CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 45

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp1	45	H45H	H45H	syn	caT	caC	5524	5524	1	398-400
ORF1ab/nsp1	45	H45Y	H45Y	nonsyn	Cat	Tat	4042	4042	1	398-400
ORF1ab/nsp1	45	H45R	H45R	nonsyn	cAt	cGt	254	254	1	398-400
ORF1ab/nsp1	45	H45Q	H45Q	nonsyn	caT	caG	170	140	0.823529	398-400
ORF1ab/nsp1	45	H45Q	H45Q	nonsyn	caT	caA	170	30	0.176471	398-400
ORF1ab/nsp1	45	H45del	H45del	del	CAT	---	122	122	1	398-400
ORF1ab/nsp1	45	H45N	H45N	nonsyn	Cat	Aat	49	49	1	398-400
ORF1ab/nsp1	45	H45D	H45D	nonsyn	Cat	Gat	13	13	1	398-400
ORF1ab/nsp1	45	H45L	H45L	nonsyn	cAt	cTt	7	7	1	398-400
ORF1ab/nsp1	45	H45P	H45P	nonsyn	cAt	cCt	6	6	1	398-400
ORF1ab/nsp1	45	H45del1	H45del1	del	caT	ca-	5	4	0.8	398-400
ORF1ab/nsp1	45	H45del1	H45del1	del	Cat	-at	5	1	0.2	398-400
ORF1ab/nsp1	45	H45E	H45E	nonsyn	CaT	GaA	3	3	1	398-400
ORF1ab/nsp1	45	H45del2	H45del2	del	cAT	c--	3	2	0.666667	398-400
ORF1ab/nsp1	45	H45del2	H45del2	del	CAt	--t	3	1	0.333333	398-400
ORF1ab/nsp1	45	H45S	H45S	nonsyn	CAt	TCt	1	1	1	398-400
ORF1ab/nsp1	45	H45C	H45C	nonsyn	CAt	TGt	1	1	1	398-400
ORF1ab/nsp1	45	H45F	H45F	nonsyn	CAt	TTt	1	1	1	398-400

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp1	45	H45H	caT	caC	5524	5524	All	0.001057
ORF1ab/nsp1	45	H45Y	Cat	Tat	4042	4042	All	0.000773
ORF1ab/nsp1	45	H45H	caT	caC	2533	2533	AY.4	0.003942
ORF1ab/nsp1	45	H45H	caT	caC	2274	2274	B.1.1.7	0.002036
ORF1ab/nsp1	45	H45Y	Cat	Tat	1305	1305	B.1.1.7	0.001168
ORF1ab/nsp1	45	H45Y	Cat	Tat	485	485	AY.103	0.003011
ORF1ab/nsp1	45	H45Y	Cat	Tat	287	287	AY.4	0.000447
ORF1ab/nsp1	45	H45R	cAt	cGt	254	254	All	0.000049
ORF1ab/nsp1	45	H45H	caT	caC	179	179	B.1.617.2	0.000674
ORF1ab/nsp1	45	H45Y	Cat	Tat	177	177	B.1.617.2	0.000666
ORF1ab/nsp1	45	H45Q	caT	caG	140	170	All	0.000027
ORF1ab/nsp1	45	H45Q	caT	caA	30	170	All	0.000006
ORF1ab/nsp1	45	H45del	CAT	---	122	122	All	0.000023
ORF1ab/nsp1	45	H45Y	Cat	Tat	119	119	AY.44	0.000724
ORF1ab/nsp1	45	H45Y	Cat	Tat	108	108	B.1.177	0.001422
ORF1ab/nsp1	45	H45Y	Cat	Tat	98	98	AY.43	0.000434
ORF1ab/nsp1	45	H45R	cAt	cGt	83	83	AY.4	0.000129
ORF1ab/nsp1	45	H45Y	Cat	Tat	80	80	B.1.526	0.00188
ORF1ab/nsp1	45	H45Y	Cat	Tat	78	78	AY.120	0.0029
ORF1ab/nsp1	45	H45Y	Cat	Tat	77	77	B.1.1	0.001397
ORF1ab/nsp1	45	H45H	caT	caC	75	75	AY.85	0.032038
ORF1ab/nsp1	45	H45Q	caT	caG	70	70	B.1.1.222	0.01428
ORF1ab/nsp1	45	H45Y	Cat	Tat	56	56	AY.25	0.000337
ORF1ab/nsp1	45	H45H	caT	caC	52	52	AY.43	0.00023
ORF1ab/nsp1	45	H45Y	Cat	Tat	52	52	B.1.2	0.000458
ORF1ab/nsp1	45	H45Y	Cat	Tat	51	51	AY.3	0.000507
ORF1ab/nsp1	45	H45Y	Cat	Tat	50	50	B.1	0.000458
ORF1ab/nsp1	45	H45N	Cat	Aat	49	49	All	0.000009
ORF1ab/nsp1	45	H45Y	Cat	Tat	44	44	B.1.1.311	0.015759
ORF1ab/nsp1	45	H45Y	Cat	Tat	44	44	B.1.623	0.023605
ORF1ab/nsp1	45	H45R	cAt	cGt	40	40	B.1.1.7	0.000036
ORF1ab/nsp1	45	H45H	caT	caC	36	36	AY.102	0.000955
ORF1ab/nsp1	45	H45Y	Cat	Tat	35	35	AY.102	0.000928
ORF1ab/nsp1	45	H45Y	Cat	Tat	35	35	B.1.258	0.002329
ORF1ab/nsp1	45	H45R	cAt	cGt	30	30	AY.98	0.00237
ORF1ab/nsp1	45	H45Y	Cat	Tat	28	28	AY.98	0.002212
ORF1ab/nsp1	45	H45del	CAT	---	28	28	B.1.1.7	0.000025
ORF1ab/nsp1	45	H45H	caT	caC	28	28	B.1.2	0.000247
ORF1ab/nsp1	45	H45Y	Cat	Tat	26	26	AY.20	0.00101
ORF1ab/nsp1	45	H45Y	Cat	Tat	25	25	AY.29.1	0.005513
ORF1ab/nsp1	45	H45Y	Cat	Tat	25	25	AY.5	0.000516
ORF1ab/nsp1	45	H45Q	caT	caG	21	24	B.1.1.7	0.000019
ORF1ab/nsp1	45	H45Q	caT	caA	3	24	B.1.1.7	0.000003
ORF1ab/nsp1	45	H45H	caT	caC	23	23	AY.25	0.000138
ORF1ab/nsp1	45	H45Q	caT	caG	23	23	AY.26	0.000651
