CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 59 | G59G | G59G | syn | ggC | ggT | 888 | 832 | 0.936937 | 440-442 |
ORF1ab/nsp1 | 59 | G59G | G59G | syn | ggC | ggA | 888 | 53 | 0.0596847 | 440-442 |
ORF1ab/nsp1 | 59 | G59G | G59G | syn | ggC | ggG | 888 | 3 | 0.00337838 | 440-442 |
ORF1ab/nsp1 | 59 | G59C | G59C | nonsyn | Ggc | Tgc | 607 | 606 | 0.998353 | 440-442 |
ORF1ab/nsp1 | 59 | G59C | G59C | nonsyn | GgC | TgT | 607 | 1 | 0.00164745 | 440-442 |
ORF1ab/nsp1 | 59 | G59del | G59del | del | GGC | --- | 557 | 557 | 1 | 440-442 |
ORF1ab/nsp1 | 59 | G59S | G59S | nonsyn | Ggc | Agc | 299 | 299 | 1 | 440-442 |
ORF1ab/nsp1 | 59 | G59D | G59D | nonsyn | gGc | gAc | 117 | 117 | 1 | 440-442 |
ORF1ab/nsp1 | 59 | G59V | G59V | nonsyn | gGc | gTc | 19 | 17 | 0.894737 | 440-442 |
ORF1ab/nsp1 | 59 | G59V | G59V | nonsyn | gGC | gTG | 19 | 2 | 0.105263 | 440-442 |
ORF1ab/nsp1 | 59 | G59R | G59R | nonsyn | Ggc | Cgc | 7 | 7 | 1 | 440-442 |
ORF1ab/nsp1 | 59 | G59del2 | G59del2 | del | gGC | g-- | 4 | 3 | 0.75 | 440-442 |
ORF1ab/nsp1 | 59 | G59A | G59A | nonsyn | gGc | gCc | 4 | 3 | 0.75 | 440-442 |
ORF1ab/nsp1 | 59 | G59A | G59A | nonsyn | gGC | gCT | 4 | 1 | 0.25 | 440-442 |
ORF1ab/nsp1 | 59 | G59del2 | G59del2 | del | GGc | --c | 4 | 1 | 0.25 | 440-442 |
ORF1ab/nsp1 | 59 | G59del1 | G59del1 | del | Ggc | -gc | 1 | 1 | 1 | 440-442 |
ORF1ab/nsp1 | 59 | G59N | G59N | nonsyn | GGc | AAc | 1 | 1 | 1 | 440-442 |
ORF1ab/nsp1 | 59 | G59K | G59K | nonsyn | GGC | AAG | 1 | 1 | 1 | 440-442 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 832 | 888 | All | 0.000159 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggA | 53 | 888 | All | 0.00001 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggG | 3 | 888 | All | 0.000001 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 606 | 607 | All | 0.000116 |
ORF1ab/nsp1 | 59 | G59C | GgC | TgT | 1 | 607 | All | 0 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 557 | 557 | All | 0.000107 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 299 | 299 | All | 0.000057 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 208 | 208 | AY.4 | 0.000324 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 186 | 187 | B.1.1.7 | 0.000167 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggA | 1 | 187 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 161 | 161 | AY.4 | 0.000251 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 122 | 122 | B.1.1.7 | 0.000109 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 117 | 117 | All | 0.000022 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 83 | 83 | B.1.1.461 | 1 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 79 | 79 | B.1.1.7 | 0.000071 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 70 | 70 | B.1.1.7 | 0.000063 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 65 | 66 | AY.4 | 0.000101 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggA | 1 | 66 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 58 | 60 | B.1.617.2 | 0.000218 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggA | 2 | 60 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 48 | 48 | AY.4 | 0.000075 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 47 | 47 | AY.47 | 0.001462 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 45 | 45 | B.1.617.2 | 0.000169 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 35 | 35 | P.1.14 | 0.001673 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 34 | 34 | AY.39 | 0.00084 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggA | 32 | 32 | B.1.1.332 | 1 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 29 | 29 | B.1.617.1 | 0.00374 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 28 | 28 | AY.6 | 0.001152 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 26 | 26 | AY.23 | 0.001813 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 25 | 25 | B.1.617.2 | 0.000094 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 22 | 22 | AY.44 | 0.000134 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 19 | 20 | AY.103 | 0.000118 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggA | 1 | 20 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 19 | 20 | AY.44 | 0.000116 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggA | 1 | 20 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 59 | G59V | gGc | gTc | 17 | 19 | All | 0.000003 |
ORF1ab/nsp1 | 59 | G59V | gGC | gTG | 2 | 19 | All | 0 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 13 | 19 | B.1 | 0.000119 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggA | 6 | 19 | B.1 | 0.000055 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 17 | 17 | AY.25 | 0.000102 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 16 | 17 | AY.43 | 0.000071 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggA | 1 | 17 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 16 | 16 | AY.25 | 0.000096 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 16 | 16 | AY.26 | 0.000453 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 16 | 16 | AY.43 | 0.000071 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 15 | 15 | P.1 | 0.000236 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 13 | 14 | B.1.177 | 0.000171 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggA | 1 | 14 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 11 | 14 | B.1.2 | 0.000097 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggA | 3 | 14 | B.1.2 | 0.000026 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 13 | 13 | B.1.1.298 | 0.011207 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 13 | 13 | B.1.425 | 0.038922 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 11 | 11 | B.1.621 | 0.000974 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 10 | 10 | AY.5 | 0.000206 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 9 | 9 | AY.4.2 | 0.000195 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 9 | 9 | B.1.382 | 0.080357 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 7 | 8 | B.1.1 | 0.000127 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggA | 1 | 8 