CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 48

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp148D48GD48GnonsyngAtgGt159215921407-409
ORF1ab/nsp148D48ND48NnonsynGatAat102610261407-409
ORF1ab/nsp148D48DD48DsyngaTgaC4844841407-409
ORF1ab/nsp148D48VD48VnonsyngAtgTt3223221407-409
ORF1ab/nsp148D48YD48YnonsynGatTat2262261407-409
ORF1ab/nsp148D48ED48EnonsyngaTgaA116750.646552407-409
ORF1ab/nsp148D48ED48EnonsyngaTgaG116410.353448407-409
ORF1ab/nsp148D48delD48deldelGAT---98981407-409
ORF1ab/nsp148D48AD48AnonsyngAtgCt57571407-409
ORF1ab/nsp148D48HD48HnonsynGatCat441407-409
ORF1ab/nsp148D48TD48TnonsynGATACA331407-409
ORF1ab/nsp148D48del1D48del1delGat-at210.5407-409
ORF1ab/nsp148D48del1D48del1delgaTga-210.5407-409
ORF1ab/nsp148D48CD48CnonsynGATTGC111407-409
ORF1ab/nsp148D48del2D48del2delgATg--111407-409
ORF1ab/nsp148D48LD48LnonsynGATTTG111407-409

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp148D48GgAtgGt15921592All0.000304
ORF1ab/nsp148D48GgAtgGt12101210B.1.177.170.993432
ORF1ab/nsp148D48NGatAat10261026All0.000196
ORF1ab/nsp148D48NGatAat703703B.1.1.70.000629
ORF1ab/nsp148D48DgaTgaC484484All0.000093
ORF1ab/nsp148D48VgAtgTt322322All0.000062
ORF1ab/nsp148D48VgAtgTt317317AY.1170.026792
ORF1ab/nsp148D48YGatTat226226All0.000043
ORF1ab/nsp148D48EgaTgaA75116All0.000014
ORF1ab/nsp148D48EgaTgaG41116All0.000008
ORF1ab/nsp148D48NGatAat110110AY.1030.000683
ORF1ab/nsp148D48GgAtgGt106106B.1.1770.001396
ORF1ab/nsp148D48delGAT---9898All0.000019
ORF1ab/nsp148D48DgaTgaC9595AY.250.000571
ORF1ab/nsp148D48YGatTat8989B.1.1.70.00008
ORF1ab/nsp148D48DgaTgaC8888AY.390.002175
ORF1ab/nsp148D48DgaTgaC6767B.1.1.70.00006
ORF1ab/nsp148D48GgAtgGt6161B.1.3510.001813
ORF1ab/nsp148D48GgAtgGt5858B.1.1.70.000052
ORF1ab/nsp148D48AgAtgCt5757All0.000011
ORF1ab/nsp148D48NGatAat5757B.1.5170.024338
ORF1ab/nsp148D48DgaTgaC4646AY.40.000072
ORF1ab/nsp148D48NGatAat3434AY.40.000053
ORF1ab/nsp148D48DgaTgaC2828AY.4.20.000607
ORF1ab/nsp148D48EgaTgaA2427AY.430.000106
ORF1ab/nsp148D48EgaTgaG327AY.430.000013
ORF1ab/nsp148D48delGAT---2727B.1.1.70.000024
ORF1ab/nsp148D48DgaTgaC2626B.1.617.20.000098
ORF1ab/nsp148D48GgAtgGt2222AY.440.000134
ORF1ab/nsp148D48NGatAat2020B.1.617.20.000075
ORF1ab/nsp148D48EgaTgaG1718AY.98.10.000823
ORF1ab/nsp148D48EgaTgaA118AY.98.10.000048
