CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 57

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp157E57KE57KnonsynGaaAaa8148141434-436
ORF1ab/nsp157E57delE57deldelGAA---4964961434-436
ORF1ab/nsp157E57GE57GnonsyngAagGa4264250.997653434-436
ORF1ab/nsp157E57GE57GnonsyngAAgGT42610.00234742434-436
ORF1ab/nsp157E57AE57AnonsyngAagCa1301301434-436
ORF1ab/nsp157E57del1E57del1delgAag-a59550.932203434-436
ORF1ab/nsp157E57del1E57del1delGaa-aa5940.0677966434-436
ORF1ab/nsp157E57EE57EsyngaAgaG46461434-436
ORF1ab/nsp157E57DE57DnonsyngaAgaC22140.636364434-436
ORF1ab/nsp157E57DE57DnonsyngaAgaT2280.363636434-436
ORF1ab/nsp157E57XE57XnonsynGaaTaa13110.846154434-436
ORF1ab/nsp157E57XE57XnonsynGAaTGa1320.153846434-436
ORF1ab/nsp157E57del2E57del2delgAAg--750.714286434-436
ORF1ab/nsp157E57del2E57del2delGAa--a720.285714434-436
ORF1ab/nsp157E57VE57VnonsyngAagTa331434-436
ORF1ab/nsp157E57QE57QnonsynGaaCaa221434-436
ORF1ab/nsp157E57ME57MnonsynGAAATG221434-436
ORF1ab/nsp157E57RE57RnonsynGAAAGG111434-436
ORF1ab/nsp157E57LE57LnonsynGAACTG111434-436
ORF1ab/nsp157E57FE57FnonsynGAATTT111434-436

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp157E57KGaaAaa814814All0.000156
ORF1ab/nsp157E57delGAA---496496All0.000095
ORF1ab/nsp157E57GgAagGa425426All0.000081
ORF1ab/nsp157E57GgAAgGT1426All0
ORF1ab/nsp157E57KGaaAaa207207B.1.1.250.117681
ORF1ab/nsp157E57GgAagGa206206B.1.1.1710.757353
ORF1ab/nsp157E57delGAA---149149AY.40.000232
ORF1ab/nsp157E57AgAagCa130130All0.000025
ORF1ab/nsp157E57KGaaAaa114114AY.40.000177
ORF1ab/nsp157E57KGaaAaa9292B.1.177.780.893204
ORF1ab/nsp157E57AgAagCa8181AY.40.000126
ORF1ab/nsp157E57KGaaAaa7272B.1.2340.0095
ORF1ab/nsp157E57KGaaAaa6969B.1.1.70.000062
ORF1ab/nsp157E57delGAA---6161B.1.1.70.000055
ORF1ab/nsp157E57del1gAag-a5559All0.000011
ORF1ab/nsp157E57del1Gaa-aa459All0.000001
ORF1ab/nsp157E57EgaAgaG4646All0.000009
ORF1ab/nsp157E57KGaaAaa4141B.1.4290.000965
ORF1ab/nsp157E57delGAA---4141B.1.617.20.000154
ORF1ab/nsp157E57GgAagGa3333B.1.1.70.00003
ORF1ab/nsp157E57del1gAag-a2525B.1.1.70.000022
ORF1ab/nsp157E57DgaAgaC1422All0.000003
ORF1ab/nsp157E57DgaAgaT822All0.000002
ORF1ab/nsp157E57GgAagGa2222AY.250.000132
ORF1ab/nsp157E57KGaaAaa2121B.10.000192
ORF1ab/nsp157E57GgAagGa1919AY.1070.008854
ORF1ab/nsp157E57delGAA---1919AY.440.000116
ORF1ab/nsp157E57AgAagCa1919B.6.80.157025
ORF1ab/nsp157E57KGaaAaa1616B.1.20.000141