ORF1ab/nsp1	45	H45H	caT	caC	22	22	B.1.177	0.00029
ORF1ab/nsp1	45	H45Y	Cat	Tat	21	21	AY.119	0.000741
ORF1ab/nsp1	45	H45Y	Cat	Tat	21	21	B.1.596	0.00183
ORF1ab/nsp1	45	H45Y	Cat	Tat	20	20	A.5	0.038462
ORF1ab/nsp1	45	H45Y	Cat	Tat	20	20	AY.50	0.015987
ORF1ab/nsp1	45	H45Y	Cat	Tat	20	20	B.1.1.519	0.000794
ORF1ab/nsp1	45	H45Y	Cat	Tat	20	20	B.1.637	0.001461
ORF1ab/nsp1	45	H45Y	Cat	Tat	19	19	B.1.219	0.179245
ORF1ab/nsp1	45	H45Y	Cat	Tat	18	18	AY.29	0.000284
ORF1ab/nsp1	45	H45Y	Cat	Tat	18	18	B.1.177.81	0.003408
ORF1ab/nsp1	45	H45H	caT	caC	17	17	AJ.1	0.772727
ORF1ab/nsp1	45	H45H	caT	caC	17	17	AY.103	0.000106
ORF1ab/nsp1	45	H45Y	Cat	Tat	17	17	AY.26	0.000481
ORF1ab/nsp1	45	H45H	caT	caC	17	17	AY.3	0.000169
ORF1ab/nsp1	45	H45Y	Cat	Tat	16	16	AY.4.2	0.000347
ORF1ab/nsp1	45	H45Y	Cat	Tat	16	16	AY.4.2.1	0.002384
ORF1ab/nsp1	45	H45H	caT	caC	16	16	R.1	0.00144
ORF1ab/nsp1	45	H45H	caT	caC	14	14	AY.34	0.001358
ORF1ab/nsp1	45	H45del	CAT	---	14	14	AY.4	0.000022
ORF1ab/nsp1	45	H45Y	Cat	Tat	14	14	B.1.240	0.003018
ORF1ab/nsp1	45	H45Y	Cat	Tat	14	14	B.1.351	0.000416
ORF1ab/nsp1	45	H45N	Cat	Aat	14	14	B.1.617.2	0.000053
ORF1ab/nsp1	45	H45Y	Cat	Tat	14	14	P.1	0.000221
ORF1ab/nsp1	45	H45Y	Cat	Tat	13	13	A.27	0.021523
ORF1ab/nsp1	45	H45D	Cat	Gat	13	13	All	0.000002
ORF1ab/nsp1	45	H45Y	Cat	Tat	13	13	AY.39	0.000321
ORF1ab/nsp1	45	H45H	caT	caC	13	13	B.1	0.000119
ORF1ab/nsp1	45	H45Y	Cat	Tat	12	12	AY.121	0.001624
ORF1ab/nsp1	45	H45Y	Cat	Tat	12	12	B.1.429	0.000282
ORF1ab/nsp1	45	H45Q	caT	caA	7	11	AY.4	0.000011
ORF1ab/nsp1	45	H45Q	caT	caG	4	11	AY.4	0.000006
ORF1ab/nsp1	45	H45R	cAt	cGt	11	11	B.1.2	0.000097
ORF1ab/nsp1	45	H45Q	caT	caG	10	10	AY.3	0.000099
ORF1ab/nsp1	45	H45H	caT	caC	10	10	AY.77	0.011274
ORF1ab/nsp1	45	H45Y	Cat	Tat	9	9	AY.100	0.000414
ORF1ab/nsp1	45	H45H	caT	caC	9	9	AY.20	0.00035
ORF1ab/nsp1	45	H45Y	Cat	Tat	9	9	AY.23	0.000628
ORF1ab/nsp1	45	H45Y	Cat	Tat	9	9	AY.3.1	0.000767
ORF1ab/nsp1	45	H45H	caT	caC	9	9	AY.38	0.004493
ORF1ab/nsp1	45	H45R	cAt	cGt	9	9	AY.44	0.000055
ORF1ab/nsp1	45	H45H	caT	caC	9	9	AY.9.2	0.000331
ORF1ab/nsp1	45	H45Y	Cat	Tat	9	9	B.1.427	0.000454
ORF1ab/nsp1	45	H45R	cAt	cGt	9	9	B.1.429	0.000212
ORF1ab/nsp1	45	H45Y	Cat	Tat	9	9	P.1.14	0.00043
ORF1ab/nsp1	45	H45Y	Cat	Tat	8	8	AY.120.1	0.002568
ORF1ab/nsp1	45	H45Y	Cat	Tat	8	8	AY.33	0.000534
ORF1ab/nsp1	45	H45H	caT	caC	8	8	AY.39	0.000198
ORF1ab/nsp1	45	H45Y	Cat	Tat	8	8	AY.42	0.000322
ORF1ab/nsp1	45	H45Y	Cat	Tat	8	8	AY.98.1	0.000387
ORF1ab/nsp1	45	H45Y	Cat	Tat	8	8	B.1.160	0.00025
ORF1ab/nsp1	45	H45del	CAT	---	8	8	B.1.177	0.000105
ORF1ab/nsp1	45	H45Y	Cat	Tat	8	8	B.1.177.86	0.001468
ORF1ab/nsp1	45	H45Y	Cat	Tat	8	8	B.1.206	0.006525
ORF1ab/nsp1	45	H45Y	Cat	Tat	8	8	B.1.517	0.003416
ORF1ab/nsp1	45	H45H	caT	caC	8	8	P.1	0.000126
ORF1ab/nsp1	45	H45L	cAt	cTt	7	7	All	0.000001
ORF1ab/nsp1	45	H45H	caT	caC	7	7	AY.100	0.000322
ORF1ab/nsp1	45	H45H	caT	caC	7	7	AY.29	0.00011
ORF1ab/nsp1	45	H45N	Cat	Aat	7	7	AY.35	0.001631
ORF1ab/nsp1	45	H45N	Cat	Aat	7	7	AY.4	0.000011
ORF1ab/nsp1	45	H45H	caT	caC	7	7	AY.44	0.000043
ORF1ab/nsp1	45	H45Y	Cat	Tat	7	7	AY.54	0.000667
ORF1ab/nsp1	45	H45Y	Cat	Tat	7	7	AY.9	0.000473
ORF1ab/nsp1	45	H45R	cAt	cGt	7	7	B.1.617.2	0.000026
ORF1ab/nsp1	45	H45Y	Cat	Tat	7	7	Q.1	0.000884
ORF1ab/nsp1	45	H45P	cAt	cCt	6	6	All	0.000001
ORF1ab/nsp1	45	H45H	caT	caC	6	6	AY.14	0.000528
ORF1ab/nsp1	45	H45H	caT	caC	6	6	AY.30	0.002374
ORF1ab/nsp1	45	H45Y	Cat	Tat	6	6	AY.39.1	0.000238
ORF1ab/nsp1	45	H45del	CAT	---	6	6	AY.43	0.000027
ORF1ab/nsp1	45	H45Y	Cat	Tat	6	6	AY.47	0.000187