ORF1ab/nsp148D48GgAtgGt1717AY.40.000026
ORF1ab/nsp148D48NGatAat1616AY.430.000071
ORF1ab/nsp148D48EgaTgaA1616B.1.1.5230.025
ORF1ab/nsp148D48GgAtgGt1515AY.1020.000398
ORF1ab/nsp148D48DgaTgaC1515AY.440.000091
ORF1ab/nsp148D48YGatTat1414AY.200.000544
ORF1ab/nsp148D48NGatAat1313B.1.10.000236
ORF1ab/nsp148D48EgaTgaA1213B.1.1.70.000011
ORF1ab/nsp148D48EgaTgaG113B.1.1.70.000001
ORF1ab/nsp148D48GgAtgGt1313B.1.617.20.000049
ORF1ab/nsp148D48AgAtgCt1212AY.40.000019
ORF1ab/nsp148D48AgAtgCt1212B.1.1.70.000011
ORF1ab/nsp148D48GgAtgGt1111AY.1030.000068
ORF1ab/nsp148D48DgaTgaC1111AY.290.000174
ORF1ab/nsp148D48DgaTgaC1111B.1.1770.000145
ORF1ab/nsp148D48GgAtgGt1111B.1.258.140.010784
ORF1ab/nsp148D48YGatTat1111B.1.3110.00302
ORF1ab/nsp148D48YGatTat1010AY.40.000016
ORF1ab/nsp148D48DgaTgaC1010AY.910.007305
ORF1ab/nsp148D48YGatTat1010B.1.20.000088
ORF1ab/nsp148D48NGatAat99AY.1130.001282
ORF1ab/nsp148D48YGatTat99AY.250.000054
ORF1ab/nsp148D48DgaTgaC99AY.30.00009
ORF1ab/nsp148D48delGAT---99AY.40.000014
ORF1ab/nsp148D48YGatTat88AY.1030.00005
ORF1ab/nsp148D48YGatTat77AY.430.000031
ORF1ab/nsp148D48AgAtgCt77AY.440.000043
ORF1ab/nsp148D48NGatAat77AY.440.000043
ORF1ab/nsp148D48DgaTgaC77B.10.000064
ORF1ab/nsp148D48YGatTat77B.10.000064
ORF1ab/nsp148D48GgAtgGt77B.1.36.290.003621
ORF1ab/nsp148D48DgaTgaC66AY.1020.000159
ORF1ab/nsp148D48GgAtgGt66B.10.000055
ORF1ab/nsp148D48delGAT---66B.1.1770.000079
ORF1ab/nsp148D48AgAtgCt66B.1.617.20.000023
ORF1ab/nsp148D48EgaTgaG46B.1.617.20.000015
ORF1ab/nsp148D48EgaTgaA26B.1.617.20.000008
ORF1ab/nsp148D48NGatAat55AY.340.000485
ORF1ab/nsp148D48DgaTgaC55AY.430.000022
ORF1ab/nsp148D48DgaTgaC55AY.470.000156
ORF1ab/nsp148D48DgaTgaC55B.1.1.2280.015244
ORF1ab/nsp148D48DgaTgaC55B.1.20.000044
ORF1ab/nsp148D48AgAtgCt55B.1.20.000044
ORF1ab/nsp148D48HGatCat44All0.000001
ORF1ab/nsp148D48GgAtgGt44AY.1130.00057
ORF1ab/nsp148D48YGatTat44AY.1200.000149
ORF1ab/nsp148D48YGatTat44AY.230.000279
ORF1ab/nsp148D48GgAtgGt44AY.250.000024
ORF1ab/nsp148D48NGatAat44B.10.000037
ORF1ab/nsp148D48GgAtgGt44B.1.10.000073
ORF1ab/nsp148D48delGAT---44B.1.1.330.001684
ORF1ab/nsp148D48delGAT---44B.1.1.3480.003185
ORF1ab/nsp148D48EgaTgaA44B.1.20.000035
ORF1ab/nsp148D48DgaTgaC44B.1.2210.000284
ORF1ab/nsp148D48YGatTat44P.10.000063
ORF1ab/nsp148D48TGATACA33All0.000001