ORF1ab/nsp157E57delGAA---1515AY.430.000066
ORF1ab/nsp157E57delGAA---1414AY.250.000084
ORF1ab/nsp157E57GgAagGa1414B.1.617.20.000053
ORF1ab/nsp157E57XGaaTaa1113All0.000002
ORF1ab/nsp157E57XGAaTGa213All0
ORF1ab/nsp157E57KGaaAaa1313AY.1030.000081
ORF1ab/nsp157E57GgAagGa1313AY.40.00002
ORF1ab/nsp157E57KGaaAaa1313B.1.360.001897
ORF1ab/nsp157E57KGaaAaa1212AY.430.000053
ORF1ab/nsp157E57delGAA---1111AY.50.000227
ORF1ab/nsp157E57KGaaAaa1111B.1.617.20.000041
ORF1ab/nsp157E57delGAA---1010AY.260.000283
ORF1ab/nsp157E57delGAA---1010AY.4.20.000217
ORF1ab/nsp157E57GgAagGa1010B.1.6200.009461
ORF1ab/nsp157E57GgAagGa99AY.30.00009
ORF1ab/nsp157E57AgAagCa88AY.290.000126
ORF1ab/nsp157E57delGAA---88AY.330.000534
ORF1ab/nsp157E57EgaAgaG88AY.40.000012
ORF1ab/nsp157E57GgAagGa88B.1.10.000145
ORF1ab/nsp157E57delGAA---88B.1.1770.000105
ORF1ab/nsp157E57GgAagGa88B.1.6370.000585
ORF1ab/nsp157E57GgAagGa88C.350.006192
ORF1ab/nsp157E57del2gAAg--57All0.000001
ORF1ab/nsp157E57del2GAa--a27All0
ORF1ab/nsp157E57GgAagGa77AY.200.000272
ORF1ab/nsp157E57delGAA---77AY.30.00007
ORF1ab/nsp157E57EgaAgaG77AY.430.000031
ORF1ab/nsp157E57GgAagGa77AY.440.000043
ORF1ab/nsp157E57KGaaAaa77AY.50.000145
ORF1ab/nsp157E57delGAA---77AY.900.004791
ORF1ab/nsp157E57del1gAag-a77B.1.20.000062
ORF1ab/nsp157E57KGaaAaa77B.1.2210.000497
ORF1ab/nsp157E57delGAA---66AY.1030.000037
ORF1ab/nsp157E57del1gAag-a66AY.440.000037
ORF1ab/nsp157E57KGaaAaa66B.1.10.000109
ORF1ab/nsp157E57delGAA---66B.1.1.2850.039216
ORF1ab/nsp157E57GgAagGa56B.1.2580.000333
ORF1ab/nsp157E57GgAAgGT16B.1.2580.000067
ORF1ab/nsp157E57delGAA---55AT.10.025641
ORF1ab/nsp157E57GgAagGa55AY.1000.00023
ORF1ab/nsp157E57KGaaAaa55B.1.90.030864
ORF1ab/nsp157E57KGaaAaa55P.10.000079
ORF1ab/nsp157E57XGaaTaa440.222222
ORF1ab/nsp157E57delGAA---44AY.1020.000106
ORF1ab/nsp157E57GgAagGa44AY.1030.000025
ORF1ab/nsp157E57delGAA---44AY.290.000063
ORF1ab/nsp157E57KGaaAaa44AY.290.000063
ORF1ab/nsp157E57KGaaAaa44AY.30.00004
ORF1ab/nsp157E57KGaaAaa44AY.420.000161
ORF1ab/nsp157E57GgAagGa44AY.430.000018
ORF1ab/nsp157E57KGaaAaa44AY.440.000024
ORF1ab/nsp157E57delGAA---44AY.9.20.000147
ORF1ab/nsp157E57delGAA---44B.10.000037
ORF1ab/nsp157E57del1Gaa-aa44B.1.1.250.002274
ORF1ab/nsp157E57delGAA---44B.1.1.330.001684
ORF1ab/nsp157E57delGAA---44B.1.1.3480.003185
ORF1ab/nsp157E57EgaAgaG44B.1.1770.000053
ORF1ab/nsp157E57KGaaAaa44B.1.1770.000053