ORF1ab/nsp1	45	H45Y	Cat	Tat	6	6	AY.85	0.002563
ORF1ab/nsp1	45	H45Y	Cat	Tat	6	6	AY.99.2	0.000553
ORF1ab/nsp1	45	H45Y	Cat	Tat	6	6	B.1.1.284	0.000644
ORF1ab/nsp1	45	H45N	Cat	Aat	6	6	B.1.1.7	0.000005
ORF1ab/nsp1	45	H45Y	Cat	Tat	6	6	B.1.234	0.000792
ORF1ab/nsp1	45	H45Y	Cat	Tat	6	6	B.1.258.17	0.000624
ORF1ab/nsp1	45	H45Y	Cat	Tat	6	6	B.1.438.2	0.115385
ORF1ab/nsp1	45	H45R	cAt	cGt	6	6	B.1.603	0.06383
ORF1ab/nsp1	45	H45Q	caT	caA	5	6	B.1.617.2	0.000019
ORF1ab/nsp1	45	H45Q	caT	caG	1	6	B.1.617.2	0.000004
ORF1ab/nsp1	45	H45H	caT	caC	6	6	C.37	0.000696
ORF1ab/nsp1	45	H45Y	Cat	Tat	6	6	P.2	0.00112
ORF1ab/nsp1	45	H45Y	Cat	Tat	5	5	A.21	0.01385
ORF1ab/nsp1	45	H45del1	caT	ca-	4	5	All	0.000001
ORF1ab/nsp1	45	H45del1	Cat	-at	1	5	All	0
ORF1ab/nsp1	45	H45H	caT	caC	5	5	AY.114	0.001156
ORF1ab/nsp1	45	H45H	caT	caC	5	5	AY.23	0.000349
ORF1ab/nsp1	45	H45del	CAT	---	5	5	AY.23	0.000349
ORF1ab/nsp1	45	H45Y	Cat	Tat	5	5	AY.27	0.000324
ORF1ab/nsp1	45	H45N	Cat	Aat	5	5	AY.37	0.00158
ORF1ab/nsp1	45	H45H	caT	caC	5	5	AY.4.2	0.000108
ORF1ab/nsp1	45	H45H	caT	caC	5	5	AY.42	0.000201
ORF1ab/nsp1	45	H45Y	Cat	Tat	5	5	AY.46.4	0.000823
ORF1ab/nsp1	45	H45H	caT	caC	5	5	AY.46.6	0.000361
ORF1ab/nsp1	45	H45R	cAt	cGt	5	5	AY.98.1	0.000242
ORF1ab/nsp1	45	H45Y	Cat	Tat	5	5	B.1.221	0.000355
ORF1ab/nsp1	45	H45Y	Cat	Tat	5	5	B.1.400	0.002145
ORF1ab/nsp1	45	H45Y	Cat	Tat	5	5	Q.8	0.000825
ORF1ab/nsp1	45	H45R	cAt	cGt	4	4	AY.103	0.000025
ORF1ab/nsp1	45	H45Y	Cat	Tat	4	4	AY.118	0.000251
ORF1ab/nsp1	45	H45R	cAt	cGt	4	4	AY.25	0.000024
ORF1ab/nsp1	45	H45R	cAt	cGt	4	4	AY.39	0.000099
ORF1ab/nsp1	45	H45R	cAt	cGt	4	4	AY.43	0.000018
ORF1ab/nsp1	45	H45Y	Cat	Tat	4	4	AY.46	0.000416
ORF1ab/nsp1	45	H45Y	Cat	Tat	4	4	AY.9.1	0.000335
ORF1ab/nsp1	45	H45Y	Cat	Tat	4	4	B.1.1.174	0.013514
ORF1ab/nsp1	45	H45del	CAT	---	4	4	B.1.1.33	0.001684
ORF1ab/nsp1	45	H45del	CAT	---	4	4	B.1.1.348	0.003185
ORF1ab/nsp1	45	H45Y	Cat	Tat	4	4	B.1.177.54	0.002426
ORF1ab/nsp1	45	H45H	caT	caC	4	4	B.1.243	0.000278
ORF1ab/nsp1	45	H45H	caT	caC	4	4	B.1.351	0.000119
ORF1ab/nsp1	45	H45H	caT	caC	4	4	B.1.596	0.000349
ORF1ab/nsp1	45	H45H	caT	caC	4	4	B.1.621	0.000354
ORF1ab/nsp1	45	H45Y	Cat	Tat	4	4	C.37	0.000464
ORF1ab/nsp1	45	H45E	CaT	GaA	3	3	All	0.000001
ORF1ab/nsp1	45	H45del2	cAT	c--	2	3	All	0
ORF1ab/nsp1	45	H45del2	CAt	--t	1	3	All	0
ORF1ab/nsp1	45	H45D	Cat	Gat	3	3	AY.103	0.000019
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	AY.111	0.000549
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	AY.116	0.00086
ORF1ab/nsp1	45	H45H	caT	caC	3	3	AY.116	0.00086
ORF1ab/nsp1	45	H45H	caT	caC	3	3	AY.119	0.000106
ORF1ab/nsp1	45	H45H	caT	caC	3	3	AY.120	0.000112
ORF1ab/nsp1	45	H45R	cAt	cGt	3	3	AY.120	0.000112
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	AY.120.2	0.003856
ORF1ab/nsp1	45	H45del	CAT	---	3	3	AY.25	0.000018
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	AY.34	0.000291
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	AY.36	0.000445
ORF1ab/nsp1	45	H45D	Cat	Gat	3	3	AY.39	0.000074
ORF1ab/nsp1	45	H45del	CAT	---	3	3	AY.4.5	0.000322
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	AY.61	0.000314
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	AY.75	0.000168
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	AY.87	0.002498
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	AY.9.2	0.00011
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	B	0.000383
ORF1ab/nsp1	45	H45Q	caT	caG	2	3	B.1	0.000018
ORF1ab/nsp1	45	H45Q	caT	caA	1	3	B.1	0.000009
ORF1ab/nsp1	45	H45Q	caT	caA	2	3	B.1.1	0.000036
