CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 60 | V60V | V60V | syn | gtT | gtC | 174706 | 174629 | 0.999559 | 443-445 |
ORF1ab/nsp1 | 60 | V60V | V60V | syn | gtT | gtA | 174706 | 41 | 0.00023468 | 443-445 |
ORF1ab/nsp1 | 60 | V60V | V60V | syn | gtT | gtG | 174706 | 36 | 0.00020606 | 443-445 |
ORF1ab/nsp1 | 60 | V60I | V60I | nonsyn | Gtt | Att | 1952 | 1860 | 0.952869 | 443-445 |
ORF1ab/nsp1 | 60 | V60I | V60I | nonsyn | GtT | AtC | 1952 | 92 | 0.0471311 | 443-445 |
ORF1ab/nsp1 | 60 | V60A | V60A | nonsyn | gTt | gCt | 958 | 954 | 0.995825 | 443-445 |
ORF1ab/nsp1 | 60 | V60A | V60A | nonsyn | gTT | gCC | 958 | 3 | 0.00313152 | 443-445 |
ORF1ab/nsp1 | 60 | V60A | V60A | nonsyn | gTT | gCG | 958 | 1 | 0.00104384 | 443-445 |
ORF1ab/nsp1 | 60 | V60del | V60del | del | GTT | --- | 529 | 529 | 1 | 443-445 |
ORF1ab/nsp1 | 60 | V60F | V60F | nonsyn | Gtt | Ttt | 340 | 336 | 0.988235 | 443-445 |
ORF1ab/nsp1 | 60 | V60F | V60F | nonsyn | GtT | TtC | 340 | 4 | 0.0117647 | 443-445 |
ORF1ab/nsp1 | 60 | V60del1 | V60del1 | del | gTt | g-t | 146 | 142 | 0.972603 | 443-445 |
ORF1ab/nsp1 | 60 | V60del1 | V60del1 | del | gTT | g-N | 146 | 1 | 0.00684932 | 443-445 |
ORF1ab/nsp1 | 60 | V60del1 | V60del1 | del | Gtt | -tt | 146 | 1 | 0.00684932 | 443-445 |
ORF1ab/nsp1 | 60 | V60del1 | V60del1 | del | gtT | gt- | 146 | 1 | 0.00684932 | 443-445 |
ORF1ab/nsp1 | 60 | V60del1 | V60del1 | del | GTT | -NN | 146 | 1 | 0.00684932 | 443-445 |
ORF1ab/nsp1 | 60 | V60G | V60G | nonsyn | gTt | gGt | 41 | 39 | 0.951219 | 443-445 |
ORF1ab/nsp1 | 60 | V60G | V60G | nonsyn | gTT | gGG | 41 | 1 | 0.0243902 | 443-445 |
ORF1ab/nsp1 | 60 | V60G | V60G | nonsyn | gTT | gGC | 41 | 1 | 0.0243902 | 443-445 |
ORF1ab/nsp1 | 60 | V60L | V60L | nonsyn | Gtt | Ctt | 20 | 19 | 0.95 | 443-445 |
ORF1ab/nsp1 | 60 | V60L | V60L | nonsyn | GtT | CtA | 20 | 1 | 0.05 | 443-445 |
ORF1ab/nsp1 | 60 | V60del2 | V60del2 | del | gTT | g-- | 16 | 10 | 0.625 | 443-445 |
ORF1ab/nsp1 | 60 | V60del2 | V60del2 | del | GTt | --t | 16 | 3 | 0.1875 | 443-445 |
ORF1ab/nsp1 | 60 | V60del2 | V60del2 | del | GTT | --C | 16 | 2 | 0.125 | 443-445 |
ORF1ab/nsp1 | 60 | V60del2 | V60del2 | del | GTT | A-- | 16 | 1 | 0.0625 | 443-445 |
ORF1ab/nsp1 | 60 | V60T | V60T | nonsyn | GTt | ACt | 1 | 1 | 1 | 443-445 |
ORF1ab/nsp1 | 60 | V60D | V60D | nonsyn | gTt | gAt | 1 | 1 | 1 | 443-445 |
ORF1ab/nsp1 | 60 | V60R | V60R | nonsyn | GTt | CGt | 1 | 1 | 1 | 443-445 |
ORF1ab/nsp1 | 60 | V60S | V60S | nonsyn | GTt | TCt | 1 | 1 | 1 | 443-445 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 174629 | 174706 | All | 0.0334 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtA | 41 | 174706 | All | 0.000008 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtG | 36 | 174706 | All | 0.000007 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 74288 | 74289 | B.1.177 | 0.978194 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtA | 1 | 74289 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 12915 | 12915 | B.1.177.21 | 0.987612 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 6563 | 6563 | B.1.177.12 | 0.995601 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 5959 | 5959 | B.1.177.7 | 0.982361 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 5343 | 5343 | B.1.177.86 | 0.980187 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 5227 | 5227 | B.1.177.81 | 0.989587 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 4711 | 4711 | B.1.177.4 | 0.994301 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 4555 | 4555 | B.1.177.60 | 0.994976 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 3538 | 3538 | B.1.177.57 | 0.994099 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2607 | 2607 | B.1.177.45 | 0.9939 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2087 | 2087 | B.1.177.82 | 0.996181 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1860 | 1952 | All | 0.000356 |
ORF1ab/nsp1 | 60 | V60I | GtT | AtC | 92 | 1952 | All | 0.000018 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1842 | 1842 | B.1.177.44 | 0.95589 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1645 | 1645 | B.1.177.54 | 0.997574 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1583 | 1583 | B.1.177.15 | 0.998738 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1500 | 1500 | B.1.177.65 | 0.998004 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1496 | 1496 | B.1.177.16 | 0.99402 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1491 | 1491 | B.1.177.56 | 0.995327 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1439 | 1439 | B.1.177.35 | 0.994471 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1366 | 1366 | B.1.177.77 | 0.992012 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1363 | 1363 | B.1.177.87 | 0.991994 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1325 | 1325 | B.1.177.8 | 0.99699 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1224 | 1225 | B.1 | 0.011211 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtA | 1 | 1225 | B.1 | 0.000009 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1223 | 1223 | B.1.177.73 | 0.692525 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1216 | 1216 | B.1.177.17 | 0.998358 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1139 | 1139 | B.1.177.10 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1115 | 1115 | B.1.177.42 | 0.997317 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1085 | 1085 | B.1.177.46 | 0.996327 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 995 | 995 | B.1.177.6 | 0.97168 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 954 | 958 | All | 0.000182 |
