	V84del	GTT	---	158	158	B.1.177	0.00208
ORF1ab/nsp1	84	V84del	GTT	---	152	152	AY.29	0.002398
ORF1ab/nsp1	84	V84del	GTT	---	148	148	AY.13	0.023825
ORF1ab/nsp1	84	V84del	GTT	---	147	147	AY.9.2	0.005399
ORF1ab/nsp1	84	V84V	gtT	gtG	93	140	AY.44	0.000566
ORF1ab/nsp1	84	V84V	gtT	gtA	27	140	AY.44	0.000164
ORF1ab/nsp1	84	V84V	gtT	gtC	20	140	AY.44	0.000122
ORF1ab/nsp1	84	V84del	GTT	---	137	137	AY.34	0.013284
ORF1ab/nsp1	84	V84del	GTT	---	132	132	AY.46	0.013739
ORF1ab/nsp1	84	V84del	GTT	---	131	131	AY.35	0.030529
ORF1ab/nsp1	84	V84del	GTT	---	131	131	B.1.637	0.009573
ORF1ab/nsp1	84	V84del	GTT	---	130	130	AY.33	0.008681
ORF1ab/nsp1	84	V84del	GTT	---	130	130	AY.46.4	0.021385
ORF1ab/nsp1	84	V84del1	GtT	-tN	59	129	AY.3	0.000587
ORF1ab/nsp1	84	V84del1	GTT	-NN	59	129	AY.3	0.000587
ORF1ab/nsp1	84	V84del1	Gtt	-tt	7	129	AY.3	0.00007
ORF1ab/nsp1	84	V84del1	gtT	gt-	2	129	AY.3	0.00002
ORF1ab/nsp1	84	V84del1	gTT	g-N	1	129	AY.3	0.00001
ORF1ab/nsp1	84	V84del1	gTt	g-t	1	129	AY.3	0.00001
ORF1ab/nsp1	84	V84del	GTT	---	128	128	B.1.234	0.016889
ORF1ab/nsp1	84	V84V	gtT	gtG	123	124	AY.26	0.003482
ORF1ab/nsp1	84	V84V	gtT	gtA	1	124	AY.26	0.000028
ORF1ab/nsp1	84	V84del	GTT	---	123	123	AY.120.1	0.039486
ORF1ab/nsp1	84	V84del	GTT	---	122	122	AY.9	0.008247
ORF1ab/nsp1	84	V84del	GTT	---	121	121	AY.10	0.064123
ORF1ab/nsp1	84	V84V	gtT	gtG	105	120	AY.25	0.000632
ORF1ab/nsp1	84	V84V	gtT	gtC	15	120	AY.25	0.00009
ORF1ab/nsp1	84	V84del	GTT	---	120	120	B.1.1.214	0.006655
ORF1ab/nsp1	84	V84del	GTT	---	113	113	AY.74	0.013068
ORF1ab/nsp1	84	V84V	gtT	gtG	107	107	AY.120	0.003978
ORF1ab/nsp1	84	V84del	GTT	---	106	106	AY.54	0.010107
ORF1ab/nsp1	84	V84del	GTT	---	104	104	P.1.17	0.016823
ORF1ab/nsp1	84	V84V	gtT	gtG	102	102	AY.3	0.001015
ORF1ab/nsp1	84	V84del	GTT	---	102	102	B.1.351	0.003032
ORF1ab/nsp1	84	V84del	GTT	---	88	88	AY.113	0.01253
ORF1ab/nsp1	84	V84del	GTT	---	88	88	AY.99.2	0.00811
ORF1ab/nsp1	84	V84del	GTT	---	87	87	B	0.01112
ORF1ab/nsp1	84	V84V	gtT	gtG	77	86	AY.103	0.000478
ORF1ab/nsp1	84	V84V	gtT	gtC	7	86	AY.103	0.000043
ORF1ab/nsp1	84	V84V	gtT	gtA	2	86	AY.103	0.000012
ORF1ab/nsp1	84	V84del	GTT	---	84	84	AY.100	0.003865
ORF1ab/nsp1	84	V84I	Gtt	Att	84	84	AY.43	0.000372
ORF1ab/nsp1	84	V84V	gtT	gtG	83	83	AY.98	0.006557
ORF1ab/nsp1	84	V84del	GTT	---	82	82	AY.1	0.03245
ORF1ab/nsp1	84	V84del	GTT	---	80	80	AY.9.1	0.006698
ORF1ab/nsp1	84	V84V	gtT	gtC	79	80	B.1.628	0.027837
ORF1ab/nsp1	84	V84V	gtT	gtG	1	80	B.1.628	0.000352
ORF1ab/nsp1	84	V84del	GTT	---	80	80	P.1.10	0.021558
ORF1ab/nsp1	84	V84del1	GTT	-NN	40	79	AY.26	0.001132
ORF1ab/nsp1	84	V84del1	GtT	-tN	33	79	AY.26	0.000934
ORF1ab/nsp1	84	V84del1	GTt	-Nt	3	79	AY.26	0.000085
ORF1ab/nsp1	84	V84del1	Gtt	-tt	2	79	AY.26	0.000057
ORF1ab/nsp1	84	V84del1	gtT	gt-	1	79	AY.26	0.000028
ORF1ab/nsp1	84	V84del	GTT	---	78	78	B.1.177.21	0.005965
ORF1ab/nsp1	84	V84del	GTT	---	77	77	AY.7.1	0.008678
ORF1ab/nsp1	84	V84del	GTT	---	74	74	AY.7	0.014504
ORF1ab/nsp1	84	V84del	GTT	---	73	73	B.1.160	0.002277
ORF1ab/nsp1	84	V84del	GTT	---	72	72	AY.48	0.033488
ORF1ab/nsp1	84	V84del	GTT	---	69	69	AY.114	0.015946
ORF1ab/nsp1	84	V84del	GTT	---	68	68	P.1.14	0.00325
ORF1ab/nsp1	84	V84del	GTT	---	65	65	AY.65	0.034648
ORF1ab/nsp1	84	V84V	gtT	gtG	62	64	AY.4.2	0.001345
ORF1ab/nsp1	84	V84V	gtT	gtC	2	64	AY.4.2	0.000043
ORF1ab/nsp1	84	V84del	GTT	---	64	64	AY.98	0.005056
ORF1ab/nsp1	84	V84del	GTT	---	64	64	B.1.258	0.004259
ORF1ab/nsp1	84	V84del	GTT	---	63	63	AY.4.5	0.006772
ORF1ab/nsp1	84	V84del	GTT	---	63	63	B.1.1.318	0.01901
ORF1ab/nsp1	84	V84del2	gTT	g--	58	62	All	0.000011
ORF1ab/nsp1	84	V84del2	GTT	--N	3	62	All	0.000001
ORF1ab/nsp1	84	V84del2	GTt	--t	1	62	All	0
ORF1ab/nsp1	84	V84del	GTT	---	58	58	AY.4.2.1	0.008641
ORF1ab/nsp1	84	V84V	gtT	gtG	58	58	AY.75	0.003249
ORF1ab/nsp1	84	V84del	GTT	---	57	57	B.1.243	0.003966
ORF1ab/nsp1	84	V84del	GTT	---	57	57	B.1.628	0.020085
ORF1ab/nsp1	84	V84del	GTT	---	56	56	AY.23	0.003906
ORF1ab/nsp1	84	V84del	GTT	---	56	56	AZ.3	0.085106
ORF1ab/nsp1	84	V84del	GTT	---	55	55	AY.16	0.020881
ORF1ab/nsp1	84	V84del	GTT	---	55	55	B.1.621.1	0.02782
ORF1ab/nsp1	84	V84del	GTT	---	54	54	AY.111	0.00989
ORF1ab/nsp1	84	V84del	GTT	---	52	52	AY.12	0.016435
ORF1ab/nsp1	84	V84del	GTT	---	52	52	AY.39.1.1	0.037681
ORF1ab/nsp1	84	V84del1	GTT	-NN	29	51	AY.20	0.001127
ORF1ab/nsp1	84	V84del1	GtT	-tN	17	51	AY.20	0.000661
ORF1ab/nsp1	84	V84del1	Gtt	-tt	3	51	AY.20	0.000117
ORF1ab/nsp1	84	V84del1	GTt	-Nt	2	51	AY.20	0.000078
ORF1ab/nsp1	84	V84V	gtT	gtG	32	51	B.1	0.000293
ORF1ab/nsp1	84	V84V	gtT	gtC	12	51	B.1	0.00011
ORF1ab/nsp1	84	V84V	gtT	gtA	7	51	B.1	0.000064
ORF1ab/nsp1	84	V84del	GTT	---	50	50	AY.36	0.007411
ORF1ab/nsp1	84	V84V	gtT	gtG	50	50	AY.56	0.080257
ORF1ab/nsp1	84	V84A	gTt	gCt	46	49	All	0.000009
ORF1ab/nsp1	84	V84A	gTT	gCC	2	49	All	0
ORF1ab/nsp1	84	V84A	gTT	gCA	1	49	All	0
ORF1ab/nsp1	84	V84del	GTT	---	49	49	AY.37	0.015487
ORF1ab/nsp1	84	V84del	GTT	---	49	49	C.37	0.005687
ORF1ab/nsp1	84	V84del	GTT	---	48	48	AY.121	0.006495
ORF1ab/nsp1	84	V84V	gtT	gtG	39	48	AY.39	0.000964
ORF1ab/nsp1	84	V84V	gtT	gtC	9	48	AY.39	0.000222
ORF1ab/nsp1	84	V84F	Gtt	Ttt	46	47	All	0.000009
ORF1ab/nsp1	84	V84F	GtT	TtC	1	47	All	0
ORF1ab/nsp1	84	V84del	GTT	---	46	46	AY.45	0.005597
ORF1ab/nsp1	84	V84del	GTT	---	46	46	AY.75.1	0.008294
ORF1ab/nsp1	84	V84I	Gtt	Att	45	45	B.1.1.7	0.00004
ORF1ab/nsp1	84	V84del	GTT	---	43	43	AY.53	0.012363
ORF1ab/nsp1	84	V84del	GTT	---	43	43	B.1.258.17	0.004471
ORF1ab/nsp1	84	V84del	GTT	---	42	42	AY.110	0.004733
ORF1ab/nsp1	84	V84del1	GtT	-tN	21	40	AY.47	0.000653
ORF1ab/nsp1	84	V84del1	GTT	-NN	18	40	AY.47	0.00056
ORF1ab/nsp1	84	V84del1	Gtt	-tt	1	40	AY.47	0.000031
ORF1ab/nsp1	84	V84del	GTT	---	39	39	AY.70	0.008132
ORF1ab/nsp1	84	V84del	GTT	---	39	39	B.1.596	0.003398
ORF1ab/nsp1	84	V84V	gtT	gtG	34	38	AY.119	0.0012
ORF1ab/nsp1	84	V84V	gtT	gtC	4	38	AY.119	0.000141
ORF1ab/nsp1	84	V84del	GTT	---	36	36	A.2.5	0.017964
ORF1ab/nsp1	84	V84del1	GTT	-NN	15	36	AY.4	0.000023
ORF1ab/nsp1	84	V84del1	GtT	-tN	8	36	AY.4	0.000012
ORF1ab/nsp1	84	V84del1	gTT	g-N	6	36	AY.4	0.000009
ORF1ab/nsp1	84	V84del1	gtT	gt-	5	36	AY.4	0.000008
ORF1ab/nsp1	84	V84del1	GTt	-Nt	1	36	AY.4	0.000002
ORF1ab/nsp1	84	V84del1	Gtt	-tt	1	36	AY.4	0.000002
ORF1ab/nsp1	84	V84del	GTT	---	36	36	AY.90	0.024641
ORF1ab/nsp1	84	V84V	gtT	gtG	36	36	AY.98.1	0.001744
ORF1ab/nsp1	84	V84del	GTT	---	36	36	Q.3	0.005221
ORF1ab/nsp1	84	V84del	GTT	---	35	35	AY.107	0.016309
ORF1ab/nsp1	84	V84del	GTT	---	34	34	AY.105	0.021865
ORF1ab/nsp1	84	V84del	GTT	---	34	34	AY.11	0.045515
ORF1ab/nsp1	84	V84del	GTT	---	34	34	AY.46.2	0.021601
ORF1ab/nsp1	84	V84del	GTT	---	34	34	AY.62	0.014815
ORF1ab/nsp1	84	V84del1	GtT	-tN	20	34	AY.75	0.00112
ORF1ab/nsp1	84	V84del1	GTT	-NN	10	34	AY.75	0.00056
ORF1ab/nsp1	84	V84del1	Gtt	-tt	4	34	AY.75	0.000224
ORF1ab/nsp1	84	V84del	GTT	---	34	34	B.1.1.50	0.023082
ORF1ab/nsp1	84	V84del	GTT	---	32	32	AY.5.3	0.010796
ORF1ab/nsp1	84	V84del	GTT	---	32	32	AY.93	0.008738
ORF1ab/nsp1	84	V84V	gtT	gtG	23	32	B.1.177	0.000303
ORF1ab/nsp1	84	V84V	gtT	gtC	9	32	B.1.177	0.000119
ORF1ab/nsp1	84	V84del	GTT	---	31	31	B.1.1.222	0.006324
ORF1ab/nsp1	84	V84V	gtT	gtG	29	30	AY.102	0.000769
ORF1ab/nsp1	84	V84V	gtT	gtC	1	30	AY.102	0.000027
ORF1ab/nsp1	84	V84del	GTT	---	30	30	AY.4.1	0.022124
ORF1ab/nsp1	84	V84V	gtT	gtG	27	30	AY.5	0.000558
ORF1ab/nsp1	84	V84V	gtT	gtC	3	30	AY.5	0.000062
ORF1ab/nsp1	84	V84del	GTT	---	30	30	AY.52	0.02443
ORF1ab/nsp1	84	V84V	gtT	gtG	22	30	B.1.2	0.000194
ORF1ab/nsp1	84	V84V	gtT	gtC	8	30	B.1.2	0.00007
ORF1ab/nsp1	84	V84del1	GTT	-NN	17	30	B.1.429	0.0004
ORF1ab/nsp1	84	V84del1	GtT	-tN	8	30	B.1.429	0.000188
ORF1ab/nsp1	84	V84del1	Gtt	-tt	3	30	B.1.429	0.000071
ORF1ab/nsp1	84	V84del1	gTT	g-N	2	30	B.1.429	0.000047
ORF1ab/nsp1	84	V84V	gtT	gtC	15	30	B.1.526	0.000353
ORF1ab/nsp1	84	V84V	gtT	gtG	13	30	B.1.526	0.000306
ORF1ab/nsp1	84	V84V	gtT	gtA	2	30	B.1.526	0.000047
ORF1ab/nsp1	84	V84del	GTT	---	30	30	B.1.623	0.016094
ORF1ab/nsp1	84	V84del	GTT	---	29	29	AY.106	0.009712
ORF1ab/nsp1	84	V84del	GTT	---	28	28	AY.51	0.025455
ORF1ab/nsp1	84	V84del	GTT	---	28	28	AY.64	0.016667
ORF1ab/nsp1	84	V84V	gtT	gtG	28	28	AY.71	0.013302
ORF1ab/nsp1	84	V84del	GTT	---	27	27	AY.92	0.007756
ORF1ab/nsp1	84	V84V	gtT	gtC	20	27	B.1.1	0.000363
ORF1ab/nsp1	84	V84V	gtT	gtG	7	27	B.1.1	0.000127
ORF1ab/nsp1	84	V84del1	GtT	-tN	13	26	AY.14	0.001144
ORF1ab/nsp1	84	V84del1	GTT	-NN	11	26	AY.14	0.000968
ORF1ab/nsp1	84	V84del1	GTt	-Nt	1	26	AY.14	0.000088
ORF1ab/nsp1	84	V84del1	gtT	gt-	1	26	AY.14	0.000088
ORF1ab/nsp1	84	V84del	GTT	---	26	26	AY.71	0.012352
ORF1ab/nsp1	84	V84del1	GtT	-tN	13	25	AY.39	0.000321
ORF1ab/nsp1	84	V84del1	GTT	-NN	8	25	AY.39	0.000198
ORF1ab/nsp1	84	V84del1	Gtt	-tt	3	25	AY.39	0.000074
ORF1ab/nsp1	84	V84del1	gTT	g-N	1	25	AY.39	0.000025