ORF1ab/nsp1	45	H45Q	caT	caG	1	3	B.1.1	0.000018
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	B.1.1.265	0.009464
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	B.1.1.294	0.003797
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	B.1.1.420	0.003018
ORF1ab/nsp1	45	H45del1	caT	ca-	3	3	B.1.1.7	0.000003
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	B.1.160.24	0.013274
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	B.1.177.4	0.000633
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	B.1.243	0.000209
ORF1ab/nsp1	45	H45R	cAt	cGt	3	3	B.1.258	0.0002
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	B.1.369	0.000856
ORF1ab/nsp1	45	H45H	caT	caC	3	3	B.1.429	0.000071
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	B.1.595	0.000783
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	B.1.628	0.001057
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	P.1.1	0.000953
ORF1ab/nsp1	45	H45H	caT	caC	3	3	P.1.15	0.000697
ORF1ab/nsp1	45	H45Y	Cat	Tat	3	3	P.1.16	0.001122
ORF1ab/nsp1	45	H45Q	caT	caA	3	3	Q.7	0.003333
ORF1ab/nsp1	45	H45R	cAt	cGt	3	3	R.1	0.00027
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	A.1	0.000564
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	AU.1	0.002532
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	AY.113	0.000285
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	AY.114	0.000462
ORF1ab/nsp1	45	H45del	CAT	---	2	2	AY.120	0.000074
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	AY.16.1	0.00094
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	AY.21	0.003795
ORF1ab/nsp1	45	H45H	caT	caC	2	2	AY.26	0.000057
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	AY.32	0.001065
ORF1ab/nsp1	45	H45H	caT	caC	2	2	AY.39.1	0.000079
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	AY.4.4	0.000818
ORF1ab/nsp1	45	H45N	Cat	Aat	2	2	AY.43	0.000009
ORF1ab/nsp1	45	H45Q	caT	caA	2	2	AY.44	0.000012
ORF1ab/nsp1	45	H45H	caT	caC	2	2	AY.45	0.000243
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	AY.46.6	0.000144
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	AY.5.4	0.000553
ORF1ab/nsp1	45	H45H	caT	caC	2	2	AY.59	0.001059
ORF1ab/nsp1	45	H45H	caT	caC	2	2	AY.6	0.000082
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	AY.6	0.000082
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	AY.65	0.001066
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	AY.71	0.00095
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	AY.78	0.003082
ORF1ab/nsp1	45	H45L	cAt	cTt	2	2	AY.99.2	0.000184
ORF1ab/nsp1	45	H45R	cAt	cGt	2	2	B.1	0.000018
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	B.1.1.1	0.000653
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	B.1.1.214	0.000111
ORF1ab/nsp1	45	H45H	caT	caC	2	2	B.1.1.216	0.001781
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	B.1.1.28	0.000622
ORF1ab/nsp1	45	H45H	caT	caC	2	2	B.1.1.311	0.000716
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	B.1.1.318	0.000604
ORF1ab/nsp1	45	H45R	cAt	cGt	2	2	B.1.1.398	0.006452
ORF1ab/nsp1	45	H45H	caT	caC	2	2	B.1.1.526	0.007092
ORF1ab/nsp1	45	H45H	caT	caC	2	2	B.1.160	0.000062
ORF1ab/nsp1	45	H45R	cAt	cGt	2	2	B.1.177	0.000026
ORF1ab/nsp1	45	H45R	cAt	cGt	2	2	B.1.177.26	0.013986
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	B.1.177.7	0.00033
ORF1ab/nsp1	45	H45Q	caT	caG	2	2	B.1.179	0.007519
ORF1ab/nsp1	45	H45H	caT	caC	2	2	B.1.221	0.000142
ORF1ab/nsp1	45	H45H	caT	caC	2	2	B.1.258	0.000133