ORF1ab/nsp1 | 60 | V60A | gTT | gCC | 3 | 958 | All | 0.000001 |
ORF1ab/nsp1 | 60 | V60A | gTT | gCG | 1 | 958 | All | 0 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 953 | 953 | B.1.177.75 | 0.991675 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 859 | 859 | B.1.177.18 | 0.99652 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 823 | 823 | B.1.177.62 | 0.98093 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 806 | 806 | AY.4 | 0.001254 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 805 | 805 | B.1.177.5 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 765 | 765 | B.1.177.24 | 0.990933 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 764 | 764 | B.1.221 | 0.054269 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 748 | 748 | B.1.177.58 | 0.996005 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 741 | 741 | B.1.177.9 | 0.986684 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 731 | 731 | W.4 | 0.987838 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 726 | 726 | B.1.177.32 | 0.979757 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 698 | 698 | B.1.177.19 | 0.998569 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 672 | 672 | B.1.177.69 | 0.997033 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 669 | 669 | B.1.177.83 | 0.991111 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 654 | 654 | B.1.177.20 | 0.992413 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 640 | 640 | B.1.177.43 | 0.945347 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 601 | 601 | B.1.177.33 | 0.988487 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 587 | 587 | B.1.177.11 | 0.996604 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 560 | 560 | B.1.177.52 | 0.984183 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 529 | 529 | All | 0.000101 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 523 | 523 | B.1.177.80 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 427 | 427 | B.1.177.55 | 0.995338 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 427 | 427 | B.1.177.79 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 417 | 417 | B.1.177.53 | 0.997608 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 415 | 415 | B.1.1.7 | 0.000372 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 398 | 398 | B.1.177.76 | 0.992519 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 394 | 394 | B.1.177.30 | 0.98995 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 390 | 390 | B.1.177.41 | 0.975 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 368 | 368 | B.1.177.63 | 0.994595 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 344 | 344 | Z.1 | 0.99422 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 342 | 342 | AY.43 | 0.001515 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 336 | 340 | All | 0.000064 |
ORF1ab/nsp1 | 60 | V60F | GtT | TtC | 4 | 340 | All | 0.000001 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 317 | 317 | B.1.177.48 | 0.990625 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 293 | 293 | B.1.177.23 | 0.94822 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 293 | 293 | B.1.177.72 | 0.99322 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 259 | 259 | U.3 | 1 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 237 | 237 | AY.4 | 0.000369 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 220 | 224 | B.1.1 | 0.003991 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtA | 3 | 224 | B.1.1 | 0.000054 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtG | 1 | 224 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 219 | 219 | B.1.177.2 | 0.995455 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 212 | 212 | B.1.177.51 | 0.968037 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 208 | 208 | B.1.177.50 | 0.976526 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 202 | 202 | W.2 | 0.975845 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 193 | 193 | B.1.177.40 | 0.994845 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 189 | 189 | W.3 | 0.994737 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 181 | 181 | B.1.177.85 | 0.983696 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 166 | 166 | B.1.177.70 | 0.982249 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 164 | 164 | B.1.177.14 | 1 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 142 | 146 | All | 0.000027 |
ORF1ab/nsp1 | 60 | V60del1 | gtT | gt- | 1 | 146 | All | 0 |
ORF1ab/nsp1 | 60 | V60del1 | gTT | g-N | 1 | 146 | All | 0 |
ORF1ab/nsp1 | 60 | V60del1 | GTT | -NN | 1 | 146 | All | 0 |
ORF1ab/nsp1 | 60 | V60del1 | Gtt | -tt | 1 | 146 | All | 0 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 143 | 143 | B.1.177.84 | 0.953333 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 142 | 142 | B.1.2 | 0.00125 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 141 | 141 | B.1.177.26 | 0.986014 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 138 | 138 | AY.4 | 0.000215 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 137 | 137 | AA.1 | 0.992754 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 134 | 134 | B.1.177.28 | 0.992593 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 131 | 131 | B.1.177.3 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 130 | 130 | AA.2 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 130 | 130 | B.1.177.67 | 0.992366 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 126 | 129 | B.1.1.7 | 0.000113 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtG | 3 | 129 | B.1.1.7 | 0.000003 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 114 | 114 | B.1.160.30 | 0.339286 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 114 | 114 | U.2 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 114 | 114 | W.1 | 0.991304 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 110 | 110 | AA.4 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 109 | 109 | AA.7 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 106 | 106 | B.1.177.27 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 103 | 103 | B.1.177.78 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 99 | 99 | B.1.177.71 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 96 | 96 | B.1.177.38 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 90 | 90 | B.1.160 | 0.002807 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 86 | 86 | AY.4 | 0.000134 |
ORF1ab/nsp1 | 60 | V60I | GtT | AtC | 83 | 83 | B.1.177 | 0.001093 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 80 | 80 | B.1.177.88 | 0.987654 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 78 | 78 | U.1 | 1 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 76 | 76 | B.1.1.519 | 0.003018 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 76 | 76 | Y.1 | 0.974359 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 74 | 74 | B.1.177.47 | 0.961039 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 72 | 72 | AY.44 | 0.000438 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 69 | 69 | AY.119 | 0.002436 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 68 | 68 | B.1.1.7 | 0.000061 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 67 | 67 | B.1.177.25 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 65 | 65 | B.1.177.39 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 65 | 65 | B.1.177.68 | 0.984848 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 62 | 62 | AA.5 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 62 | 62 | AA.6 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 62 | 62 | B.1.177.59 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 62 | 62 | B.1.177.74 | 0.939394 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 60 | 60 | AY.44 | 0.000365 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 60 | 60 | B.1.177.36 | 0.967742 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 47 | 47 | B.1.1.174 | 0.158784 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 46 | 46 | AY.86 | 0.038174 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 45 | 45 | AA.8 | 1 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 45 | 45 | B.1.617.2 | 0.000169 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 45 | 45 | XA | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 44 | 44 | V.1 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 42 | 42 | B.1.177.31 | 0.482759 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 39 | 41 | All | 0.000007 |
ORF1ab/nsp1 | 60 | V60G | gTT | gGC | 1 | 41 | All | 0 |
ORF1ab/nsp1 | 60 | V60G | gTT | gGG | 1 | 41 | All | 0 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 41 | 41 | B.1.258 | 0.002728 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 40 | 40 | B.1.617.2 | 0.000151 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 39 | 39 | B.1.1.7 | 0.000035 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 38 | 38 | B.1.617.2 | 0.000143 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 37 | 37 | AA.3 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 37 | 37 | B.1.177.37 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 36 | 36 | B.1.177.89 | 0.878049 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 19 | 33 | AY.4 | 0.00003 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtG | 10 | 33 | AY.4 | 0.000016 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtA | 4 | 33 | AY.4 | 0.000006 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 28 | 31 | AY.25 | 0.000168 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtG | 3 | 31 | AY.25 | 0.000018 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 31 | 31 | V.2 | 1 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 29 | 30 | AY.44 | 0.000177 |
ORF1ab/nsp1 | 60 | V60A | gTT | gCC | 1 | 30 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 30 | 30 | B.1.160.20 | 0.267857 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 28 | 28 | AY.103 | 0.000174 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 26 | 26 | AY.25 | 0.000156 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 26 | 26 | B.1.177.49 | 0.962963 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 26 | 26 | B.1.36 | 0.003793 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 24 | 25 | AY.4 | 0.000037 |
ORF1ab/nsp1 | 60 | V60del1 | GTT | -NN | 1 | 25 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 24 | 24 | B.1.177.66 | 1 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 23 | 23 | B.1.177.61 | 1 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 22 | 22 | A.2.5 | 0.010978 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 22 | 22 | AY.3 | 0.000219 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 22 | 22 | AY.44 | 0.000134 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 22 | 22 | P.1 | 0.000347 |
ORF1ab/nsp1 | 60 | V60L | Gtt | Ctt | 19 | 20 | All | 0.000004 |