ORF1ab/nsp148D48DgaTgaC33AY.1030.000019
ORF1ab/nsp148D48DgaTgaC33AY.1210.000406
ORF1ab/nsp148D48delGAT---33AY.250.000018
ORF1ab/nsp148D48delGAT---33AY.4.50.000322
ORF1ab/nsp148D48GgAtgGt33AY.420.000121
ORF1ab/nsp148D48GgAtgGt33AY.430.000013
ORF1ab/nsp148D48delGAT---33AY.430.000013
ORF1ab/nsp148D48YGatTat33AY.440.000018
ORF1ab/nsp148D48YGatTat33AY.470.000093
ORF1ab/nsp148D48DgaTgaC33AY.90.000203
ORF1ab/nsp148D48GgAtgGt33B.1.2580.0002
ORF1ab/nsp148D48YGatTat33B.1.5260.000071
ORF1ab/nsp148D48GgAtgGt33C.370.000348
ORF1ab/nsp148D48EgaTgaG33Q.70.003333
ORF1ab/nsp148D48NGatAat33Q.80.000495
ORF1ab/nsp148D48del1gaTga-12All0
ORF1ab/nsp148D48del1Gat-at12All0
ORF1ab/nsp148D48GgAtgGt22AY.1000.000092
ORF1ab/nsp148D48EgaTgaG22AY.1020.000053
ORF1ab/nsp148D48NGatAat22AY.1170.000169
ORF1ab/nsp148D48delGAT---22AY.1200.000074
ORF1ab/nsp148D48GgAtgGt22AY.200.000078
ORF1ab/nsp148D48NGatAat22AY.200.000078
ORF1ab/nsp148D48NGatAat22AY.250.000012
ORF1ab/nsp148D48HGatCat22AY.250.000012
ORF1ab/nsp148D48GgAtgGt22AY.260.000057
ORF1ab/nsp148D48GgAtgGt22AY.30.00002
ORF1ab/nsp148D48NGatAat22AY.30.00002
ORF1ab/nsp148D48DgaTgaC22AY.3.10.000171
ORF1ab/nsp148D48GgAtgGt22AY.330.000134
ORF1ab/nsp148D48DgaTgaC22AY.39.10.000079
ORF1ab/nsp148D48GgAtgGt22AY.4.10.001475
ORF1ab/nsp148D48YGatTat22AY.50.000041
ORF1ab/nsp148D48GgAtgGt22AY.750.000112
ORF1ab/nsp148D48EgaTgaA12AY.90.000068
ORF1ab/nsp148D48EgaTgaG12AY.90.000068
ORF1ab/nsp148D48AgAtgCt22B.10.000018
ORF1ab/nsp148D48EgaTgaA12B.10.000009
ORF1ab/nsp148D48EgaTgaG12B.10.000009
ORF1ab/nsp148D48YGatTat22B.1.10.000036
ORF1ab/nsp148D48EgaTgaA22B.1.177.860.000367
ORF1ab/nsp148D48NGatAat22B.1.20.000018
ORF1ab/nsp148D48YGatTat22B.1.2580.000133
ORF1ab/nsp148D48DgaTgaC22B.1.3510.000059
ORF1ab/nsp148D48delGAT---22B.1.36.170.000988
ORF1ab/nsp148D48DgaTgaC22B.1.36.20.021505
ORF1ab/nsp148D48YGatTat22B.1.4270.000101
ORF1ab/nsp148D48delGAT---22B.1.4270.000101
ORF1ab/nsp148D48YGatTat22B.1.4290.000047
ORF1ab/nsp148D48DgaTgaC22B.1.4290.000047
ORF1ab/nsp148D48EgaTgaA22B.1.4290.000047
ORF1ab/nsp148D48AgAtgCt22B.1.4290.000047
ORF1ab/nsp148D48NGatAat22B.1.4730.038462
ORF1ab/nsp148D48YGatTat22B.1.5970.009259
ORF1ab/nsp148D48delGAT---22B.1.617.20.000008
ORF1ab/nsp148D48YGatTat22B.1.617.20.000008
ORF1ab/nsp148D48GgAtgGt22C.10.004785
ORF1ab/nsp148D48delGAT---22N.40.008511