ORF1ab/nsp157E57EgaAgaG44B.1.20.000035
ORF1ab/nsp157E57GgAagGa44B.1.20.000035
ORF1ab/nsp157E57KGaaAaa44B.1.5660.076923
ORF1ab/nsp157E57AgAagCa44B.1.617.20.000015
ORF1ab/nsp157E57del1gAag-a44B.1.617.20.000015
ORF1ab/nsp157E57KGaaAaa44B.1.6370.000292
ORF1ab/nsp157E57AgAagCa44B.60.00364
ORF1ab/nsp157E57VgAagTa33All0.000001
ORF1ab/nsp157E57delGAA---33AY.1190.000106
ORF1ab/nsp157E57delGAA---33AY.1200.000112
ORF1ab/nsp157E57KGaaAaa33AY.250.000018
ORF1ab/nsp157E57KGaaAaa33AY.260.000085
ORF1ab/nsp157E57KGaaAaa33AY.300.001187
ORF1ab/nsp157E57KGaaAaa33AY.390.000074
ORF1ab/nsp157E57EgaAgaG33AY.4.20.000065
ORF1ab/nsp157E57delGAA---33AY.4.50.000322
ORF1ab/nsp157E57GgAagGa33AY.470.000093
ORF1ab/nsp157E57delGAA---33AY.540.000286
ORF1ab/nsp157E57delGAA---33AY.60.000123
ORF1ab/nsp157E57delGAA---33AY.610.000314
ORF1ab/nsp157E57GgAagGa33B.10.000027
ORF1ab/nsp157E57EgaAgaG33B.1.10.000054
ORF1ab/nsp157E57delGAA---33B.1.10.000054
ORF1ab/nsp157E57GgAagGa33B.1.1.330.001263
ORF1ab/nsp157E57del2gAAg--33B.1.1.70.000003
ORF1ab/nsp157E57EgaAgaG33B.1.1.70.000003
ORF1ab/nsp157E57KGaaAaa33B.1.2650.003812
ORF1ab/nsp157E57KGaaAaa33D.20.000225
ORF1ab/nsp157E57KGaaAaa33P.1.120.001452
ORF1ab/nsp157E57KGaaAaa33P.1.150.000697
ORF1ab/nsp157E57KGaaAaa33Q.80.000495
ORF1ab/nsp157E57QGaaCaa220.111111
ORF1ab/nsp157E57MGAAATG220.111111
ORF1ab/nsp157E57AgAagCa22A0.000774
ORF1ab/nsp157E57MGAAATG22All0
ORF1ab/nsp157E57QGaaCaa22All0
ORF1ab/nsp157E57AgAagCa22AY.1100.000225
ORF1ab/nsp157E57delGAA---22AY.1160.000574
ORF1ab/nsp157E57GgAagGa22AY.1200.000074
ORF1ab/nsp157E57delGAA---22AY.1210.000271
ORF1ab/nsp157E57KGaaAaa22AY.200.000078
ORF1ab/nsp157E57GgAagGa22AY.340.000194
ORF1ab/nsp157E57delGAA---22AY.390.000049
ORF1ab/nsp157E57KGaaAaa22AY.39.10.000079
ORF1ab/nsp157E57del2gAAg--12AY.440.000006
ORF1ab/nsp157E57del2GAa--a12AY.440.000006
ORF1ab/nsp157E57GgAagGa22AY.46.60.000144
ORF1ab/nsp157E57KGaaAaa22AY.60.000082
ORF1ab/nsp157E57KGaaAaa22AY.690.000373
ORF1ab/nsp157E57delGAA---22AY.98.10.000097
ORF1ab/nsp157E57DgaAgaC22B0.000256
ORF1ab/nsp157E57del1gAag-a22B0.000256
ORF1ab/nsp157E57XGaaTaa22B.10.000018
ORF1ab/nsp157E57DgaAgaC12B.1.10.000018
ORF1ab/nsp157E57DgaAgaT12B.1.10.000018
ORF1ab/nsp157E57KGaaAaa22B.1.1.2160.001781
ORF1ab/nsp157E57DgaAgaT22B.1.1.70.000002
ORF1ab/nsp157E57AgAagCa22B.1.1.70.000002
ORF1ab/nsp157E57delGAA---22B.1.1280.001271
ORF1ab/nsp157E57delGAA---22B.1.1600.000062