ORF1ab/nsp1 | 60 | V60L | GtT | CtA | 1 | 20 | All | 0 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtA | 19 | 19 | AY.46.4 | 0.003126 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 18 | 18 | B | 0.002301 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 18 | 18 | B.1.177.34 | 0.947368 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 15 | 18 | B.1.2 | 0.000132 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtG | 3 | 18 | B.1.2 | 0.000026 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 18 | 18 | B.1.617.2 | 0.000068 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 18 | 18 | C.37 | 0.002089 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 17 | 17 | B.1.1.39 | 0.008665 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 17 | 17 | B.1.1.416 | 0.015385 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 15 | 17 | B.1.1.7 | 0.000013 |
ORF1ab/nsp1 | 60 | V60del1 | gtT | gt- | 1 | 17 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 60 | V60del1 | Gtt | -tt | 1 | 17 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 17 | 17 | B.1.36.39 | 0.037694 |
ORF1ab/nsp1 | 60 | V60del2 | gTT | g-- | 10 | 16 | All | 0.000002 |
ORF1ab/nsp1 | 60 | V60del2 | GTt | --t | 3 | 16 | All | 0.000001 |
ORF1ab/nsp1 | 60 | V60del2 | GTT | --C | 2 | 16 | All | 0 |
ORF1ab/nsp1 | 60 | V60del2 | GTT | A-- | 1 | 16 | All | 0 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 16 | 16 | AY.25 | 0.000096 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 16 | 16 | AY.43 | 0.000071 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 15 | 15 | AY.46.6 | 0.001083 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 15 | 15 | B.1.1.135 | 0.070423 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 15 | 15 | B.1.177.29 | 1 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 12 | 14 | AY.44 | 0.000073 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtA | 1 | 14 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtG | 1 | 14 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtG | 5 | 14 | B.1.617.2 | 0.000019 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 5 | 14 | B.1.617.2 | 0.000019 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtA | 4 | 14 | B.1.617.2 | 0.000015 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 13 | 13 | B.1.1.222 | 0.002652 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 12 | 12 | B.1 | 0.00011 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtG | 7 | 11 | AY.100 | 0.000322 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 4 | 11 | AY.100 | 0.000184 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 11 | 11 | B.1.177.64 | 1 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 11 | 11 | P.1.10 | 0.002964 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 10 | 10 | AY.33 | 0.000668 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 9 | 9 | AY.26 | 0.000255 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 9 | 9 | AY.4.2 | 0.000195 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 8 | 9 | B.1.1 | 0.000145 |
ORF1ab/nsp1 | 60 | V60A | gTT | gCG | 1 | 9 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 8 | 8 | AY.46.3 | 0.00747 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 8 | 8 | B.1.160.32 | 0.034335 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 8 | 8 | B.1.564 | 0.003407 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 7 | 7 | AY.90 | 0.004791 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 7 | 7 | B.1.1.70 | 0.002387 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 7 | 7 | B.1.628 | 0.002467 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 7 | 7 | B.4.1 | 0.132075 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp1 | 60 | V60L | Gtt | Ctt | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 6 | 6 | B.1.1.27 | 0.033898 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 6 | 6 | B.1.1.285 | 0.039216 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 6 | 6 | B.1.258.11 | 0.002378 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 6 | 6 | B.1.416.1 | 0.009375 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 4 | 6 | B.1.509 | 0.003463 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtG | 2 | 6 | B.1.509 | 0.001732 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 5 | 5 | AT.1 | 0.025641 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 4 | 5 | AY.3.1 | 0.000341 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtA | 1 | 5 | AY.3.1 | 0.000085 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 5 | 5 | AY.94 | 0.002213 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 4 | 5 | B.1 | 0.000037 |
ORF1ab/nsp1 | 60 | V60del1 | gTT | g-N | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 5 | 5 | B.1.1.170 | 0.006234 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 5 | 5 | B.1.1.311 | 0.001791 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 3 | 4 | AY.102 | 0.00008 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtA | 1 | 4 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 4 | 4 | B | 0.000511 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp1 | 60 | V60del2 | gTT | g-- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 4 | 4 | B.1.1.315 | 0.033898 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 4 | 4 | B.1.160.16 | 0.003717 |
ORF1ab/nsp1 | 60 | V60I | GtT | AtC | 4 | 4 | B.1.177.62 | 0.004768 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp1 | 60 | V60L | Gtt | Ctt | 3 | 4 | B.1.617.2 | 0.000011 |
ORF1ab/nsp1 | 60 | V60L | GtT | CtA | 1 | 4 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 3 | 3 | AY.8 | 0.001818 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 3 | 3 | B | 0.000383 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 3 | 3 | B.1.1.220 | 0.005576 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 3 | 3 | B.1.160.28 | 0.008772 |