ORF1ab/nsp148D48delGAT---22N.60.014184
ORF1ab/nsp148D48NGatAat22P.1.70.000639
ORF1ab/nsp148D48delGAT---22P.20.000373
ORF1ab/nsp148D48NGatAat22R.10.00018
ORF1ab/nsp148D48delGAT---11A0.000387
ORF1ab/nsp148D48EgaTgaA11A.10.000282
ORF1ab/nsp148D48AgAtgCt11A.2.20.001689
ORF1ab/nsp148D48CGATTGC11All0
ORF1ab/nsp148D48LGATTTG11All0
ORF1ab/nsp148D48del2gATg--11All0
ORF1ab/nsp148D48YGatTat11AT.10.005128
ORF1ab/nsp148D48NGatAat11AY.1000.000046
ORF1ab/nsp148D48YGatTat11AY.1020.000027
ORF1ab/nsp148D48VgAtgTt11AY.1020.000027
ORF1ab/nsp148D48AgAtgCt11AY.1030.000006
ORF1ab/nsp148D48EgaTgaA11AY.1100.000113
ORF1ab/nsp148D48GgAtgGt11AY.1100.000113
ORF1ab/nsp148D48EgaTgaA11AY.1130.000142
ORF1ab/nsp148D48delGAT---11AY.1160.000287
ORF1ab/nsp148D48EgaTgaG11AY.116.10.000311
ORF1ab/nsp148D48NGatAat11AY.1190.000035
ORF1ab/nsp148D48delGAT---11AY.120.000316
ORF1ab/nsp148D48YGatTat11AY.120.000316
ORF1ab/nsp148D48EgaTgaG11AY.120.000316
ORF1ab/nsp148D48EgaTgaA11AY.1200.000037
ORF1ab/nsp148D48DgaTgaC11AY.160.00038
ORF1ab/nsp148D48YGatTat11AY.160.00038
ORF1ab/nsp148D48delGAT---11AY.230.00007
ORF1ab/nsp148D48DgaTgaC11AY.230.00007
ORF1ab/nsp148D48DgaTgaC11AY.260.000028
ORF1ab/nsp148D48DgaTgaC11AY.270.000065
ORF1ab/nsp148D48NGatAat11AY.270.000065
ORF1ab/nsp148D48AgAtgCt11AY.290.000016
ORF1ab/nsp148D48NGatAat11AY.290.000016
ORF1ab/nsp148D48DgaTgaC11AY.29.10.000221
ORF1ab/nsp148D48YGatTat11AY.30.00001
ORF1ab/nsp148D48EgaTgaG11AY.30.00001
ORF1ab/nsp148D48NGatAat11AY.3.10.000085
ORF1ab/nsp148D48GgAtgGt11AY.300.000396
ORF1ab/nsp148D48DgaTgaC11AY.34.10.00051
ORF1ab/nsp148D48YGatTat11AY.360.000148
ORF1ab/nsp148D48delGAT---11AY.380.000499
ORF1ab/nsp148D48NGatAat11AY.380.000499
ORF1ab/nsp148D48GgAtgGt11AY.390.000025
ORF1ab/nsp148D48NGatAat11AY.390.000025
ORF1ab/nsp148D48YGatTat11AY.39.20.001541
ORF1ab/nsp148D48NGatAat11AY.4.20.000022
ORF1ab/nsp148D48AgAtgCt11AY.4.20.000022
ORF1ab/nsp148D48YGatTat11AY.4.40.000409
ORF1ab/nsp148D48del1Gat-at11AY.4.50.000107
ORF1ab/nsp148D48AgAtgCt11AY.410.000294
ORF1ab/nsp148D48DgaTgaC11AY.420.00004
ORF1ab/nsp148D48AgAtgCt11AY.430.000004
ORF1ab/nsp148D48EgaTgaG11AY.440.000006
ORF1ab/nsp148D48YGatTat11AY.450.000122
ORF1ab/nsp148D48delGAT---11AY.460.000104
ORF1ab/nsp148D48NGatAat11AY.46.50.000198
ORF1ab/nsp148D48AgAtgCt11AY.50.000021