ORF1ab/nsp1	84	V84del	GTT	---	25	25	AY.80	0.028217
ORF1ab/nsp1	84	V84del	GTT	---	24	24	AY.38	0.011982
ORF1ab/nsp1	84	V84V	gtT	gtG	24	24	B.1.1.519	0.000953
ORF1ab/nsp1	84	V84del	GTT	---	24	24	B.1.525	0.002716
ORF1ab/nsp1	84	V84del	GTT	---	23	23	AY.116	0.006596
ORF1ab/nsp1	84	V84V	gtT	gtG	23	23	AY.46.6	0.001661
ORF1ab/nsp1	84	V84V	gtT	gtG	22	23	AY.61	0.002305
ORF1ab/nsp1	84	V84V	gtT	gtA	1	23	AY.61	0.000105
ORF1ab/nsp1	84	V84del	GTT	---	23	23	B.1.438.1	0.002467
ORF1ab/nsp1	84	V84V	gtT	gtG	13	23	B.1.621	0.001151
ORF1ab/nsp1	84	V84V	gtT	gtC	9	23	B.1.621	0.000797
ORF1ab/nsp1	84	V84V	gtT	gtA	1	23	B.1.621	0.000089
ORF1ab/nsp1	84	V84del	GTT	---	23	23	B.40	0.008379
ORF1ab/nsp1	84	V84del	GTT	---	22	22	AY.24	0.009483
ORF1ab/nsp1	84	V84del	GTT	---	22	22	AY.46.3	0.020542
ORF1ab/nsp1	84	V84del	GTT	---	22	22	AY.5.4	0.006087
ORF1ab/nsp1	84	V84del	GTT	---	22	22	AY.77	0.024803
ORF1ab/nsp1	84	V84V	gtT	gtG	22	22	AY.9.2	0.000808
ORF1ab/nsp1	84	V84del1	GTT	-NN	11	22	B.1.1.7	0.00001
ORF1ab/nsp1	84	V84del1	GtT	-tN	8	22	B.1.1.7	0.000007
ORF1ab/nsp1	84	V84del1	gTT	g-N	1	22	B.1.1.7	0.000001
ORF1ab/nsp1	84	V84del1	gTt	g-t	1	22	B.1.1.7	0.000001
ORF1ab/nsp1	84	V84del1	Gtt	-tt	1	22	B.1.1.7	0.000001
ORF1ab/nsp1	84	V84del	GTT	---	22	22	R.1	0.00198
ORF1ab/nsp1	84	V84V	gtT	gtG	21	21	AY.20	0.000816
ORF1ab/nsp1	84	V84del	GTT	---	21	21	AY.61	0.0022
ORF1ab/nsp1	84	V84del	GTT	---	21	21	B.1.1.434	0.00732
ORF1ab/nsp1	84	V84del	GTT	---	21	21	B.1.517	0.008967
ORF1ab/nsp1	84	V84del	GTT	---	21	21	D.2	0.001576
ORF1ab/nsp1	84	V84G	gTt	gGt	20	20	All	0.000004
ORF1ab/nsp1	84	V84del	GTT	---	20	20	AY.109	0.014793
ORF1ab/nsp1	84	V84del	GTT	---	20	20	AY.16.1	0.009398
ORF1ab/nsp1	84	V84del	GTT	---	20	20	AY.60	0.018762
ORF1ab/nsp1	84	V84del	GTT	---	20	20	AY.94	0.008853
ORF1ab/nsp1	84	V84I	Gtt	Att	20	20	B.1.1.448	0.04065
ORF1ab/nsp1	84	V84V	gtT	gtG	19	19	AY.118	0.00119
ORF1ab/nsp1	84	V84V	gtT	gtG	15	19	P.1	0.000236
ORF1ab/nsp1	84	V84V	gtT	gtC	4	19	P.1	0.000063
ORF1ab/nsp1	84	V84del	GTT	---	18	18	AY.120.2.1	0.008969
ORF1ab/nsp1	84	V84del	GTT	---	18	18	AY.4.4	0.007365
ORF1ab/nsp1	84	V84V	gtT	gtG	16	18	AY.47	0.000498
ORF1ab/nsp1	84	V84V	gtT	gtC	2	18	AY.47	0.000062
ORF1ab/nsp1	84	V84V	gtT	gtC	16	18	B.1.1.434	0.005577
ORF1ab/nsp1	84	V84V	gtT	gtG	2	18	B.1.1.434	0.000697
ORF1ab/nsp1	84	V84del	GTT	---	18	18	B.1.1.70	0.006139
ORF1ab/nsp1	84	V84I	Gtt	Att	17	17	B.1.351	0.000505
ORF1ab/nsp1	84	V84del	GTT	---	17	17	P.2	0.003173
ORF1ab/nsp1	84	V84del	GTT	---	16	16	AD.2	0.003503
ORF1ab/nsp1	84	V84del	GTT	---	16	16	AU.1	0.020253
ORF1ab/nsp1	84	V84del1	GtT	-tN	8	16	AY.118	0.000501
ORF1ab/nsp1	84	V84del1	GTT	-NN	5	16	AY.118	0.000313
ORF1ab/nsp1	84	V84del1	Gtt	-tt	2	16	AY.118	0.000125
ORF1ab/nsp1	84	V84del1	gTt	g-t	1	16	AY.118	0.000063
ORF1ab/nsp1	84	V84I	Gtt	Att	16	16	AY.4	0.000025
ORF1ab/nsp1	84	V84I	Gtt	Att	16	16	AY.44	0.000097
ORF1ab/nsp1	84	V84del	GTT	---	16	16	AY.7.2	0.008949
ORF1ab/nsp1	84	V84del	GTT	---	16	16	B.1.1.284	0.001718
ORF1ab/nsp1	84	V84del	GTT	---	16	16	B.1.1.39	0.008155
ORF1ab/nsp1	84	V84del	GTT	---	16	16	B.1.400	0.006864
ORF1ab/nsp1	84	V84del1	GTT	-NN	9	16	B.1.427	0.000454
ORF1ab/nsp1	84	V84del1	GtT	-tN	6	16	B.1.427	0.000303
ORF1ab/nsp1	84	V84del1	Gtt	-tt	1	16	B.1.427	0.00005
ORF1ab/nsp1	84	V84del	GTT	---	16	16	P.1.1	0.005083
ORF1ab/nsp1	84	V84V	gtT	gtG	14	15	AY.100	0.000644
ORF1ab/nsp1	84	V84V	gtT	gtC	1	15	AY.100	0.000046
ORF1ab/nsp1	84	V84del2	gTT	g--	14	15	AY.4	0.000022
ORF1ab/nsp1	84	V84del2	GTT	--N	1	15	AY.4	0.000002
ORF1ab/nsp1	84	V84del	GTT	---	15	15	AY.88	0.013263
ORF1ab/nsp1	84	V84del	GTT	---	15	15	B.1.120	0.115385
ORF1ab/nsp1	84	V84V	gtT	gtG	11	15	B.1.221	0.000781
ORF1ab/nsp1	84	V84V	gtT	gtC	4	15	B.1.221	0.000284
ORF1ab/nsp1	84	V84del	GTT	---	15	15	P.1.13	0.013477
ORF1ab/nsp1	84	V84del1	GTT	-NN	7	14	AY.116.1	0.00218
ORF1ab/nsp1	84	V84del1	GtT	-tN	6	14	AY.116.1	0.001869
ORF1ab/nsp1	84	V84del1	GTt	-Nt	1	14	AY.116.1	0.000311
ORF1ab/nsp1	84	V84del1	GTT	-NN	7	14	AY.13	0.001127
ORF1ab/nsp1	84	V84del1	GtT	-tN	5	14	AY.13	0.000805
ORF1ab/nsp1	84	V84del1	gtT	gt-	1	14	AY.13	0.000161
ORF1ab/nsp1	84	V84del1	GTt	-Nt	1	14	AY.13	0.000161
ORF1ab/nsp1	84	V84V	gtT	gtG	14	14	AY.24	0.006034
ORF1ab/nsp1	84	V84V	gtT	gtG	14	14	AY.29	0.000221
ORF1ab/nsp1	84	V84del	GTT	---	14	14	AY.98.1	0.000678
ORF1ab/nsp1	84	V84V	gtT	gtG	14	14	B.1.243	0.000974
ORF1ab/nsp1	84	V84V	gtT	gtG	8	14	B.1.258.17	0.000832
ORF1ab/nsp1	84	V84V	gtT	gtC	6	14	B.1.258.17	0.000624
ORF1ab/nsp1	84	V84del	GTT	---	14	14	B.1.497	0.004407
ORF1ab/nsp1	84	V84del	GTT	---	14	14	P.1.16	0.005238
ORF1ab/nsp1	84	V84del	GTT	---	13	13	A.15	0.206349
ORF1ab/nsp1	84	V84del1	GTT	-NN	8	13	AY.3.1	0.000682
ORF1ab/nsp1	84	V84del1	Gtt	-tt	3	13	AY.3.1	0.000256
ORF1ab/nsp1	84	V84del1	GtT	-tN	2	13	AY.3.1	0.000171
ORF1ab/nsp1	84	V84V	gtT	gtG	13	13	AY.39.1	0.000515
ORF1ab/nsp1	84	V84del	GTT	---	13	13	AY.41	0.003821
ORF1ab/nsp1	84	V84V	gtT	gtG	13	13	AY.7	0.002548
ORF1ab/nsp1	84	V84del	GTT	---	13	13	B.1.1.416	0.011765
ORF1ab/nsp1	84	V84del	GTT	---	13	13	B.1.575	0.003944
ORF1ab/nsp1	84	V84del	GTT	---	13	13	B.1.609	0.006232
ORF1ab/nsp1	84	V84V	gtT	gtG	9	12	AY.33	0.000601
ORF1ab/nsp1	84	V84V	gtT	gtC	3	12	AY.33	0.0002
ORF1ab/nsp1	84	V84del	GTT	---	12	12	AY.69	0.00224
ORF1ab/nsp1	84	V84del	GTT	---	12	12	AY.91	0.008766
ORF1ab/nsp1	84	V84del	GTT	---	12	12	B.1.177.54	0.007277
ORF1ab/nsp1	84	V84del	GTT	---	12	12	C.36.3	0.006807
ORF1ab/nsp1	84	V84del	GTT	---	12	12	P.1.17.1	0.010499
ORF1ab/nsp1	84	V84del1	GTT	-NN	8	11	AY.117	0.000676
ORF1ab/nsp1	84	V84del1	GtT	-tN	2	11	AY.117	0.000169
ORF1ab/nsp1	84	V84del1	Gtt	-tt	1	11	AY.117	0.000085
ORF1ab/nsp1	84	V84del	GTT	---	11	11	AY.22	0.023013
ORF1ab/nsp1	84	V84V	gtT	gtG	9	11	AY.23	0.000628
ORF1ab/nsp1	84	V84V	gtT	gtC	2	11	AY.23	0.000139
ORF1ab/nsp1	84	V84del	GTT	---	11	11	AY.55	0.010092
ORF1ab/nsp1	84	V84del	GTT	---	11	11	B.1.36	0.001605
ORF1ab/nsp1	84	V84V	gtT	gtG	8	11	B.1.429	0.000188
ORF1ab/nsp1	84	V84V	gtT	gtC	3	11	B.1.429	0.000071
ORF1ab/nsp1	84	V84del	GTT	---	11	11	B.1.561	0.004367
ORF1ab/nsp1	84	V84del	GTT	---	11	11	B.1.595	0.002871
ORF1ab/nsp1	84	V84del	GTT	---	11	11	B.1.617.1	0.001419
ORF1ab/nsp1	84	V84V	gtT	gtG	11	11	D.2	0.000825
ORF1ab/nsp1	84	V84del	GTT	---	11	11	P.1.15	0.002556
ORF1ab/nsp1	84	V84del1	GtT	-tN	6	10	AY.120.1	0.001926
ORF1ab/nsp1	84	V84del1	Gtt	-tt	2	10	AY.120.1	0.000642
ORF1ab/nsp1	84	V84del1	GTT	-NN	2	10	AY.120.1	0.000642
ORF1ab/nsp1	84	V84del	GTT	---	10	10	AY.120.2	0.012853
ORF1ab/nsp1	84	V84V	gtT	gtG	10	10	AY.46.5	0.001984
ORF1ab/nsp1	84	V84V	gtT	gtG	9	10	AY.6	0.00037
ORF1ab/nsp1	84	V84V	gtT	gtC	1	10	AY.6	0.000041
ORF1ab/nsp1	84	V84V	gtT	gtG	10	10	AY.60	0.009381
ORF1ab/nsp1	84	V84del	GTT	---	10	10	AY.73	0.006653
ORF1ab/nsp1	84	V84del	GTT	---	10	10	B.1.1.305	0.03861
ORF1ab/nsp1	84	V84del	GTT	---	10	10	B.1.1.369	0.004462
ORF1ab/nsp1	84	V84del	GTT	---	10	10	B.1.1.432	0.012658
ORF1ab/nsp1	84	V84V	gtT	gtC	10	10	B.1.177.52	0.017575
ORF1ab/nsp1	84	V84del	GTT	---	10	10	B.1.221	0.00071
ORF1ab/nsp1	84	V84V	gtT	gtG	9	9	AY.121	0.001218
ORF1ab/nsp1	84	V84del	GTT	---	9	9	AY.32	0.004792
ORF1ab/nsp1	84	V84V	gtT	gtG	8	9	AY.46	0.000833
ORF1ab/nsp1	84	V84V	gtT	gtC	1	9	AY.46	0.000104
ORF1ab/nsp1	84	V84V	gtT	gtC	6	9	AY.7.1	0.000676
ORF1ab/nsp1	84	V84V	gtT	gtG	3	9	AY.7.1	0.000338
ORF1ab/nsp1	84	V84del	GTT	---	9	9	AY.82	0.012212
ORF1ab/nsp1	84	V84del	GTT	---	9	9	AY.87	0.007494
ORF1ab/nsp1	84	V84del	GTT	---	9	9	B.1.1.37	0.001736
ORF1ab/nsp1	84	V84V	gtT	gtC	9	9	B.1.1.70	0.00307
ORF1ab/nsp1	84	V84del	GTT	---	9	9	B.1.160.26	0.021792
ORF1ab/nsp1	84	V84del	GTT	---	9	9	B.1.241	0.007305
ORF1ab/nsp1	84	V84del	GTT	---	9	9	B.1.258.16	0.01473
ORF1ab/nsp1	84	V84del	GTT	---	9	9	B.1.36.18	0.003782
ORF1ab/nsp1	84	V84del2	gTT	g--	9	9	B.1.617.2	0.000034
ORF1ab/nsp1	84	V84V	gtT	gtG	9	9	P.1.1	0.002859
ORF1ab/nsp1	84	V84del	GTT	---	9	9	P.1.12	0.004356
ORF1ab/nsp1	84	V84del	GTT	---	9	9	P.1.7	0.002874
ORF1ab/nsp1	84	V84del	GTT	---	9	9	Q.1	0.001137
ORF1ab/nsp1	84	V84del	GTT	---	8	8	AY.101	0.003923
ORF1ab/nsp1	84	V84V	gtT	gtG	8	8	AY.12	0.002528
ORF1ab/nsp1	84	V84I	Gtt	Att	8	8	AY.33	0.000534
ORF1ab/nsp1	84	V84del	GTT	---	8	8	AY.40	0.007715
ORF1ab/nsp1	84	V84V	gtT	gtG	8	8	AY.42	0.000322
ORF1ab/nsp1	84	V84del	GTT	---	8	8	AY.59	0.004237
ORF1ab/nsp1	84	V84del	GTT	---	8	8	AY.83	0.013793
ORF1ab/nsp1	84	V84del	GTT	---	8	8	AY.84	0.0035
ORF1ab/nsp1	84	V84del	GTT	---	8	8	B.1.1.207	0.009456
ORF1ab/nsp1	84	V84del1	GtT	-tN	4	8	B.1.1.519	0.000159
ORF1ab/nsp1	84	V84del1	GTT	-NN	4	8	B.1.1.519	0.000159
ORF1ab/nsp1	84	V84del	GTT	---	8	8	B.1.1.523	0.0125
ORF1ab/nsp1	84	V84A	gTt	gCt	7	8	B.1.1.7	0.000006
ORF1ab/nsp1	84	V84A	gTT	gCC	1	8	B.1.1.7	0.000001
ORF1ab/nsp1	84	V84del	GTT	---	8	8	B.1.111	0.009401
ORF1ab/nsp1	84	V84del	GTT	---	8	8	B.1.177.26	0.055944
ORF1ab/nsp1	84	V84del	GTT	---	8	8	B.1.177.43	0.011817