ORF1ab/nsp1 | 60 | V60I | GtT | AtC | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 3 | 3 | B.1.305 | 0.006452 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 3 | 3 | B.1.473 | 0.057692 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp1 | 60 | V60del2 | GTT | --C | 2 | 2 | 0.111111 | |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | 0.111111 | |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | A | 0.000774 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp1 | 60 | V60L | Gtt | Ctt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp1 | 60 | V60del2 | GTt | --t | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp1 | 60 | V60L | Gtt | Ctt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 2 | 2 | B | 0.000256 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 2 | 2 | B.1.1.169 | 0.036364 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 2 | 2 | B.1.1.301 | 0.002358 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.1.421 | 0.060606 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.1.521 | 0.010695 |
ORF1ab/nsp1 | 60 | V60del2 | gTT | g-- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp1 | 60 | V60L | Gtt | Ctt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.160.10 | 0.016129 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.160.14 | 0.004237 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.160.9 | 0.014388 |
ORF1ab/nsp1 | 60 | V60F | GtT | TtC | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp1 | 60 | V60A | gTT | gCC | 2 | 2 | B.1.177.46 | 0.001837 |
ORF1ab/nsp1 | 60 | V60I | GtT | AtC | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.236 | 0.004107 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 2 | 2 | B.1.258.16 | 0.003273 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.389 | 0.002004 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.530 | 0.014286 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.599 | 0.007299 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | C.30 | 0.003454 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 2 | 2 | C.36.1 | 0.008299 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | A.22 | 0.066667 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | AF.1 | 0.037037 |
ORF1ab/nsp1 | 60 | V60T | GTt | ACt | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 60 | V60S | GTt | TCt | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 60 | V60D | gTt | gAt | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 60 | V60R | GTt | CGt | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp1 | 60 | V60del2 | gTT | g-- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 60 | V60del2 | GTt | --t | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp1 | 60 | V60del2 | gTT | g-- | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtA | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtG | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp1 | 60 | V60R | GTt | CGt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp1 | 60 | V60G | gTT | gGG | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 60 | V60L | Gtt | Ctt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtA | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp1 | 60 | V60del2 | gTT | g-- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 60 | V60L | Gtt | Ctt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 60 | V60S | GTt | TCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.1.275 | 0.011236 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.1.405 | 0.083333 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtA | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp1 | 60 | V60D | gTt | gAt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.108 | 0.005814 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.164 | 0.014925 |
ORF1ab/nsp1 | 60 | V60F | GtT | TtC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 60 | V60G | gTT | gGC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp1 | 60 | V60F | GtT | TtC | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | B.1.177.89 | 0.02439 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp1 | 60 | V60T | GTt | ACt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.268 | 0.010417 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.281 | 0.021739 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtA | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.437 | 0.020833 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.466 | 0.023256 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 60 | V60del2 | gTT | g-- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp1 | 60 | V60L | Gtt | Ctt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 60 | V60del2 | GTT | A-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp1 | 60 | V60G | gTt | gGt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.32 | 0.027027 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp1 | 60 | V60F | Gtt | Ttt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp1 | 60 | V60del | GTT | --- | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp1 | 60 | V60A | gTt | gCt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp1 | 60 | V60I | Gtt | Att | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp1 | 60 | V60del1 | gTt | g-t | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp1 | 60 | V60L | Gtt | Ctt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp1 | 60 | V60V | gtT | gtC | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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