ORF1ab/nsp148D48GgAtgGt11AY.500.000799
ORF1ab/nsp148D48GgAtgGt11AY.540.000095
ORF1ab/nsp148D48NGatAat11AY.540.000095
ORF1ab/nsp148D48DgaTgaC11AY.590.00053
ORF1ab/nsp148D48EgaTgaG11AY.60.000041
ORF1ab/nsp148D48delGAT---11AY.60.000041
ORF1ab/nsp148D48GgAtgGt11AY.600.000938
ORF1ab/nsp148D48DgaTgaC11AY.610.000105
ORF1ab/nsp148D48EgaTgaA11AY.610.000105
ORF1ab/nsp148D48YGatTat11AY.680.000274
ORF1ab/nsp148D48GgAtgGt11AY.690.000187
ORF1ab/nsp148D48NGatAat11AY.7.10.000113
ORF1ab/nsp148D48YGatTat11AY.7.10.000113
ORF1ab/nsp148D48YGatTat11AY.750.000056
ORF1ab/nsp148D48DgaTgaC11AY.75.10.00018
ORF1ab/nsp148D48YGatTat11AY.75.10.00018
ORF1ab/nsp148D48delGAT---11AY.9.10.000084
ORF1ab/nsp148D48YGatTat11AY.9.20.000037
ORF1ab/nsp148D48delGAT---11AY.9.20.000037
ORF1ab/nsp148D48NGatAat11AY.9.20.000037
ORF1ab/nsp148D48EgaTgaG11AY.920.000287
ORF1ab/nsp148D48delGAT---11AY.950.000761
ORF1ab/nsp148D48DgaTgaC11AY.980.000079
ORF1ab/nsp148D48NGatAat11AY.99.20.000092
ORF1ab/nsp148D48NGatAat11B0.000128
ORF1ab/nsp148D48delGAT---11B.10.000009
ORF1ab/nsp148D48TGATACA11B.10.000009
ORF1ab/nsp148D48LGATTTG11B.10.000009
ORF1ab/nsp148D48DgaTgaC11B.1.10.000018
ORF1ab/nsp148D48EgaTgaA11B.1.10.000018
ORF1ab/nsp148D48GgAtgGt11B.1.1.10.000327
ORF1ab/nsp148D48delGAT---11B.1.1.1700.001247
ORF1ab/nsp148D48delGAT---11B.1.1.2320.001815
ORF1ab/nsp148D48NGatAat11B.1.1.2360.006897
ORF1ab/nsp148D48EgaTgaG11B.1.1.2580.003257
ORF1ab/nsp148D48AgAtgCt11B.1.1.2670.010101
ORF1ab/nsp148D48GgAtgGt11B.1.1.280.000311
ORF1ab/nsp148D48VgAtgTt11B.1.1.2990.012195
ORF1ab/nsp148D48DgaTgaC11B.1.1.3040.002809
ORF1ab/nsp148D48TGATACA11B.1.1.3060.000438
ORF1ab/nsp148D48delGAT---11B.1.1.3110.000358
ORF1ab/nsp148D48delGAT---11B.1.1.3220.008772
ORF1ab/nsp148D48NGatAat11B.1.1.3260.001761
ORF1ab/nsp148D48delGAT---11B.1.1.390.00051
ORF1ab/nsp148D48NGatAat11B.1.1.4860.001577
ORF1ab/nsp148D48DgaTgaC11B.1.1.5180.006329
ORF1ab/nsp148D48AgAtgCt11B.1.1.5190.00004
ORF1ab/nsp148D48YGatTat11B.1.1.5190.00004
ORF1ab/nsp148D48DgaTgaC11B.1.1.5190.00004
ORF1ab/nsp148D48DgaTgaC11B.1.1.630.000386
ORF1ab/nsp148D48del2gATg--11B.1.1.70.000001
ORF1ab/nsp148D48HGatCat11B.1.1.70.000001
ORF1ab/nsp148D48del1gaTga-11B.1.1.70.000001
ORF1ab/nsp148D48NGatAat11B.1.1600.000031
ORF1ab/nsp148D48GgAtgGt11B.1.1600.000031
ORF1ab/nsp148D48DgaTgaC11B.1.160.300.002976