ORF1ab/nsp157E57KGaaAaa22B.1.1600.000062
ORF1ab/nsp157E57XGaaTaa12B.1.1770.000013
ORF1ab/nsp157E57DgaAgaC12B.1.1770.000013
ORF1ab/nsp157E57XGAaTGa12B.1.1770.000013
ORF1ab/nsp157E57DgaAgaT12B.1.1770.000013
ORF1ab/nsp157E57KGaaAaa22B.1.177.750.002081
ORF1ab/nsp157E57EgaAgaG22B.1.177.750.002081
ORF1ab/nsp157E57delGAA---22B.1.20.000018
ORF1ab/nsp157E57KGaaAaa22B.1.3510.000059
ORF1ab/nsp157E57VgAagTa22B.1.3510.000059
ORF1ab/nsp157E57delGAA---22B.1.36.170.000988
ORF1ab/nsp157E57delGAA---22B.1.4270.000101
ORF1ab/nsp157E57DgaAgaC22B.1.466.20.000782
ORF1ab/nsp157E57KGaaAaa22B.1.5260.000047
ORF1ab/nsp157E57EgaAgaG22B.1.617.20.000008
ORF1ab/nsp157E57DgaAgaC12B.1.617.20.000004
ORF1ab/nsp157E57DgaAgaT12B.1.617.20.000004
ORF1ab/nsp157E57KGaaAaa22B.1.6210.000177
ORF1ab/nsp157E57delGAA---22N.40.008511
ORF1ab/nsp157E57KGaaAaa22N.50.003534
ORF1ab/nsp157E57delGAA---22N.60.014184
ORF1ab/nsp157E57EgaAgaG22P.10.000032
ORF1ab/nsp157E57delGAA---22P.20.000373
ORF1ab/nsp157E57GgAagGa22Q.80.00033
ORF1ab/nsp157E57del1gAag-a11A0.000387
ORF1ab/nsp157E57delGAA---11A0.000387
ORF1ab/nsp157E57KGaaAaa11A.2.50.000499
ORF1ab/nsp157E57KGaaAaa11A.23.10.000704
ORF1ab/nsp157E57RGAAAGG11All0
ORF1ab/nsp157E57LGAACTG11All0
ORF1ab/nsp157E57FGAATTT11All0
ORF1ab/nsp157E57delGAA---11AY.10.000396
ORF1ab/nsp157E57KGaaAaa11AY.1020.000027
ORF1ab/nsp157E57AgAagCa11AY.1020.000027
ORF1ab/nsp157E57AgAagCa11AY.1030.000006
ORF1ab/nsp157E57del1gAag-a11AY.1030.000006
ORF1ab/nsp157E57del2gAAg--11AY.1130.000142
ORF1ab/nsp157E57delGAA---11AY.120.000316
ORF1ab/nsp157E57KGaaAaa11AY.1210.000135
ORF1ab/nsp157E57DgaAgaC11AY.16.10.00047
ORF1ab/nsp157E57delGAA---11AY.190.00114
ORF1ab/nsp157E57KGaaAaa11AY.230.00007
ORF1ab/nsp157E57delGAA---11AY.230.00007
ORF1ab/nsp157E57RGAAAGG11AY.230.00007
ORF1ab/nsp157E57GgAagGa11AY.23.10.000417
ORF1ab/nsp157E57KGaaAaa11AY.23.10.000417
ORF1ab/nsp157E57GgAagGa11AY.260.000028
ORF1ab/nsp157E57del1gAag-a11AY.260.000028
ORF1ab/nsp157E57delGAA---11AY.270.000065
ORF1ab/nsp157E57AgAagCa11AY.29.10.000221
ORF1ab/nsp157E57EgaAgaG11AY.30.00001
ORF1ab/nsp157E57KGaaAaa11AY.3.10.000085
ORF1ab/nsp157E57delGAA---11AY.340.000097
ORF1ab/nsp157E57delGAA---11AY.350.000233
ORF1ab/nsp157E57delGAA---11AY.360.000148
ORF1ab/nsp157E57AgAagCa11AY.360.000148
ORF1ab/nsp157E57delGAA---11AY.380.000499
ORF1ab/nsp157E57GgAagGa11AY.390.000025
ORF1ab/nsp157E57delGAA---11AY.39.10.00004