ORF1ab/nsp1	84	V84del	GTT	---	8	8	B.1.177.86	0.001468
ORF1ab/nsp1	84	V84del	GTT	---	8	8	B.1.214.2	0.004796
ORF1ab/nsp1	84	V84del	GTT	---	8	8	B.1.311	0.002197
ORF1ab/nsp1	84	V84del	GTT	---	8	8	B.1.349	0.005718
ORF1ab/nsp1	84	V84del	GTT	---	8	8	B.1.351.5	0.004796
ORF1ab/nsp1	84	V84I	Gtt	Att	8	8	B.1.404	0.010417
ORF1ab/nsp1	84	V84I	Gtt	Att	8	8	B.1.617.2	0.00003
ORF1ab/nsp1	84	V84del	GTT	---	7	7	A.2.5.2	0.011006
ORF1ab/nsp1	84	V84del	GTT	---	7	7	A.27	0.011589
ORF1ab/nsp1	84	V84V	gtT	gtG	7	7	AY.113	0.000997
ORF1ab/nsp1	84	V84V	gtT	gtG	7	7	AY.14	0.000616
ORF1ab/nsp1	84	V84del1	GtT	-tN	2	7	AY.2	0.000712
ORF1ab/nsp1	84	V84del1	GTT	-NN	2	7	AY.2	0.000712
ORF1ab/nsp1	84	V84del1	Gtt	-tt	1	7	AY.2	0.000356
ORF1ab/nsp1	84	V84del1	gtT	gt-	1	7	AY.2	0.000356
ORF1ab/nsp1	84	V84del1	gTT	g-N	1	7	AY.2	0.000356
ORF1ab/nsp1	84	V84I	Gtt	Att	7	7	AY.20	0.000272
ORF1ab/nsp1	84	V84V	gtT	gtG	6	7	AY.4.5	0.000645
ORF1ab/nsp1	84	V84V	gtT	gtC	1	7	AY.4.5	0.000107
ORF1ab/nsp1	84	V84del1	GtT	-tN	4	7	AY.46.4	0.000658
ORF1ab/nsp1	84	V84del1	GTT	-NN	3	7	AY.46.4	0.000494
ORF1ab/nsp1	84	V84del	GTT	---	7	7	AY.50	0.005596
ORF1ab/nsp1	84	V84del	GTT	---	7	7	AY.58	0.006352
ORF1ab/nsp1	84	V84del	GTT	---	7	7	AY.72	0.009524
ORF1ab/nsp1	84	V84del	GTT	---	7	7	AY.95	0.005327
ORF1ab/nsp1	84	V84del	GTT	---	7	7	AY.99	0.007345
ORF1ab/nsp1	84	V84del	GTT	---	7	7	B.1.1.304	0.019663
ORF1ab/nsp1	84	V84del	GTT	---	7	7	B.1.1.348	0.005573
ORF1ab/nsp1	84	V84del	GTT	---	7	7	B.1.177.81	0.001325
ORF1ab/nsp1	84	V84del	GTT	---	7	7	B.1.22	0.009223
ORF1ab/nsp1	84	V84del	GTT	---	7	7	B.1.240	0.001509
ORF1ab/nsp1	84	V84V	gtT	gtG	3	7	B.1.258	0.0002
ORF1ab/nsp1	84	V84V	gtT	gtA	2	7	B.1.258	0.000133
ORF1ab/nsp1	84	V84V	gtT	gtC	2	7	B.1.258	0.000133
ORF1ab/nsp1	84	V84del	GTT	---	7	7	B.1.351.2	0.002118
ORF1ab/nsp1	84	V84del	GTT	---	7	7	B.1.36.9	0.022508
ORF1ab/nsp1	84	V84del1	GTT	-NN	5	7	B.1.526	0.000118
ORF1ab/nsp1	84	V84del1	gtT	gt-	2	7	B.1.526	0.000047
ORF1ab/nsp1	84	V84del	GTT	---	7	7	B.1.551	0.009032
ORF1ab/nsp1	84	V84del	GTT	---	7	7	B.1.631	0.023569
ORF1ab/nsp1	84	V84del	GTT	---	7	7	C.36	0.006375
ORF1ab/nsp1	84	V84V	gtT	gtG	5	7	R.1	0.00045
ORF1ab/nsp1	84	V84V	gtT	gtC	2	7	R.1	0.00018
ORF1ab/nsp1	84	V84D	gTt	gAt	6	6	All	0.000001
ORF1ab/nsp1	84	V84V	gtT	gtG	6	6	AY.13	0.000966
ORF1ab/nsp1	84	V84V	gtT	gtG	6	6	AY.27	0.000388
ORF1ab/nsp1	84	V84del	GTT	---	6	6	AY.29.1	0.001323
ORF1ab/nsp1	84	V84del	GTT	---	6	6	AY.34.1	0.00306
ORF1ab/nsp1	84	V84V	gtT	gtG	6	6	AY.45	0.00073
ORF1ab/nsp1	84	V84del1	Gtt	-tt	2	6	AY.48	0.00093
ORF1ab/nsp1	84	V84del1	GTT	-NN	2	6	AY.48	0.00093
ORF1ab/nsp1	84	V84del1	GtT	-tN	2	6	AY.48	0.00093
ORF1ab/nsp1	84	V84del	GTT	---	6	6	AY.66	0.006417
ORF1ab/nsp1	84	V84del1	GTT	-NN	3	6	AY.67	0.001393
ORF1ab/nsp1	84	V84del1	GtT	-tN	2	6	AY.67	0.000929
ORF1ab/nsp1	84	V84del1	Gtt	-tt	1	6	AY.67	0.000464
ORF1ab/nsp1	84	V84del	GTT	---	6	6	AY.68	0.001642
ORF1ab/nsp1	84	V84del	GTT	---	6	6	AY.78	0.009245
ORF1ab/nsp1	84	V84del	GTT	---	6	6	AY.79	0.007264
ORF1ab/nsp1	84	V84V	gtT	gtG	6	6	AY.9	0.000406
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.1.1	0.00196
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.1.170	0.007481
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.1.232	0.010889
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.1.28	0.001867
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.1.298	0.005172
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.1.317	0.00247
ORF1ab/nsp1	84	V84V	gtT	gtC	6	6	B.1.1.322	0.052632
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.1.420	0.006036
ORF1ab/nsp1	84	V84F	Gtt	Ttt	6	6	B.1.1.7	0.000005
ORF1ab/nsp1	84	V84V	gtT	gtG	6	6	B.1.104	0.02214
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.110.1	0.6
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.128	0.003812
ORF1ab/nsp1	84	V84V	gtT	gtG	5	6	B.1.177.21	0.000382
ORF1ab/nsp1	84	V84V	gtT	gtC	1	6	B.1.177.21	0.000076
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.177.30	0.015075
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.177.44	0.003114
ORF1ab/nsp1	84	V84I	Gtt	Att	6	6	B.1.2	0.000053
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.232	0.003224
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.279	0.003082
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.36.29	0.003104
ORF1ab/nsp1	84	V84V	gtT	gtG	6	6	B.1.377	0.027397
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.380	0.039735
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.409	0.004687
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.466.2	0.002347
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.588	0.00546
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.630	0.031414
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.632	0.040268
ORF1ab/nsp1	84	V84del	GTT	---	6	6	B.1.634	0.020548
ORF1ab/nsp1	84	V84V	gtT	gtG	6	6	P.1.17	0.000971
ORF1ab/nsp1	84	V84del	GTT	---	6	6	Q.8	0.000989
ORF1ab/nsp1	84	V84del	GTT	---	5	5	A	0.001935
ORF1ab/nsp1	84	V84del	GTT	---	5	5	A.1	0.001409
ORF1ab/nsp1	84	V84del	GTT	---	5	5	A.2	0.003309
ORF1ab/nsp1	84	V84E	gTT	gAG	3	5	All	0.000001
ORF1ab/nsp1	84	V84E	gTT	gAA	2	5	All	0
ORF1ab/nsp1	84	V84del	GTT	---	5	5	AT.1	0.025641
ORF1ab/nsp1	84	V84A	gTt	gCt	5	5	AY.103	0.000031
ORF1ab/nsp1	84	V84I	Gtt	Att	5	5	AY.103	0.000031
ORF1ab/nsp1	84	V84V	gtT	gtG	5	5	AY.117	0.000423
ORF1ab/nsp1	84	V84V	gtT	gtG	5	5	AY.34	0.000485
ORF1ab/nsp1	84	V84A	gTt	gCt	5	5	AY.4	0.000008
ORF1ab/nsp1	84	V84del	GTT	---	5	5	AY.4.3	0.004209
ORF1ab/nsp1	84	V84V	gtT	gtG	5	5	AY.70	0.001043
ORF1ab/nsp1	84	V84del	GTT	---	5	5	AY.81	0.00996
ORF1ab/nsp1	84	V84del	GTT	---	5	5	AY.86	0.004149
ORF1ab/nsp1	84	V84V	gtT	gtG	5	5	AY.87	0.004163
ORF1ab/nsp1	84	V84V	gtT	gtG	4	5	AY.9.1	0.000335
ORF1ab/nsp1	84	V84V	gtT	gtC	1	5	AY.9.1	0.000084
ORF1ab/nsp1	84	V84del1	GtT	-tN	2	5	B.1	0.000018
ORF1ab/nsp1	84	V84del1	gTt	g-t	1	5	B.1	0.000009
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	5	B.1	0.000009
ORF1ab/nsp1	84	V84del1	GTt	-Nt	1	5	B.1	0.000009
ORF1ab/nsp1	84	V84del	GTT	---	5	5	B.1.1.176	0.002197
ORF1ab/nsp1	84	V84del	GTT	---	5	5	B.1.1.198	0.007342
ORF1ab/nsp1	84	V84del	GTT	---	5	5	B.1.1.311	0.001791
ORF1ab/nsp1	84	V84del	GTT	---	5	5	B.1.1.33	0.002104
ORF1ab/nsp1	84	V84del	GTT	---	5	5	B.1.177.4	0.001055
ORF1ab/nsp1	84	V84del	GTT	---	5	5	B.1.177.57	0.001405
ORF1ab/nsp1	84	V84del	GTT	---	5	5	B.1.177.6	0.004883
ORF1ab/nsp1	84	V84del	GTT	---	5	5	B.1.177.7	0.000824
ORF1ab/nsp1	84	V84del1	GtT	-tN	3	5	B.1.2	0.000026
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	5	B.1.2	0.000009
ORF1ab/nsp1	84	V84del1	gtT	gt-	1	5	B.1.2	0.000009
ORF1ab/nsp1	84	V84V	gtT	gtG	5	5	B.1.240	0.001078
ORF1ab/nsp1	84	V84del	GTT	---	5	5	B.1.356	0.008636
ORF1ab/nsp1	84	V84del	GTT	---	5	5	B.1.36.25	0.011038
ORF1ab/nsp1	84	V84del	GTT	---	5	5	B.1.361	0.006443
ORF1ab/nsp1	84	V84del	GTT	---	5	5	B.1.602	0.03268
ORF1ab/nsp1	84	V84del	GTT	---	5	5	B.1.627	0.010101
ORF1ab/nsp1	84	V84del	GTT	---	5	5	B.29	0.017544
ORF1ab/nsp1	84	V84del	GTT	---	5	5	P.3	0.007974
ORF1ab/nsp1	84	V84del1	GtT	-tN	3	4	AY.1	0.001187
ORF1ab/nsp1	84	V84del1	Gtt	-tt	1	4	AY.1	0.000396
ORF1ab/nsp1	84	V84V	gtT	gtG	4	4	AY.111	0.000733
ORF1ab/nsp1	84	V84del1	GtT	-tN	3	4	AY.114	0.000693
ORF1ab/nsp1	84	V84del1	Gtt	-tt	1	4	AY.114	0.000231
ORF1ab/nsp1	84	V84I	Gtt	Att	4	4	AY.117	0.000338
ORF1ab/nsp1	84	V84del	GTT	---	4	4	AY.15	0.008889
ORF1ab/nsp1	84	V84V	gtT	gtG	4	4	AY.2	0.001425
ORF1ab/nsp1	84	V84A	gTt	gCt	4	4	AY.25	0.000024
ORF1ab/nsp1	84	V84del2	gTT	g--	4	4	AY.3	0.00004
ORF1ab/nsp1	84	V84V	gtT	gtG	4	4	AY.3.1	0.000341
ORF1ab/nsp1	84	V84del	GTT	---	4	4	AY.30	0.001583
ORF1ab/nsp1	84	V84V	gtT	gtC	3	4	AY.34.1	0.00153
ORF1ab/nsp1	84	V84V	gtT	gtG	1	4	AY.34.1	0.00051
ORF1ab/nsp1	84	V84V	gtT	gtG	4	4	AY.35	0.000932
ORF1ab/nsp1	84	V84del1	gtT	gt-	3	4	AY.43	0.000013
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	4	AY.43	0.000004
ORF1ab/nsp1	84	V84del2	gTT	g--	4	4	AY.44	0.000024
ORF1ab/nsp1	84	V84V	gtT	gtG	4	4	AY.46.4	0.000658
ORF1ab/nsp1	84	V84del	GTT	---	4	4	AY.49	0.01278
ORF1ab/nsp1	84	V84del1	GTT	-NN	2	4	AY.5	0.000041
ORF1ab/nsp1	84	V84del1	gTT	g-N	1	4	AY.5	0.000021
ORF1ab/nsp1	84	V84del1	Gtt	-tt	1	4	AY.5	0.000021
ORF1ab/nsp1	84	V84del	GTT	---	4	4	AY.57	0.002625
ORF1ab/nsp1	84	V84del1	GTT	-NN	2	4	AY.64	0.00119
ORF1ab/nsp1	84	V84del1	GtT	-tN	2	4	AY.64	0.00119
ORF1ab/nsp1	84	V84del	GTT	---	4	4	AY.67	0.001857
ORF1ab/nsp1	84	V84V	gtT	gtG	4	4	AY.74	0.000463
ORF1ab/nsp1	84	V84V	gtT	gtG	4	4	B	0.000511
ORF1ab/nsp1	84	V84F	Gtt	Ttt	4	4	B.1	0.000037
ORF1ab/nsp1	84	V84I	Gtt	Att	4	4	B.1.1	0.000073
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.1.138	0.024242
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.1.218	0.030769
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.1.288	0.007663