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 8 | 8 | B.1.1.216 | 0.007124 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp1 | 59 | G59R | Ggc | Cgc | 7 | 7 | All | 0.000001 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 7 | 7 | AY.12 | 0.002212 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 7 | 7 | AY.90 | 0.004791 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 7 | 7 | B.1.1.209 | 0.0625 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 7 | 7 | B.1.1.317 | 0.002882 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 7 | 7 | B.1.438.1 | 0.000751 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 7 | 7 | C.36 | 0.006375 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 6 | 6 | B.1.1.285 | 0.039216 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 6 | 6 | B.1.177.81 | 0.001136 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 6 | 6 | C.14 | 0.025974 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 5 | 5 | AT.1 | 0.025641 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 5 | 5 | AU.2 | 0.012107 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 5 | 5 | AY.28 | 0.009452 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 5 | 5 | B.1.1.523 | 0.007812 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp1 | 59 | G59del2 | gGC | g-- | 3 | 4 | All | 0.000001 |
ORF1ab/nsp1 | 59 | G59A | gGc | gCc | 3 | 4 | All | 0.000001 |
ORF1ab/nsp1 | 59 | G59del2 | GGc | --c | 1 | 4 | All | 0 |
ORF1ab/nsp1 | 59 | G59A | gGC | gCT | 1 | 4 | All | 0 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 4 | 4 | AY.10 | 0.00212 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggA | 2 | 4 | AY.117 | 0.000169 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 4 | AY.117 | 0.000169 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp1 | 59 | G59V | gGc | gTc | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 4 | 4 | AY.40 | 0.003857 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 4 | 4 | B | 0.000511 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 4 | 4 | B.1.215 | 0.038462 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 4 | 4 | B.1.241 | 0.003247 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 4 | 4 | B.1.425 | 0.011976 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 4 | 4 | Q.3 | 0.00058 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 3 | 3 | AY.48 | 0.001395 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggG | 3 | 3 | B.1.574 | 0.006452 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 2 | 2 | 0.111111 | |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | 0.111111 | |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp1 | 59 | G59A | gGc | gCc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp1 | 59 | G59V | gGc | gTc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp1 | 59 | G59V | gGc | gTc | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | AY.89 | 0.009804 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp1 | 59 | G59R | Ggc | Cgc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp1 | 59 | G59del2 | gGC | g-- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 59 | G59del2 | GGc | --c | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp1 | 59 | G59V | gGc | gTc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | B.23 | 0.005848 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp1 | 59 | G59K | GGC | AAG | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 59 | G59N | GGc | AAc | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 59 | G59del1 | Ggc | -gc | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 59 | G59K | GGC | AAG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp1 | 59 | G59V | gGc | gTc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 59 | G59N | GGc | AAc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp1 | 59 | G59R | Ggc | Cgc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp1 | 59 | G59V | gGC | gTG | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 59 | G59V | gGc | gTc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp1 | 59 | G59del2 | gGC | g-- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 59 | G59R | Ggc | Cgc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp1 | 59 | G59V | gGc | gTc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 59 | G59R | Ggc | Cgc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 1 | 1 | B.1.1.352 | 0.03125 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp1 | 59 | G59V | gGc | gTc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 59 | G59del1 | Ggc | -gc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.103 | 0.019231 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.108 | 0.005814 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp1 | 59 | G59V | gGc | gTc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp1 | 59 | G59V | gGC | gTG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp1 | 59 | G59A | gGc | gCc | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 59 | G59A | gGC | gCT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | B.1.463 | 0.008065 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 59 | G59C | GgC | TgT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 59 | G59V | gGc | gTc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp1 | 59 | G59V | gGc | gTc | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp1 | 59 | G59R | Ggc | Cgc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 59 | G59R | Ggc | Cgc | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp1 | 59 | G59del2 | gGC | g-- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggA | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp1 | 59 | G59del | GGC | --- | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp1 | 59 | G59D | gGc | gAc | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp1 | 59 | G59G | ggC | ggT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp1 | 59 | G59S | Ggc | Agc | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp1 | 59 | G59C | Ggc | Tgc | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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