ORF1ab/nsp148D48GgAtgGt11B.1.160.330.004425
ORF1ab/nsp148D48NGatAat11B.1.1770.000013
ORF1ab/nsp148D48delGAT---11B.1.177.110.001698
ORF1ab/nsp148D48EgaTgaA11B.1.177.110.001698
ORF1ab/nsp148D48YGatTat11B.1.177.120.000152
ORF1ab/nsp148D48delGAT---11B.1.177.160.000664
ORF1ab/nsp148D48NGatAat11B.1.177.500.004695
ORF1ab/nsp148D48delGAT---11B.1.177.510.004566
ORF1ab/nsp148D48AgAtgCt11B.1.177.540.000606
ORF1ab/nsp148D48GgAtgGt11B.1.177.690.001484
ORF1ab/nsp148D48NGatAat11B.1.177.730.000566
ORF1ab/nsp148D48delGAT---11B.1.177.870.000728
ORF1ab/nsp148D48delGAT---11B.1.177.90.001332
ORF1ab/nsp148D48delGAT---11B.1.1790.003759
ORF1ab/nsp148D48delGAT---11B.1.20.000009
ORF1ab/nsp148D48VgAtgTt11B.1.20.000009
ORF1ab/nsp148D48HGatCat11B.1.20.000009
ORF1ab/nsp148D48EgaTgaA11B.1.221.30.000833
ORF1ab/nsp148D48GgAtgGt11B.1.2290.009709
ORF1ab/nsp148D48EgaTgaG11B.1.2430.00007
ORF1ab/nsp148D48CGATTGC11B.1.2580.000067
ORF1ab/nsp148D48DgaTgaC11B.1.2580.000067
ORF1ab/nsp148D48YGatTat11B.1.3370.005587
ORF1ab/nsp148D48YGatTat11B.1.3510.00003
ORF1ab/nsp148D48DgaTgaC11B.1.360.000146
ORF1ab/nsp148D48YGatTat11B.1.4240.008065
ORF1ab/nsp148D48delGAT---11B.1.4290.000024
ORF1ab/nsp148D48NGatAat11B.1.438.10.000107
ORF1ab/nsp148D48NGatAat11B.1.4590.004082
ORF1ab/nsp148D48NGatAat11B.1.466.20.000391
ORF1ab/nsp148D48YGatTat11B.1.4870.019608
ORF1ab/nsp148D48GgAtgGt11B.1.5260.000024
ORF1ab/nsp148D48AgAtgCt11B.1.5260.000024
ORF1ab/nsp148D48NGatAat11B.1.5260.000024
ORF1ab/nsp148D48TGATACA11B.1.5380.008065
ORF1ab/nsp148D48EgaTgaA11B.1.5960.000087
ORF1ab/nsp148D48DgaTgaC11B.1.5960.000087
ORF1ab/nsp148D48YGatTat11B.1.5960.000087
ORF1ab/nsp148D48YGatTat11B.1.5990.00365
ORF1ab/nsp148D48VgAtgTt11B.1.6090.000479
ORF1ab/nsp148D48VgAtgTt11B.1.617.20.000004
ORF1ab/nsp148D48EgaTgaA11B.1.6370.000073
ORF1ab/nsp148D48delGAT---11C.350.000774
ORF1ab/nsp148D48YGatTat11D.20.000075
ORF1ab/nsp148D48EgaTgaG11D.20.000075
ORF1ab/nsp148D48NGatAat11P.10.000016
ORF1ab/nsp148D48GgAtgGt11P.10.000016
ORF1ab/nsp148D48DgaTgaC11P.10.000016
ORF1ab/nsp148D48DgaTgaC11P.1.120.000484
ORF1ab/nsp148D48NGatAat11P.1.140.000048
ORF1ab/nsp148D48YGatTat11P.1.150.000232
ORF1ab/nsp148D48YGatTat11P.20.000187
ORF1ab/nsp148D48NGatAat11Q.10.000126
ORF1ab/nsp148D48NGatAat11Q.30.000145
ORF1ab/nsp148D48YGatTat11R.10.00009