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.1.294	0.005063
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.1.306	0.001754
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.1.307	0.010127
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.1.316	0.0037
ORF1ab/nsp1	84	V84V	gtT	gtG	4	4	B.1.1.39	0.002039
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.1.486	0.006309
ORF1ab/nsp1	84	V84del2	gTT	g--	3	4	B.1.1.7	0.000003
ORF1ab/nsp1	84	V84del2	GTt	--t	1	4	B.1.1.7	0.000001
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.108	0.023256
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.110.3	0.002874
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.160.11	0.022857
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.160.8	0.005155
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.177.12	0.000607
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.177.42	0.003578
ORF1ab/nsp1	84	V84I	Gtt	Att	4	4	B.1.177.60	0.000874
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.177.87	0.002911
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.199	0.016529
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.206	0.003263
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.214.4	0.036364
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.375	0.003279
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.396	0.002823
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.404	0.005208
ORF1ab/nsp1	84	V84V	gtT	gtC	4	4	B.1.561	0.001588
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.1.565	0.003241
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.23	0.011696
ORF1ab/nsp1	84	V84del	GTT	---	4	4	B.3	0.003322
ORF1ab/nsp1	84	V84V	gtT	gtG	3	4	Q.1	0.000379
ORF1ab/nsp1	84	V84V	gtT	gtC	1	4	Q.1	0.000126
ORF1ab/nsp1	84	V84del	GTT	---	4	4	Q.7	0.004444
ORF1ab/nsp1	84	V84del	GTT	---	3	3	A.23.1	0.002113
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	A.23.1	0.002113
ORF1ab/nsp1	84	V84H	GTt	CAt	3	3	All	0.000001
ORF1ab/nsp1	84	V84L	GtT	CtG	1	3	All	0
ORF1ab/nsp1	84	V84L	GtT	TtA	1	3	All	0
ORF1ab/nsp1	84	V84L	Gtt	Ctt	1	3	All	0
ORF1ab/nsp1	84	V84del	GTT	---	3	3	AU.3	0.006329
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	AY.101	0.001471
ORF1ab/nsp1	84	V84del2	gTT	g--	2	3	AY.103	0.000012
ORF1ab/nsp1	84	V84del2	GTT	--N	1	3	AY.103	0.000006
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	AY.114	0.000693
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	AY.16.1	0.00141
ORF1ab/nsp1	84	V84del	GTT	---	3	3	AY.23.1	0.001252
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	AY.32	0.001597
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	3	AY.35	0.000233
ORF1ab/nsp1	84	V84del1	gtT	gt-	1	3	AY.35	0.000233
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	3	AY.35	0.000233
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	AY.36	0.000445
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	3	AY.36	0.000148
ORF1ab/nsp1	84	V84del1	gTT	g-N	1	3	AY.36	0.000148
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	3	AY.36	0.000148
ORF1ab/nsp1	84	V84del	GTT	---	3	3	AY.39.2	0.004622
ORF1ab/nsp1	84	V84F	Gtt	Ttt	3	3	AY.4	0.000005
ORF1ab/nsp1	84	V84F	Gtt	Ttt	3	3	AY.43	0.000013
ORF1ab/nsp1	84	V84V	gtT	gtC	2	3	AY.5.4	0.000553
ORF1ab/nsp1	84	V84V	gtT	gtG	1	3	AY.5.4	0.000277
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	AY.54	0.000286
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	AY.59	0.001589
ORF1ab/nsp1	84	V84del	GTT	---	3	3	AY.63	0.001161
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	AY.73	0.001996
ORF1ab/nsp1	84	V84del	GTT	---	3	3	AY.85	0.001282
ORF1ab/nsp1	84	V84del	GTT	---	3	3	AY.89	0.014706
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	3	AY.9	0.000068
ORF1ab/nsp1	84	V84del1	GTt	-Nt	1	3	AY.9	0.000068
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	3	AY.9	0.000068
ORF1ab/nsp1	84	V84I	Gtt	Att	3	3	AY.9.2	0.00011
ORF1ab/nsp1	84	V84V	gtT	gtG	2	3	AY.91	0.001461
ORF1ab/nsp1	84	V84V	gtT	gtC	1	3	AY.91	0.00073
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	AY.99	0.003148
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	AY.99.1	0.004658
ORF1ab/nsp1	84	V84del	GTT	---	3	3	AZ.2	0.002463
ORF1ab/nsp1	84	V84A	gTt	gCt	3	3	B.1	0.000027
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	B.1.1.129	0.027523
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.1.189	0.004539
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.1.216	0.002671
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.1.25	0.001706
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.1.277	0.002276
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.1.303	0.008287
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	B.1.1.318	0.000905
ORF1ab/nsp1	84	V84V	gtT	gtC	2	3	B.1.1.50	0.001358
ORF1ab/nsp1	84	V84V	gtT	gtG	1	3	B.1.1.50	0.000679
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.1.517	0.020408
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.1.528	0.014423
ORF1ab/nsp1	84	V84V	gtT	gtC	2	3	B.1.1.63	0.000772
ORF1ab/nsp1	84	V84V	gtT	gtG	1	3	B.1.1.63	0.000386
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.110	0.013575
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.126	0.003827
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.139	0.002199
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	B.1.160	0.000094
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.160.7	0.006237
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.190	0.03
ORF1ab/nsp1	84	V84del1	GtT	-tN	2	3	B.1.243	0.000139
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	3	B.1.243	0.00007
ORF1ab/nsp1	84	V84V	gtT	gtG	2	3	B.1.351	0.000059
ORF1ab/nsp1	84	V84V	gtT	gtA	1	3	B.1.351	0.00003
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	B.1.351.2	0.000908
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.351.3	0.002629
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.36.17	0.001482
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.366	0.014634
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.369	0.000856
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.397	0.014563
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.422	0.002437
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.424	0.024194
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	B.1.425	0.008982
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.428	0.003061
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.429.1	0.036145
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.564	0.001278
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.577	0.002062
ORF1ab/nsp1	84	V84F	Gtt	Ttt	3	3	B.1.617.2	0.000011
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.618	0.012097
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	B.1.620	0.002838
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.1.8	0.005917
ORF1ab/nsp1	84	V84del	GTT	---	3	3	B.4	0.006623
ORF1ab/nsp1	84	V84A	gTt	gCt	3	3	C.26	0.022059
ORF1ab/nsp1	84	V84del	GTT	---	3	3	C.30.1	0.020134
ORF1ab/nsp1	84	V84V	gtT	gtG	3	3	C.36.3	0.001702
ORF1ab/nsp1	84	V84del	GTT	---	3	3	N.4	0.012766
ORF1ab/nsp1	84	V84del	GTT	---	2	2	A.21	0.00554
ORF1ab/nsp1	84	V84del	GTT	---	2	2	AE.8	0.000978
ORF1ab/nsp1	84	V84del1	Gtt	-tt	1	2	AY.100	0.000046
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	2	AY.100	0.000046
ORF1ab/nsp1	84	V84A	gTt	gCt	2	2	AY.102	0.000053
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	2	AY.102	0.000027
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	2	AY.102	0.000027
ORF1ab/nsp1	84	V84del	GTT	---	2	2	AY.104	0.003968
ORF1ab/nsp1	84	V84del1	GTT	-NN	2	2	AY.110	0.000225
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	AY.110	0.000225
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	AY.116.1	0.000623
ORF1ab/nsp1	84	V84del1	GTT	-NN	2	2	AY.119	0.000071
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	AY.120.1	0.000642
ORF1ab/nsp1	84	V84del	GTT	---	2	2	AY.21	0.003795
ORF1ab/nsp1	84	V84A	gTt	gCt	2	2	AY.24	0.000862
ORF1ab/nsp1	84	V84I	Gtt	Att	2	2	AY.25	0.000012
ORF1ab/nsp1	84	V84del2	gTT	g--	2	2	AY.25	0.000012
ORF1ab/nsp1	84	V84del	GTT	---	2	2	AY.28	0.003781
ORF1ab/nsp1	84	V84F	Gtt	Ttt	2	2	AY.3	0.00002
ORF1ab/nsp1	84	V84del2	gTT	g--	2	2	AY.34	0.000194
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	AY.37	0.000632
ORF1ab/nsp1	84	V84G	gTt	gGt	2	2	AY.39	0.000049
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	2	AY.39.1	0.00004
ORF1ab/nsp1	84	V84del1	gtT	gt-	1	2	AY.39.1	0.00004
ORF1ab/nsp1	84	V84del1	gTT	g-N	1	2	AY.4.2	0.000022
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	2	AY.4.2	0.000022
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	AY.4.4	0.000818
ORF1ab/nsp1	84	V84del2	gTT	g--	2	2	AY.43	0.000009