ORF1ab/nsp1	45	H45H	caT	caC	2	2	B.1.279	0.001027
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	B.1.311	0.000549
ORF1ab/nsp1	45	H45del	CAT	---	2	2	B.1.36.17	0.000988
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	B.1.375	0.001639
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	B.1.380	0.013245
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	B.1.408	0.00738
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	B.1.564	0.000852
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	B.1.609	0.000959
ORF1ab/nsp1	45	H45del	CAT	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	B.1.621	0.000177
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	B.39	0.004662
ORF1ab/nsp1	45	H45del	CAT	---	2	2	N.4	0.008511
ORF1ab/nsp1	45	H45del	CAT	---	2	2	N.6	0.014184
ORF1ab/nsp1	45	H45Q	caT	caG	2	2	P.1	0.000032
ORF1ab/nsp1	45	H45R	cAt	cGt	2	2	P.1	0.000032
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	P.1.10	0.000539
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	P.1.17	0.000324
ORF1ab/nsp1	45	H45Y	Cat	Tat	2	2	P.1.7	0.000639
ORF1ab/nsp1	45	H45H	caT	caC	2	2	P.1.7	0.000639
ORF1ab/nsp1	45	H45del	CAT	---	2	2	P.2	0.000373
ORF1ab/nsp1	45	H45H	caT	caC	2	2	Q.3	0.00029
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	A	0.000387
ORF1ab/nsp1	45	H45del	CAT	---	1	1	A	0.000387
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	A.2	0.000662
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	A.2.2	0.001689
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AD.2	0.000219
ORF1ab/nsp1	45	H45S	CAt	TCt	1	1	All	0
ORF1ab/nsp1	45	H45C	CAt	TGt	1	1	All	0
ORF1ab/nsp1	45	H45F	CAt	TTt	1	1	All	0
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AT.1	0.005128
ORF1ab/nsp1	45	H45N	Cat	Aat	1	1	AY.1	0.000396
ORF1ab/nsp1	45	H45Q	caT	caA	1	1	AY.102	0.000027
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.105	0.000643
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.106	0.000335
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.107	0.000466
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	AY.110	0.000113
ORF1ab/nsp1	45	H45L	cAt	cTt	1	1	AY.114	0.000231
ORF1ab/nsp1	45	H45del	CAT	---	1	1	AY.116	0.000287
ORF1ab/nsp1	45	H45H	caT	caC	1	1	AY.117	0.000085
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.117	0.000085
ORF1ab/nsp1	45	H45H	caT	caC	1	1	AY.118	0.000063
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.12	0.000316
ORF1ab/nsp1	45	H45del	CAT	---	1	1	AY.12	0.000316
ORF1ab/nsp1	45	H45Q	caT	caA	1	1	AY.120	0.000037
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	AY.121	0.000135
ORF1ab/nsp1	45	H45H	caT	caC	1	1	AY.13	0.000161
ORF1ab/nsp1	45	H45N	Cat	Aat	1	1	AY.16.1	0.00047
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.2	0.000356
ORF1ab/nsp1	45	H45F	CAt	TTt	1	1	AY.23	0.00007
ORF1ab/nsp1	45	H45P	cAt	cCt	1	1	AY.23	0.00007
ORF1ab/nsp1	45	H45N	Cat	Aat	1	1	AY.26	0.000028
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	AY.29	0.000016
ORF1ab/nsp1	45	H45Q	caT	caG	1	1	AY.29	0.000016
ORF1ab/nsp1	45	H45D	Cat	Gat	1	1	AY.3	0.00001
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	AY.3	0.00001
ORF1ab/nsp1	45	H45del	CAT	---	1	1	AY.3	0.00001
ORF1ab/nsp1	45	H45H	caT	caC	1	1	AY.3.1	0.000085
ORF1ab/nsp1	45	H45P	cAt	cCt	1	1	AY.33	0.000067
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.34.1	0.00051
ORF1ab/nsp1	45	H45H	caT	caC	1	1	AY.36	0.000148
ORF1ab/nsp1	45	H45L	cAt	cTt	1	1	AY.37	0.000316
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.38	0.000499