ORF1ab/nsp157E57KGaaAaa11AY.39.1.10.000725
ORF1ab/nsp157E57del2GAa--a11AY.40.000002
ORF1ab/nsp157E57DgaAgaC11AY.4.2.10.000149
ORF1ab/nsp157E57KGaaAaa11AY.4.40.000409
ORF1ab/nsp157E57GgAagGa11AY.4.40.000409
ORF1ab/nsp157E57GgAagGa11AY.410.000294
ORF1ab/nsp157E57DgaAgaC11AY.420.00004
ORF1ab/nsp157E57LGAACTG11AY.430.000004
ORF1ab/nsp157E57del1gAag-a11AY.430.000004
ORF1ab/nsp157E57delGAA---11AY.450.000122
ORF1ab/nsp157E57KGaaAaa11AY.450.000122
ORF1ab/nsp157E57delGAA---11AY.460.000104
ORF1ab/nsp157E57EgaAgaG11AY.460.000104
ORF1ab/nsp157E57GgAagGa11AY.46.50.000198
ORF1ab/nsp157E57delGAA---11AY.46.50.000198
ORF1ab/nsp157E57del1gAag-a11AY.470.000031
ORF1ab/nsp157E57delGAA---11AY.470.000031
ORF1ab/nsp157E57KGaaAaa11AY.470.000031
ORF1ab/nsp157E57del1gAag-a11AY.480.000465
ORF1ab/nsp157E57GgAagGa11AY.50.000021
ORF1ab/nsp157E57KGaaAaa11AY.5.40.000277
ORF1ab/nsp157E57DgaAgaC11AY.550.000917
ORF1ab/nsp157E57XGaaTaa11AY.590.00053
ORF1ab/nsp157E57KGaaAaa11AY.610.000105
ORF1ab/nsp157E57GgAagGa11AY.650.000533
ORF1ab/nsp157E57delGAA---11AY.670.000464
ORF1ab/nsp157E57DgaAgaC11AY.690.000187
ORF1ab/nsp157E57XGAaTGa11AY.690.000187
ORF1ab/nsp157E57delGAA---11AY.70.000196
ORF1ab/nsp157E57delGAA---11AY.710.000475
ORF1ab/nsp157E57GgAagGa11AY.710.000475
ORF1ab/nsp157E57delGAA---11AY.750.000056
ORF1ab/nsp157E57del1gAag-a11AY.790.001211
ORF1ab/nsp157E57delGAA---11AY.850.000427
ORF1ab/nsp157E57KGaaAaa11AY.90.000068
ORF1ab/nsp157E57delGAA---11AY.9.10.000084
ORF1ab/nsp157E57AgAagCa11AY.9.20.000037
ORF1ab/nsp157E57delGAA---11AY.950.000761
ORF1ab/nsp157E57EgaAgaG11AY.970.001701
ORF1ab/nsp157E57KGaaAaa11AY.980.000079
ORF1ab/nsp157E57AgAagCa11B0.000128
ORF1ab/nsp157E57DgaAgaC11B.10.000009
ORF1ab/nsp157E57del1gAag-a11B.10.000009
ORF1ab/nsp157E57EgaAgaG11B.10.000009
ORF1ab/nsp157E57del1gAag-a11B.1.10.000018
ORF1ab/nsp157E57AgAagCa11B.1.10.000018
ORF1ab/nsp157E57KGaaAaa11B.1.1.1590.004673
ORF1ab/nsp157E57delGAA---11B.1.1.1700.001247
ORF1ab/nsp157E57delGAA---11B.1.1.2320.001815
ORF1ab/nsp157E57delGAA---11B.1.1.250.000569
ORF1ab/nsp157E57KGaaAaa11B.1.1.2860.002899
ORF1ab/nsp157E57GgAagGa11B.1.1.2940.001266
ORF1ab/nsp157E57delGAA---11B.1.1.2980.000862
ORF1ab/nsp157E57GgAagGa11B.1.1.3060.000438
ORF1ab/nsp157E57delGAA---11B.1.1.3110.000358
ORF1ab/nsp157E57XGaaTaa11B.1.1.3180.000302
ORF1ab/nsp157E57delGAA---11B.1.1.3220.008772