ORF1ab/nsp1	84	V84A	gTt	gCt	2	2	AY.44	0.000012
ORF1ab/nsp1	84	V84G	gTt	gGt	2	2	AY.44	0.000012
ORF1ab/nsp1	84	V84I	Gtt	Att	2	2	AY.45	0.000243
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	2	AY.46.6	0.000072
ORF1ab/nsp1	84	V84del1	gtT	gt-	1	2	AY.46.6	0.000072
ORF1ab/nsp1	84	V84del2	gTT	g--	2	2	AY.5	0.000041
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	AY.53	0.000575
ORF1ab/nsp1	84	V84F	Gtt	Ttt	2	2	AY.54	0.000191
ORF1ab/nsp1	84	V84del	GTT	---	2	2	AY.56	0.00321
ORF1ab/nsp1	84	V84F	Gtt	Ttt	2	2	AY.58	0.001815
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	AY.68	0.000547
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	2	AY.69	0.000187
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	2	AY.69	0.000187
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	AY.7.2	0.001119
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	2	AY.74	0.000116
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	2	AY.74	0.000116
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	AY.8	0.001212
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	AY.80	0.002257
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	AY.88	0.001768
ORF1ab/nsp1	84	V84del	GTT	---	2	2	AY.91.1	0.00813
ORF1ab/nsp1	84	V84V	gtT	gtC	1	2	AY.92	0.000287
ORF1ab/nsp1	84	V84V	gtT	gtG	1	2	AY.92	0.000287
ORF1ab/nsp1	84	V84del	GTT	---	2	2	AY.99.1	0.003106
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	AY.99.2	0.000184
ORF1ab/nsp1	84	V84del	GTT	---	2	2	AZ.1	0.001735
ORF1ab/nsp1	84	V84del	GTT	---	2	2	AZ.2.1	0.01626
ORF1ab/nsp1	84	V84del	GTT	---	2	2	AZ.4	0.006711
ORF1ab/nsp1	84	V84I	Gtt	Att	2	2	B.1	0.000018
ORF1ab/nsp1	84	V84D	gTt	gAt	2	2	B.1	0.000018
ORF1ab/nsp1	84	V84A	gTt	gCt	2	2	B.1.1.1	0.000653
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.10	0.00223
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.101	0.02
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.132	0.029851
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	2	B.1.1.15	0.013514
ORF1ab/nsp1	84	V84F	GtT	TtC	1	2	B.1.1.15	0.013514
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.169	0.036364
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.192	0.004619
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.224	0.028571
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.228	0.006098
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.240	0.00939
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.253	0.005013
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.269	0.002706
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	B.1.1.284	0.000215
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.297	0.004474
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.349	0.020619
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.377	0.002762
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.409	0.005666
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.411	0.029412
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.428	0.018868
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.433	0.002849
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.448	0.004065
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.46	0.008734
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.464	0.002946
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.47	0.010695
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.74	0.008621
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.8	0.007168
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.1.83	0.00542
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.104	0.00738
ORF1ab/nsp1	84	V84del1	gtT	gt-	2	2	B.1.147	0.001512
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.151	0.022222
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.160.18	0.014599
ORF1ab/nsp1	84	V84del2	gTT	g--	2	2	B.1.177	0.000026
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.177.10	0.001756
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.177.15	0.001262
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.177.18	0.00232
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.177.35	0.001382
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.177.5	0.002484
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.177.60	0.000437
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.177.70	0.011834
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	B.1.177.72	0.00678
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.177.73	0.001133
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.177.89	0.04878
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.179	0.007519
ORF1ab/nsp1	84	V84A	gTt	gCt	2	2	B.1.2	0.000018
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.221.2	0.008032
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.221.3	0.001667
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.222	0.003384
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.258.14	0.001961
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.258.2	0.009009
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.258.7	0.003824
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.265	0.002541
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.292	0.117647
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.324	0.00321
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.329	0.001215
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.336	0.004878
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.344	0.016393
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	B.1.36	0.000292
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.36.21	0.00432
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.36.7	0.008
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.36.8	0.002
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	B.1.400	0.000858
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.425	0.005988
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.426	0.002018
ORF1ab/nsp1	84	V84V	gtT	gtC	1	2	B.1.427	0.00005
ORF1ab/nsp1	84	V84V	gtT	gtG	1	2	B.1.427	0.00005
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.471	0.005464
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.474	0.003802
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.480	0.004975
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.499	0.002101
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	B.1.509	0.001732
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.523	0.004902
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.568	0.002222
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.576	0.001813
ORF1ab/nsp1	84	V84del1	GtT	-tN	2	2	B.1.596	0.000174
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.599	0.007299
ORF1ab/nsp1	84	V84G	gTt	gGt	2	2	B.1.617.2	0.000008
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.619.1	0.001283
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.620	0.001892
ORF1ab/nsp1	84	V84I	Gtt	Att	2	2	B.1.621	0.000177
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	2	B.1.621	0.000089
ORF1ab/nsp1	84	V84del1	gtT	gt-	1	2	B.1.621	0.000089
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.622	0.025974
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.625	0.004706
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	B.1.637	0.000146
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.1.639	0.043478
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	B.3	0.001661
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.30	0.029412
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.39	0.004662
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.4.4	0.037736
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.5	0.076923
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.55	0.0059
ORF1ab/nsp1	84	V84del	GTT	---	2	2	B.6	0.00182
ORF1ab/nsp1	84	V84del	GTT	---	2	2	C.16	0.002121
ORF1ab/nsp1	84	V84del	GTT	---	2	2	C.31	0.035714
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	C.37	0.000232
ORF1ab/nsp1	84	V84del	GTT	---	2	2	C.38	0.016129
ORF1ab/nsp1	84	V84del	GTT	---	2	2	N.6	0.014184
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	P.1.16	0.000748
ORF1ab/nsp1	84	V84del	GTT	---	2	2	P.1.2	0.002312
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	P.1.4	0.001953
ORF1ab/nsp1	84	V84del	GTT	---	2	2	P.1.6	0.003891
ORF1ab/nsp1	84	V84F	Gtt	Ttt	2	2	P.2	0.000373
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	P.3	0.00319
ORF1ab/nsp1	84	V84del	GTT	---	2	2	Q.2	0.001227
ORF1ab/nsp1	84	V84V	gtT	gtG	2	2	Q.2	0.001227
ORF1ab/nsp1	84	V84V	gtT	gtG	1	2	Q.8	0.000165
ORF1ab/nsp1	84	V84V	gtT	gtC	1	2	Q.8	0.000165
ORF1ab/nsp1	84	V84del	GTT	---	2	2	W.4	0.002703
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	A	0.000387