ORF1ab/nsp1	45	H45del	CAT	---	1	1	AY.38	0.000499
ORF1ab/nsp1	45	H45N	Cat	Aat	1	1	AY.39	0.000025
ORF1ab/nsp1	45	H45L	cAt	cTt	1	1	AY.4	0.000002
ORF1ab/nsp1	45	H45del2	cAT	c--	1	1	AY.4	0.000002
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.4.3	0.000842
ORF1ab/nsp1	45	H45del	CAT	---	1	1	AY.4.4	0.000409
ORF1ab/nsp1	45	H45D	Cat	Gat	1	1	AY.4.5	0.000107
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.4.5	0.000107
ORF1ab/nsp1	45	H45H	caT	caC	1	1	AY.4.5	0.000107
ORF1ab/nsp1	45	H45H	caT	caC	1	1	AY.41	0.000294
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	AY.42	0.00004
ORF1ab/nsp1	45	H45S	CAt	TCt	1	1	AY.44	0.000006
ORF1ab/nsp1	45	H45D	Cat	Gat	1	1	AY.44	0.000006
ORF1ab/nsp1	45	H45P	cAt	cCt	1	1	AY.44	0.000006
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.45	0.000122
ORF1ab/nsp1	45	H45del	CAT	---	1	1	AY.45	0.000122
ORF1ab/nsp1	45	H45N	Cat	Aat	1	1	AY.45	0.000122
ORF1ab/nsp1	45	H45del	CAT	---	1	1	AY.46	0.000104
ORF1ab/nsp1	45	H45H	caT	caC	1	1	AY.46	0.000104
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.46.5	0.000198
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	AY.5	0.000021
ORF1ab/nsp1	45	H45del	CAT	---	1	1	AY.5	0.000021
ORF1ab/nsp1	45	H45H	caT	caC	1	1	AY.5	0.000021
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.5.3	0.000337
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.51	0.000909
ORF1ab/nsp1	45	H45H	caT	caC	1	1	AY.54	0.000095
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.55	0.000917
ORF1ab/nsp1	45	H45N	Cat	Aat	1	1	AY.6	0.000041
ORF1ab/nsp1	45	H45del	CAT	---	1	1	AY.6	0.000041
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.64	0.000595
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.68	0.000274
ORF1ab/nsp1	45	H45del	CAT	---	1	1	AY.68	0.000274
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.7.1	0.000113
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.70	0.000209
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.73	0.000665
ORF1ab/nsp1	45	H45H	caT	caC	1	1	AY.74	0.000116
ORF1ab/nsp1	45	H45del	CAT	---	1	1	AY.75.1	0.00018
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.75.1	0.00018
ORF1ab/nsp1	45	H45H	caT	caC	1	1	AY.9	0.000068
ORF1ab/nsp1	45	H45del	CAT	---	1	1	AY.9.1	0.000084
ORF1ab/nsp1	45	H45del	CAT	---	1	1	AY.9.2	0.000037
ORF1ab/nsp1	45	H45H	caT	caC	1	1	AY.90	0.000684
ORF1ab/nsp1	45	H45H	caT	caC	1	1	AY.92	0.000287
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	AY.92	0.000287
ORF1ab/nsp1	45	H45del	CAT	---	1	1	AY.95	0.000761
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	AY.99.2	0.000092
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1	0.000009
ORF1ab/nsp1	45	H45E	CaT	GaA	1	1	B.1	0.000009
ORF1ab/nsp1	45	H45N	Cat	Aat	1	1	B.1	0.000009
ORF1ab/nsp1	45	H45D	Cat	Gat	1	1	B.1	0.000009
ORF1ab/nsp1	45	H45H	caT	caC	1	1	B.1.1	0.000018
ORF1ab/nsp1	45	H45H	caT	caC	1	1	B.1.1.1	0.000327
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	B.1.1.1	0.000327
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	B.1.1.129	0.009174
ORF1ab/nsp1	45	H45H	caT	caC	1	1	B.1.1.164	0.005155
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.1.170	0.001247
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	B.1.1.194	0.00495
ORF1ab/nsp1	45	H45D	Cat	Gat	1	1	B.1.1.216	0.00089
ORF1ab/nsp1	45	H45H	caT	caC	1	1	B.1.1.222	0.000204
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	B.1.1.222	0.000204
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.1.222	0.000204
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.1.232	0.001815
