CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 48 | D48G | D48G | nonsyn | gAt | gGt | 1592 | 1592 | 1 | 407-409 |
ORF1ab/nsp1 | 48 | D48N | D48N | nonsyn | Gat | Aat | 1026 | 1026 | 1 | 407-409 |
ORF1ab/nsp1 | 48 | D48D | D48D | syn | gaT | gaC | 484 | 484 | 1 | 407-409 |
ORF1ab/nsp1 | 48 | D48V | D48V | nonsyn | gAt | gTt | 322 | 322 | 1 | 407-409 |
ORF1ab/nsp1 | 48 | D48Y | D48Y | nonsyn | Gat | Tat | 226 | 226 | 1 | 407-409 |
ORF1ab/nsp1 | 48 | D48E | D48E | nonsyn | gaT | gaA | 116 | 75 | 0.646552 | 407-409 |
ORF1ab/nsp1 | 48 | D48E | D48E | nonsyn | gaT | gaG | 116 | 41 | 0.353448 | 407-409 |
ORF1ab/nsp1 | 48 | D48del | D48del | del | GAT | --- | 98 | 98 | 1 | 407-409 |
ORF1ab/nsp1 | 48 | D48A | D48A | nonsyn | gAt | gCt | 57 | 57 | 1 | 407-409 |
ORF1ab/nsp1 | 48 | D48H | D48H | nonsyn | Gat | Cat | 4 | 4 | 1 | 407-409 |
ORF1ab/nsp1 | 48 | D48T | D48T | nonsyn | GAT | ACA | 3 | 3 | 1 | 407-409 |
ORF1ab/nsp1 | 48 | D48del1 | D48del1 | del | Gat | -at | 2 | 1 | 0.5 | 407-409 |
ORF1ab/nsp1 | 48 | D48del1 | D48del1 | del | gaT | ga- | 2 | 1 | 0.5 | 407-409 |
ORF1ab/nsp1 | 48 | D48C | D48C | nonsyn | GAT | TGC | 1 | 1 | 1 | 407-409 |
ORF1ab/nsp1 | 48 | D48del2 | D48del2 | del | gAT | g-- | 1 | 1 | 1 | 407-409 |
ORF1ab/nsp1 | 48 | D48L | D48L | nonsyn | GAT | TTG | 1 | 1 | 1 | 407-409 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 1592 | 1592 | All | 0.000304 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 1210 | 1210 | B.1.177.17 | 0.993432 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1026 | 1026 | All | 0.000196 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 703 | 703 | B.1.1.7 | 0.000629 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 484 | 484 | All | 0.000093 |
ORF1ab/nsp1 | 48 | D48V | gAt | gTt | 322 | 322 | All | 0.000062 |
ORF1ab/nsp1 | 48 | D48V | gAt | gTt | 317 | 317 | AY.117 | 0.026792 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 226 | 226 | All | 0.000043 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 75 | 116 | All | 0.000014 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 41 | 116 | All | 0.000008 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 110 | 110 | AY.103 | 0.000683 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 106 | 106 | B.1.177 | 0.001396 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 98 | 98 | All | 0.000019 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 95 | 95 | AY.25 | 0.000571 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 89 | 89 | B.1.1.7 | 0.00008 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 88 | 88 | AY.39 | 0.002175 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 67 | 67 | B.1.1.7 | 0.00006 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 61 | 61 | B.1.351 | 0.001813 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 58 | 58 | B.1.1.7 | 0.000052 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 57 | 57 | All | 0.000011 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 57 | 57 | B.1.517 | 0.024338 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 46 | 46 | AY.4 | 0.000072 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 34 | 34 | AY.4 | 0.000053 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 28 | 28 | AY.4.2 | 0.000607 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 24 | 27 | AY.43 | 0.000106 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 3 | 27 | AY.43 | 0.000013 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 27 | 27 | B.1.1.7 | 0.000024 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 26 | 26 | B.1.617.2 | 0.000098 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 22 | 22 | AY.44 | 0.000134 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 20 | 20 | B.1.617.2 | 0.000075 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 17 | 18 | AY.98.1 | 0.000823 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 1 | 18 | AY.98.1 | 0.000048 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 16 | 16 | AY.43 | 0.000071 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 16 | 16 | B.1.1.523 | 0.025 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 15 | 15 | AY.44 | 0.000091 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 14 | 14 | AY.20 | 0.000544 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 12 | 13 | B.1.1.7 | 0.000011 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 1 | 13 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 11 | 11 | AY.29 | 0.000174 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 11 | 11 | B.1.177 | 0.000145 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 11 | 11 | B.1.258.14 | 0.010784 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 11 | 11 | B.1.311 | 0.00302 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 10 | 10 | AY.91 | 0.007305 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 9 | 9 | AY.113 | 0.001282 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 7 | 7 | B.1.36.29 | 0.003621 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 4 | 6 | B.1.617.2 | 0.000015 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 2 | 6 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 5 | 5 | B.1.1.228 | 0.015244 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp1 | 48 | D48H | Gat | Cat | 4 | 4 | All | 0.000001 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp1 | 48 | D48T | GAT | ACA | 3 | 3 | All | 0.000001 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 3 | 3 | Q.7 | 0.003333 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp1 | 48 | D48del1 | gaT | ga- | 1 | 2 | All | 0 |
ORF1ab/nsp1 | 48 | D48del1 | Gat | -at | 1 | 2 | All | 0 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp1 | 48 | D48H | Gat | Cat | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 2 | 2 | AY.4.1 | 0.001475 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 1 | 2 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 1 | 2 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 2 | 2 | B.1.36.2 | 0.021505 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 2 | 2 | B.1.473 | 0.038462 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 2 | 2 | B.1.597 | 0.009259 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp1 | 48 | D48C | GAT | TGC | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 48 | D48L | GAT | TTG | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 48 | D48del2 | gAT | g-- | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 48 | D48V | gAt | gTt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp1 | 48 | D48del1 | Gat | -at | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 48 | D48T | GAT | ACA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 48 | D48L | GAT | TTG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 1 | 1 | B.1.1.267 | 0.010101 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp1 | 48 | D48V | gAt | gTt | 1 | 1 | B.1.1.299 | 0.012195 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp1 | 48 | D48T | GAT | ACA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp1 | 48 | D48del2 | gAT | g-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 48 | D48H | Gat | Cat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 48 | D48del1 | gaT | ga- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 1 | 1 | B.1.160.33 | 0.004425 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 48 | D48V | gAt | gTt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 48 | D48H | Gat | Cat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 1 | 1 | B.1.229 | 0.009709 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp1 | 48 | D48C | GAT | TGC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | B.1.337 | 0.005587 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | B.1.424 | 0.008065 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | B.1.487 | 0.019608 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 48 | D48A | gAt | gCt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 48 | D48T | GAT | ACA | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp1 | 48 | D48V | gAt | gTt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp1 | 48 | D48V | gAt | gTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaA | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp1 | 48 | D48del | GAT | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 48 | D48E | gaT | gaG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 48 | D48G | gAt | gGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 48 | D48D | gaT | gaC | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp1 | 48 | D48N | Gat | Aat | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp1 | 48 | D48Y | Gat | Tat | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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