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	A.1	0.000282
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	A.2	0.000662
ORF1ab/nsp1	84	V84del	GTT	---	1	1	A.2.3	0.004739
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	A.2.3	0.004739
ORF1ab/nsp1	84	V84del	GTT	---	1	1	A.2.5.1	0.004808
ORF1ab/nsp1	84	V84del	GTT	---	1	1	A.23	0.010526
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	A.27	0.001656
ORF1ab/nsp1	84	V84del	GTT	---	1	1	A.5	0.001923
ORF1ab/nsp1	84	V84del	GTT	---	1	1	AA.2	0.007692
ORF1ab/nsp1	84	V84del	GTT	---	1	1	AB.1	0.008197
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AD.2	0.000219
ORF1ab/nsp1	84	V84del	GTT	---	1	1	AE.1	0.011364
ORF1ab/nsp1	84	V84S	GTT	TCA	1	1	All	0
ORF1ab/nsp1	84	V84N	GTt	AAt	1	1	All	0
ORF1ab/nsp1	84	V84R	GTT	CGC	1	1	All	0
ORF1ab/nsp1	84	V84Q	GTT	CAG	1	1	All	0
ORF1ab/nsp1	84	V84del	GTT	---	1	1	AP.1	0.001502
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AU.1	0.001266
ORF1ab/nsp1	84	V84del	GTT	---	1	1	AW.1	0.003049
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AY.10	0.00053
ORF1ab/nsp1	84	V84del2	gTT	g--	1	1	AY.100	0.000046
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.102	0.000027
ORF1ab/nsp1	84	V84del2	gTT	g--	1	1	AY.102	0.000027
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.104	0.001984
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	AY.106	0.000335
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	1	AY.107	0.000466
ORF1ab/nsp1	84	V84del	GTT	---	1	1	AY.108	0.001103
ORF1ab/nsp1	84	V84G	gTt	gGt	1	1	AY.111	0.000183
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	1	AY.113	0.000142
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.116	0.000287
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AY.116	0.000287
ORF1ab/nsp1	84	V84A	gTt	gCt	1	1	AY.116.1	0.000311
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	AY.118	0.000063
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.118	0.000063
ORF1ab/nsp1	84	V84A	gTt	gCt	1	1	AY.119	0.000035
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	1	AY.120	0.000037
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.120	0.000037
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AY.120.2.1	0.000498
ORF1ab/nsp1	84	V84del2	gTT	g--	1	1	AY.14	0.000088
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	1	AY.23	0.00007
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	AY.23	0.00007
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.23	0.00007
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.23.1	0.000417
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	1	AY.24	0.000431
ORF1ab/nsp1	84	V84H	GTt	CAt	1	1	AY.26	0.000028
ORF1ab/nsp1	84	V84del2	gTT	g--	1	1	AY.26	0.000028
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.27	0.000065
ORF1ab/nsp1	84	V84G	gTt	gGt	1	1	AY.29	0.000016
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.29	0.000016
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AY.29.1	0.000221
ORF1ab/nsp1	84	V84E	gTT	gAA	1	1	AY.3.1	0.000085
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	1	AY.33	0.000067
ORF1ab/nsp1	84	V84A	gTt	gCt	1	1	AY.34	0.000097
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	1	AY.34	0.000097
ORF1ab/nsp1	84	V84E	gTT	gAG	1	1	AY.34	0.000097
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.34.1	0.00051
ORF1ab/nsp1	84	V84G	gTt	gGt	1	1	AY.35	0.000233
ORF1ab/nsp1	84	V84A	gTt	gCt	1	1	AY.36	0.000148
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AY.38	0.000499
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.39	0.000025
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AY.39.1.1	0.000725
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AY.4.2.1	0.000149
ORF1ab/nsp1	84	V84del2	gTT	g--	1	1	AY.4.2.1	0.000149
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.42	0.00004
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	1	AY.42	0.00004
ORF1ab/nsp1	84	V84G	gTt	gGt	1	1	AY.43	0.000004
ORF1ab/nsp1	84	V84H	GTt	CAt	1	1	AY.44	0.000006
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	AY.44	0.000006
ORF1ab/nsp1	84	V84E	gTT	gAA	1	1	AY.44	0.000006
ORF1ab/nsp1	84	V84L	GtT	TtA	1	1	AY.44	0.000006
ORF1ab/nsp1	84	V84S	GTT	TCA	1	1	AY.44	0.000006
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	1	AY.45	0.000122
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	AY.46	0.000104
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.47	0.000031
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AY.48	0.000465
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	AY.5	0.000021
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	1	AY.5.3	0.000337
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AY.50	0.000799
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	1	AY.52	0.000814
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	1	AY.54	0.000095
ORF1ab/nsp1	84	V84del2	gTT	g--	1	1	AY.54	0.000095
ORF1ab/nsp1	84	V84del2	gTT	g--	1	1	AY.6	0.000041
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.61	0.000105
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AY.64	0.000595
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AY.65	0.000533
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.7	0.000196
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.7.2	0.000559
ORF1ab/nsp1	84	V84D	gTt	gAt	1	1	AY.70	0.000209
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.72	0.001361
ORF1ab/nsp1	84	V84del2	gTT	g--	1	1	AY.74	0.000116
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.75	0.000056
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AY.75.1	0.00018
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	1	AY.75.1	0.00018
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	1	AY.8	0.000606
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AY.84	0.000437
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AY.89	0.004902
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	AY.9.2	0.000037
ORF1ab/nsp1	84	V84del	GTT	---	1	1	AY.9.2.1	0.001976
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.91	0.00073
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AY.96	0.002075
ORF1ab/nsp1	84	V84del	GTT	---	1	1	AY.96	0.002075
ORF1ab/nsp1	84	V84del	GTT	---	1	1	AY.97	0.001701
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.98	0.000079
ORF1ab/nsp1	84	V84del1	GTT	-NN	1	1	AY.98	0.000079
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	AY.98.1	0.000048
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	AY.98.1	0.000048
ORF1ab/nsp1	84	V84A	gTt	gCt	1	1	AY.99.2	0.000092
ORF1ab/nsp1	84	V84del1	Gtt	-tt	1	1	AY.99.2	0.000092
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	AZ.5	0.003509
ORF1ab/nsp1	84	V84A	gTt	gCt	1	1	B	0.000128
ORF1ab/nsp1	84	V84G	gTt	gGt	1	1	B.1	0.000009
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	B.1.1	0.000018
ORF1ab/nsp1	84	V84G	gTt	gGt	1	1	B.1.1	0.000018
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	1	B.1.1	0.000018
ORF1ab/nsp1	84	V84R	GTT	CGC	1	1	B.1.1	0.000018
ORF1ab/nsp1	84	V84del2	gTT	g--	1	1	B.1.1.101	0.01
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.13	0.035714
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.134	0.011364
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.1.135	0.004695
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.139	0.022727
ORF1ab/nsp1	84	V84V	gtT	gtC	1	1	B.1.1.15	0.013514
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.153	0.001095
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.159	0.004673
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.1.161	0.003534
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.1.170	0.001247
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.171	0.003676
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.174	0.003378
ORF1ab/nsp1	84	V84del1	gtT	gt-	1	1	B.1.1.176	0.000439
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.204	0.00304
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	B.1.1.216	0.00089
ORF1ab/nsp1	84	V84L	GtT	CtG	1	1	B.1.1.220	0.001859
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.1.222	0.000204
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.1.231	0.003096
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.234	0.012048
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.243	0.004082
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.251	0.007937
ORF1ab/nsp1	84	V84G	gTt	gGt	1	1	B.1.1.257	0.009709
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.262	0.015152
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.263	0.001558
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.265	0.003155
ORF1ab/nsp1	84	V84del1	gtT	gt-	1	1	B.1.1.28	0.000311
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.280	0.003086