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.1.243	0.004082
ORF1ab/nsp1	45	H45H	caT	caC	1	1	B.1.1.284	0.000107
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.1.291	0.000742
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.1.297	0.002237
ORF1ab/nsp1	45	H45H	caT	caC	1	1	B.1.1.3	0.008696
ORF1ab/nsp1	45	H45E	CaT	GaA	1	1	B.1.1.306	0.000438
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.1.311	0.000358
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.1.317	0.000412
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.1.322	0.008772
ORF1ab/nsp1	45	H45H	caT	caC	1	1	B.1.1.329	0.003846
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.1.33	0.000421
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	B.1.1.337	0.003597
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.1.37	0.000193
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.1.37	0.000193
ORF1ab/nsp1	45	H45Q	caT	caA	1	1	B.1.1.389	0.006061
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.1.39	0.00051
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.1.431	0.016129
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.1.433	0.001425
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.1.434	0.000349
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.1.448	0.002033
ORF1ab/nsp1	45	H45C	CAt	TGt	1	1	B.1.1.7	0.000001
ORF1ab/nsp1	45	H45del2	CAt	--t	1	1	B.1.1.7	0.000001
ORF1ab/nsp1	45	H45P	cAt	cCt	1	1	B.1.1.7	0.000001
ORF1ab/nsp1	45	H45D	Cat	Gat	1	1	B.1.1.7	0.000001
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.1.83	0.00271
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	B.1.110.3	0.000718
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.111	0.001175
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.160	0.000031
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.177.11	0.001698
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp1	45	H45H	caT	caC	1	1	B.1.177.31	0.011494
ORF1ab/nsp1	45	H45H	caT	caC	1	1	B.1.177.4	0.000211
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.177.4	0.000211
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.177.44	0.000519
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.177.51	0.004566
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.177.56	0.000668
ORF1ab/nsp1	45	H45del1	Cat	-at	1	1	B.1.177.57	0.000281
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.177.65	0.000665
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.177.69	0.001484
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.177.73	0.000566
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.177.75	0.001041
ORF1ab/nsp1	45	H45Q	caT	caA	1	1	B.1.177.75	0.001041
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.177.87	0.000728
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.177.9	0.001332
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.177.9	0.001332
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.179	0.003759
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.190	0.01
ORF1ab/nsp1	45	H45D	Cat	Gat	1	1	B.1.2	0.000009
ORF1ab/nsp1	45	H45Q	caT	caG	1	1	B.1.2	0.000009
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.2	0.000009
ORF1ab/nsp1	45	H45Q	caT	caA	1	1	B.1.221	0.000071
ORF1ab/nsp1	45	H45H	caT	caC	1	1	B.1.232	0.000537
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.232	0.000537
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.241	0.000812
ORF1ab/nsp1	45	H45N	Cat	Aat	1	1	B.1.258	0.000067
