CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 72 | K72K | K72K | syn | aaA | aaG | 654 | 654 | 1 | 479-481 |
ORF1ab/nsp1 | 72 | K72del | K72del | del | AAA | --- | 100 | 100 | 1 | 479-481 |
ORF1ab/nsp1 | 72 | K72R | K72R | nonsyn | aAa | aGa | 62 | 61 | 0.983871 | 479-481 |
ORF1ab/nsp1 | 72 | K72R | K72R | nonsyn | aAA | aGG | 62 | 1 | 0.016129 | 479-481 |
ORF1ab/nsp1 | 72 | K72E | K72E | nonsyn | Aaa | Gaa | 34 | 33 | 0.970588 | 479-481 |
ORF1ab/nsp1 | 72 | K72E | K72E | nonsyn | AaA | GaG | 34 | 1 | 0.0294118 | 479-481 |
ORF1ab/nsp1 | 72 | K72N | K72N | nonsyn | aaA | aaC | 21 | 12 | 0.571429 | 479-481 |
ORF1ab/nsp1 | 72 | K72N | K72N | nonsyn | aaA | aaT | 21 | 9 | 0.428571 | 479-481 |
ORF1ab/nsp1 | 72 | K72Q | K72Q | nonsyn | Aaa | Caa | 13 | 13 | 1 | 479-481 |
ORF1ab/nsp1 | 72 | K72T | K72T | nonsyn | aAa | aCa | 9 | 9 | 1 | 479-481 |
ORF1ab/nsp1 | 72 | K72I | K72I | nonsyn | aAa | aTa | 6 | 5 | 0.833333 | 479-481 |
ORF1ab/nsp1 | 72 | K72I | K72I | nonsyn | aAA | aTC | 6 | 1 | 0.166667 | 479-481 |
ORF1ab/nsp1 | 72 | K72del1 | K72del1 | del | Aaa | -aa | 4 | 4 | 1 | 479-481 |
ORF1ab/nsp1 | 72 | K72X | K72X | nonsyn | Aaa | Taa | 2 | 2 | 1 | 479-481 |
ORF1ab/nsp1 | 72 | K72G | K72G | nonsyn | AAa | GGa | 2 | 1 | 0.5 | 479-481 |
ORF1ab/nsp1 | 72 | K72G | K72G | nonsyn | AAA | GGG | 2 | 1 | 0.5 | 479-481 |
ORF1ab/nsp1 | 72 | K72D | K72D | nonsyn | AaA | GaC | 1 | 1 | 1 | 479-481 |
ORF1ab/nsp1 | 72 | K72L | K72L | nonsyn | AAa | TTa | 1 | 1 | 1 | 479-481 |
ORF1ab/nsp1 | 72 | K72P | K72P | nonsyn | AAA | CCT | 1 | 1 | 1 | 479-481 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 654 | 654 | All | 0.000125 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 364 | 364 | A.28 | 0.962963 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 101 | 101 | B.1.1.7 | 0.00009 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 100 | 100 | All | 0.000019 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 61 | 62 | All | 0.000012 |
ORF1ab/nsp1 | 72 | K72R | aAA | aGG | 1 | 62 | All | 0 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 37 | 37 | B.1.214.1 | 0.74 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 33 | 34 | All | 0.000006 |
ORF1ab/nsp1 | 72 | K72E | AaA | GaG | 1 | 34 | All | 0 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 33 | 33 | B.1.617.2 | 0.000124 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 30 | 30 | B.1.1.7 | 0.000027 |
ORF1ab/nsp1 | 72 | K72N | aaA | aaC | 12 | 21 | All | 0.000002 |
ORF1ab/nsp1 | 72 | K72N | aaA | aaT | 9 | 21 | All | 0.000002 |
ORF1ab/nsp1 | 72 | K72Q | Aaa | Caa | 13 | 13 | All | 0.000002 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 13 | 13 | P.1.14 | 0.000621 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 11 | 11 | AY.9.1 | 0.000921 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 11 | 11 | B.1.177.57 | 0.003091 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp1 | 72 | K72T | aAa | aCa | 9 | 9 | All | 0.000002 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp1 | 72 | K72Q | Aaa | Caa | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 6 | 6 | A | 0.002322 |
ORF1ab/nsp1 | 72 | K72I | aAa | aTa | 5 | 6 | All | 0.000001 |
ORF1ab/nsp1 | 72 | K72I | aAA | aTC | 1 | 6 | All | 0 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 6 | 6 | B | 0.000767 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp1 | 72 | K72del1 | Aaa | -aa | 4 | 4 | All | 0.000001 |
ORF1ab/nsp1 | 72 | K72N | aaA | aaC | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp1 | 72 | K72N | aaA | aaC | 2 | 3 | AY.119 | 0.000071 |
ORF1ab/nsp1 | 72 | K72N | aaA | aaT | 1 | 3 | AY.119 | 0.000035 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp1 | 72 | K72R | aAA | aGG | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 3 | 3 | C.31 | 0.053571 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp1 | 72 | K72X | Aaa | Taa | 2 | 2 | All | 0 |
ORF1ab/nsp1 | 72 | K72G | AAA | GGG | 1 | 2 | All | 0 |
ORF1ab/nsp1 | 72 | K72G | AAa | GGa | 1 | 2 | All | 0 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp1 | 72 | K72N | aaA | aaC | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp1 | 72 | K72T | aAa | aCa | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp1 | 72 | K72N | aaA | aaC | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp1 | 72 | K72Q | Aaa | Caa | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp1 | 72 | K72N | aaA | aaT | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp1 | 72 | K72E | AaA | GaG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 72 | K72G | AAA | GGG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 72 | K72G | AAa | GGa | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 72 | K72Q | Aaa | Caa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 72 | K72N | aaA | aaC | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 72 | K72I | aAA | aTC | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 72 | K72N | aaA | aaT | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 72 | K72I | aAa | aTa | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp1 | 72 | K72P | AAA | CCT | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 72 | K72L | AAa | TTa | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 72 | K72D | AaA | GaC | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp1 | 72 | K72del1 | Aaa | -aa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 72 | K72Q | Aaa | Caa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 72 | K72I | aAa | aTa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 72 | K72N | aaA | aaT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 72 | K72D | AaA | GaC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 72 | K72Q | Aaa | Caa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 72 | K72del1 | Aaa | -aa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp1 | 72 | K72del1 | Aaa | -aa | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 72 | K72T | aAa | aCa | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 72 | K72T | aAa | aCa | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 72 | K72T | aAa | aCa | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 72 | K72del1 | Aaa | -aa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 72 | K72T | aAa | aCa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 72 | K72I | aAa | aTa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 72 | K72X | Aaa | Taa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 72 | K72N | aaA | aaT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 72 | K72L | AAa | TTa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 72 | K72I | aAa | aTa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp1 | 72 | K72T | aAa | aCa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 72 | K72N | aaA | aaT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 72 | K72T | aAa | aCa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 72 | K72I | aAa | aTa | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 1 | 1 | B.1.177.28 | 0.007407 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp1 | 72 | K72N | aaA | aaT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp1 | 72 | K72N | aaA | aaT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 72 | K72N | aaA | aaC | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp1 | 72 | K72X | Aaa | Taa | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp1 | 72 | K72E | Aaa | Gaa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 72 | K72P | AAA | CCT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 72 | K72T | aAa | aCa | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp1 | 72 | K72R | aAa | aGa | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp1 | 72 | K72K | aaA | aaG | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp1 | 72 | K72del | AAA | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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