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.289	0.002083
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.291	0.000742
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.315	0.008475
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.1.316	0.000925
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	B.1.1.316	0.000925
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.326	0.001761
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.328	0.016949
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.1.33	0.000421
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.1.334	0.016393
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.338	0.017241
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.351	0.002793
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.360	0.03125
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.372	0.000689
ORF1ab/nsp1	84	V84V	gtT	gtC	1	1	B.1.1.376	0.005952
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.38	0.058824
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.380	0.009804
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.382	0.035714
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.1.384	0.02381
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.1.385	0.004464
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	B.1.1.39	0.00051
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.397	0.002252
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.398	0.003226
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.4	0.002976
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.406	0.006494
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.1.409	0.002833
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.41	0.006329
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.413	0.006897
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	B.1.1.416	0.000905
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.421	0.030303
ORF1ab/nsp1	84	V84del1	gTt	g-t	1	1	B.1.1.440	0.011765
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.458	0.041667
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.463	0.0625
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.485	0.016667
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.487	0.005587
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.5	0.008333
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.507	0.008696
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.518	0.006329
ORF1ab/nsp1	84	V84G	gTt	gGt	1	1	B.1.1.519	0.00004
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.1.52	0.012195
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.52	0.012195
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.525	0.005464
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.57	0.011494
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.63	0.000386
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.1.67	0.004566
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.67	0.004566
ORF1ab/nsp1	84	V84G	gTt	gGt	1	1	B.1.1.7	0.000001
ORF1ab/nsp1	84	V84D	gTt	gAt	1	1	B.1.1.7	0.000001
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.71	0.006061
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.1.89	0.006061
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.112	0.005181
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.127	0.002198
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.142	0.002899
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.147	0.000756
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.157	0.002985
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.160.10	0.008065
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.160.14	0.002119
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.160.16	0.000929
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.160.17	0.001701
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.160.19	0.035714
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.160.21	0.020408
ORF1ab/nsp1	84	V84V	gtT	gtA	1	1	B.1.160.22	0.006757
ORF1ab/nsp1	84	V84V	gtT	gtC	1	1	B.1.160.23	0.004831
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.160.24	0.004425
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.160.28	0.002924
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.161	0.017241
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.168	0.027027
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.177.11	0.001698
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.177.16	0.000664
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.177.19	0.001431
ORF1ab/nsp1	84	V84V	gtT	gtC	1	1	B.1.177.23	0.003236
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.177.23	0.003236
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.177.31	0.011494
ORF1ab/nsp1	84	V84V	gtT	gtC	1	1	B.1.177.32	0.00135
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.177.38	0.010417
ORF1ab/nsp1	84	V84G	gTt	gGt	1	1	B.1.177.44	0.000519
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.177.45	0.000381
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.177.46	0.000918
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.177.53	0.002392
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	B.1.177.56	0.000668
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.177.58	0.001332
ORF1ab/nsp1	84	V84V	gtT	gtC	1	1	B.1.177.6	0.000977
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.177.65	0.000665
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.177.7	0.000165
ORF1ab/nsp1	84	V84V	gtT	gtC	1	1	B.1.177.73	0.000566
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.177.76	0.002494
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.177.79	0.002342
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.177.8	0.000752
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.177.81	0.000189
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.177.82	0.000477
ORF1ab/nsp1	84	V84del2	gTT	g--	1	1	B.1.177.82	0.000477
ORF1ab/nsp1	84	V84del1	gtT	gt-	1	1	B.1.177.83	0.001481
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.177.83	0.001481
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.189	0.004292
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.199	0.004132
ORF1ab/nsp1	84	V84del2	gTT	g--	1	1	B.1.2	0.000009
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.203	0.0625
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.211	0.025
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.213	0.014925
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.214.2	0.0006
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.22	0.001318
ORF1ab/nsp1	84	V84G	gTt	gGt	1	1	B.1.221	0.000071
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.221.1	0.002907
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.221.4	0.004167
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.223	0.002778
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.250	0.014493
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.252	0.006623
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.254	0.025
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.256	0.017241
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	1	B.1.258	0.000067
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.258.24	0.010753
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.258.3	0.001675
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.258.9	0.005
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.274	0.011905
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.277	0.02381
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.284	0.013158
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.287	0.030303
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.289	0.00266
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.298	0.002114
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.305	0.002151
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.306	0.005714
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.311	0.000275
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	B.1.311	0.000275
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.313	0.006579
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.314	0.007519
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.324	0.001605
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.326	0.007576
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.329	0.000608
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.340	0.004292
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.346	0.001311
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.35	0.008475