ORF1ab/nsp1	45	H45P	cAt	cCt	1	1	B.1.258	0.000067
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.258.11	0.000396
ORF1ab/nsp1	45	H45H	caT	caC	1	1	B.1.258.17	0.000104
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.279	0.000514
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.284	0.013158
ORF1ab/nsp1	45	H45H	caT	caC	1	1	B.1.3	0.002618
ORF1ab/nsp1	45	H45H	caT	caC	1	1	B.1.320	0.001245
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.320	0.001245
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.346	0.001311
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	B.1.351	0.00003
ORF1ab/nsp1	45	H45H	caT	caC	1	1	B.1.351.3	0.000876
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	B.1.351.3	0.000876
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.36	0.000146
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.36.31	0.001751
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	B.1.36.37	0.002778
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.36.7	0.004
ORF1ab/nsp1	45	H45P	cAt	cCt	1	1	B.1.398	0.002976
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	B.1.399	0.001934
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.422	0.000812
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.427	0.00005
ORF1ab/nsp1	45	H45H	caT	caC	1	1	B.1.427	0.00005
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.428	0.00102
ORF1ab/nsp1	45	H45del	CAT	---	1	1	B.1.429	0.000024
ORF1ab/nsp1	45	H45Q	caT	caA	1	1	B.1.429	0.000024
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.433	0.003195
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.438.1	0.000107
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.452	0.013699
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.466.2	0.000391
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	B.1.468	0.005714
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.499	0.00105
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.517.1	0.005263
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.525	0.000113
ORF1ab/nsp1	45	H45Q	caT	caG	1	1	B.1.526	0.000024
ORF1ab/nsp1	45	H45E	CaT	GaA	1	1	B.1.538	0.008065
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.556	0.007519
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.564.1	0.001577
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.574	0.002151
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.585	0.027778
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.594	0.03125
ORF1ab/nsp1	45	H45L	cAt	cTt	1	1	B.1.595	0.000261
ORF1ab/nsp1	45	H45H	caT	caC	1	1	B.1.617.1	0.000129
ORF1ab/nsp1	45	H45del2	cAT	c--	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	45	H45del1	caT	ca-	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.619	0.000871
ORF1ab/nsp1	45	H45Q	caT	caG	1	1	B.1.621	0.000089
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	B.1.621.1	0.000506
ORF1ab/nsp1	45	H45H	caT	caC	1	1	B.6.6	0.000889
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	C.1	0.002392
ORF1ab/nsp1	45	H45del	CAT	---	1	1	C.35	0.000774
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	D.2	0.000075
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	N.8	0.03125
ORF1ab/nsp1	45	H45L	cAt	cTt	1	1	P.1	0.000016
ORF1ab/nsp1	45	H45R	cAt	cGt	1	1	P.1.17	0.000162
ORF1ab/nsp1	45	H45H	caT	caC	1	1	Q.1	0.000126
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	Q.2	0.000613
ORF1ab/nsp1	45	H45Q	caT	caA	1	1	Q.4	0.000455
ORF1ab/nsp1	45	H45Y	Cat	Tat	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.