ORF1ab/nsp157E57EgaAgaG11B.1.1.3500.04
ORF1ab/nsp157E57delGAA---11B.1.1.390.00051
ORF1ab/nsp157E57VgAagTa11B.1.1.70.000001
ORF1ab/nsp157E57FGAATTT11B.1.1.70.000001
ORF1ab/nsp157E57delGAA---11B.1.1080.005814
ORF1ab/nsp157E57GgAagGa11B.1.1120.005181
ORF1ab/nsp157E57delGAA---11B.1.1490.003425
ORF1ab/nsp157E57GgAagGa11B.1.1600.000031
ORF1ab/nsp157E57GgAagGa11B.1.1770.000013
ORF1ab/nsp157E57delGAA---11B.1.177.110.001698
ORF1ab/nsp157E57delGAA---11B.1.177.160.000664
ORF1ab/nsp157E57delGAA---11B.1.177.180.00116
ORF1ab/nsp157E57delGAA---11B.1.177.510.004566
ORF1ab/nsp157E57EgaAgaG11B.1.177.570.000281
ORF1ab/nsp157E57delGAA---11B.1.177.570.000281
ORF1ab/nsp157E57delGAA---11B.1.177.650.000665
ORF1ab/nsp157E57delGAA---11B.1.177.70.000165
ORF1ab/nsp157E57delGAA---11B.1.177.730.000566
ORF1ab/nsp157E57GgAagGa11B.1.177.810.000189
ORF1ab/nsp157E57delGAA---11B.1.177.870.000728
ORF1ab/nsp157E57delGAA---11B.1.177.90.001332
ORF1ab/nsp157E57delGAA---11B.1.1790.003759
ORF1ab/nsp157E57DgaAgaT11B.1.20.000009
ORF1ab/nsp157E57XGaaTaa11B.1.20.000009
ORF1ab/nsp157E57GgAagGa11B.1.2400.000216
ORF1ab/nsp157E57KGaaAaa11B.1.2790.000514
ORF1ab/nsp157E57delGAA---11B.1.2800.007143
ORF1ab/nsp157E57KGaaAaa11B.1.350.008475
ORF1ab/nsp157E57GgAagGa11B.1.3510.00003
ORF1ab/nsp157E57del1gAag-a11B.1.3510.00003
ORF1ab/nsp157E57KGaaAaa11B.1.351.30.000876
ORF1ab/nsp157E57KGaaAaa11B.1.3960.000706
ORF1ab/nsp157E57GgAagGa11B.1.4040.001302
ORF1ab/nsp157E57delGAA---11B.1.4290.000024
ORF1ab/nsp157E57KGaaAaa11B.1.466.20.000391
ORF1ab/nsp157E57GgAagGa11B.1.5240.001406
ORF1ab/nsp157E57delGAA---11B.1.5250.000113
ORF1ab/nsp157E57delGAA---11B.1.5260.000024
ORF1ab/nsp157E57KGaaAaa11B.1.5800.004065
ORF1ab/nsp157E57KGaaAaa11B.1.5960.000087
ORF1ab/nsp157E57EgaAgaG11B.1.617.10.000129
ORF1ab/nsp157E57delGAA---11B.1.6210.000089
ORF1ab/nsp157E57DgaAgaC11B.1.6210.000089
ORF1ab/nsp157E57delGAA---11B.230.002924
ORF1ab/nsp157E57DgaAgaT11B.4.40.018868
ORF1ab/nsp157E57GgAagGa11B.550.00295
ORF1ab/nsp157E57XGaaTaa11B.6.60.000889
ORF1ab/nsp157E57delGAA---11C.350.000774
ORF1ab/nsp157E57KGaaAaa11C.370.000116
ORF1ab/nsp157E57GgAagGa11P.10.000016
ORF1ab/nsp157E57DgaAgaT11P.1.10.000318
ORF1ab/nsp157E57delGAA---11P.1.120.000484
ORF1ab/nsp157E57AgAagCa11P.1.20.001156
ORF1ab/nsp157E57GgAagGa11Q.10.000126
ORF1ab/nsp157E57del1gAag-a11Q.40.000455
ORF1ab/nsp157E57EgaAgaG11R.10.00009
ORF1ab/nsp157E57KGaaAaa11R.10.00009