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.35	0.008475
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.350	0.002933
ORF1ab/nsp1	84	V84A	gTt	gCt	1	1	B.1.351	0.00003
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.36.1	0.00114
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.36.16	0.001425
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.36.21	0.00216
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.36.22	0.001208
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	B.1.36.24	0.006173
ORF1ab/nsp1	84	V84V	gtT	gtC	1	1	B.1.36.29	0.000517
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.36.31	0.001751
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.36.35	0.002604
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.36.36	0.000602
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.36.38	0.001642
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	B.1.36.8	0.001
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.36.8	0.001
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.367	0.000792
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.377	0.004566
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.378	0.006849
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.390	0.010638
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.391	0.001127
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.396	0.000706
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	B.1.396	0.000706
ORF1ab/nsp1	84	V84G	gTt	gGt	1	1	B.1.398	0.002976
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.399	0.001934
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.402	0.009804
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.403	0.003268
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.411	0.003704
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.416	0.001269
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.421	0.007463
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.423	0.010204
ORF1ab/nsp1	84	V84G	gTt	gGt	1	1	B.1.427	0.00005
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	B.1.429	0.000024
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.433	0.003195
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.436	0.001029
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.450	0.011364
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	B.1.453	0.003236
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.456	0.003268
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.460	0.017857
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.465	0.003802
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.468	0.005714
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.469	0.00361
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.487	0.019608
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.491	0.052632
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.505	0.004386
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.506	0.02381
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.509	0.000866
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.521	0.004975
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.525	0.000113
ORF1ab/nsp1	84	V84del2	gTT	g--	1	1	B.1.526	0.000024
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	B.1.526	0.000024
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	B.1.526	0.000024
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.533	0.009615
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	B.1.537	0.02
ORF1ab/nsp1	84	V84G	gTt	gGt	1	1	B.1.538	0.008065
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.540	0.009709
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.541	0.004425
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.542	0.03125
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.543	0.01
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.545	0.014493
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.550	0.013699
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.554	0.004405
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.556	0.007519
ORF1ab/nsp1	84	V84A	gTT	gCC	1	1	B.1.560	0.00463
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.562	0.018519
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.571	0.009709
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.581	0.009434
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.582	0.000491
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.586	0.010989
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.587	0.001898
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.593	0.01087
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	B.1.595	0.000261
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.595.3	0.026316
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	B.1.596	0.000087
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.596.1	0.009346
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.597	0.00463
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.599	0.00365
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.600	0.005848
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.601	0.030303
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.605	0.005952
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.605	0.005952
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.606	0.006024
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.617.1	0.000129
ORF1ab/nsp1	84	V84L	Gtt	Ctt	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.617.3	0.002985
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.619	0.000871
ORF1ab/nsp1	84	V84A	gTT	gCA	1	1	B.1.621	0.000089
ORF1ab/nsp1	84	V84E	gTT	gAG	1	1	B.1.621	0.000089
ORF1ab/nsp1	84	V84H	GTt	CAt	1	1	B.1.621	0.000089
ORF1ab/nsp1	84	V84D	gTt	gAt	1	1	B.1.621	0.000089
ORF1ab/nsp1	84	V84Q	GTT	CAG	1	1	B.1.621	0.000089
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.621.1	0.000506
ORF1ab/nsp1	84	V84del1	GtT	-tN	1	1	B.1.621.1	0.000506
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.623	0.000536
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.626	0.005714
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.1.627	0.00202
ORF1ab/nsp1	84	V84del1	gtT	gt-	1	1	B.1.637	0.000073
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.84	0.020833
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.88.1	0.004808
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.1.94	0.027027
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.29	0.003509
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.3.1	0.001658
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.31	0.003731
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.35	0.007812
ORF1ab/nsp1	84	V84del	GTT	---	1	1	B.45	0.003831
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	B.49	0.05
ORF1ab/nsp1	84	V84D	gTt	gAt	1	1	B.53	0.011765
ORF1ab/nsp1	84	V84A	gTt	gCt	1	1	B.6.6	0.000889
ORF1ab/nsp1	84	V84del	GTT	---	1	1	C.1	0.002392
ORF1ab/nsp1	84	V84del	GTT	---	1	1	C.1.2	0.004255
ORF1ab/nsp1	84	V84del	GTT	---	1	1	C.2	0.016129
ORF1ab/nsp1	84	V84del	GTT	---	1	1	C.26	0.007353
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	C.30	0.001727
ORF1ab/nsp1	84	V84del	GTT	---	1	1	C.35	0.000774
ORF1ab/nsp1	84	V84A	gTt	gCt	1	1	C.35	0.000774
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	C.35	0.000774
ORF1ab/nsp1	84	V84del	GTT	---	1	1	C.36.1	0.004149
ORF1ab/nsp1	84	V84del	GTT	---	1	1	C.36.3.1	0.002717
ORF1ab/nsp1	84	V84del	GTT	---	1	1	C.37.1	0.002618
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	C.38	0.008065
ORF1ab/nsp1	84	V84del	GTT	---	1	1	C.8	0.004464
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	D.2	0.000075
ORF1ab/nsp1	84	V84del	GTT	---	1	1	D.5	0.004975
ORF1ab/nsp1	84	V84del	GTT	---	1	1	L.1	0.001905
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	L.3	0.003546
ORF1ab/nsp1	84	V84del	GTT	---	1	1	N.1	0.016949
ORF1ab/nsp1	84	V84del	GTT	---	1	1	N.10	0.029412
ORF1ab/nsp1	84	V84del	GTT	---	1	1	N.2	0.038462
ORF1ab/nsp1	84	V84E	gTT	gAG	1	1	N.3	0.005814
ORF1ab/nsp1	84	V84I	Gtt	Att	1	1	N.5	0.001767
ORF1ab/nsp1	84	V84del	GTT	---	1	1	N.5	0.001767
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	P.1	0.000016
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	P.1.10	0.000269
ORF1ab/nsp1	84	V84V	gtT	gtG	1	1	P.1.6	0.001946
ORF1ab/nsp1	84	V84del	GTT	---	1	1	P.5	0.013699
ORF1ab/nsp1	84	V84F	Gtt	Ttt	1	1	Q.1	0.000126
ORF1ab/nsp1	84	V84del	GTT	---	1	1	Q.4	0.000455
ORF1ab/nsp1	84	V84del	GTT	---	1	1	Q.6	0.006623
ORF1ab/nsp1	84	V84del2	GTT	--N	1	1	Q.7	0.001111
ORF1ab/nsp1	84	V84N	GTt	AAt	1	1	Q.8	0.000165
ORF1ab/nsp1	84	V84del	GTT	---	1	1	U.3	0.003861
ORF1ab/nsp1	84	V84del	GTT	---	1	1	W.2	0.004831

---

---