CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 37 & Codon = gaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp137E37DE37DnonsyngaGgaT563755890.991485374-376

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp137E37DgaGgaT55895637All0.001069
ORF1ab/nsp137E37DgaGgaT13501350B.1.2580.089838
ORF1ab/nsp137E37DgaGgaT927927B.1.1.3330.997847
ORF1ab/nsp137E37DgaGgaT434466B.1.1.70.000389
ORF1ab/nsp137E37DgaGgaT347348AY.40.00054
ORF1ab/nsp137E37DgaGgaT210210B.1.617.20.000791
ORF1ab/nsp137E37DgaGgaT156157B.1.3510.004637
ORF1ab/nsp137E37DgaGgaT142142P.10.002237
ORF1ab/nsp137E37DgaGgaT119119AY.430.000527
ORF1ab/nsp137E37DgaGgaT110110AY.250.000662
ORF1ab/nsp137E37DgaGgaT108108AY.1030.000671
ORF1ab/nsp137E37DgaGgaT101101AY.330.006745
ORF1ab/nsp137E37DgaGgaT101101B.1.5750.030643
ORF1ab/nsp137E37DgaGgaT9090AY.60.003702
ORF1ab/nsp137E37DgaGgaT7676AY.4.20.001648
ORF1ab/nsp137E37DgaGgaT7373AY.140.006425
ORF1ab/nsp137E37DgaGgaT7070B.1.5950.018267
ORF1ab/nsp137E37DgaGgaT6767B.1.20.00059
ORF1ab/nsp137E37DgaGgaT5959B.10.00054
ORF1ab/nsp137E37DgaGgaT5050AY.1210.006766
ORF1ab/nsp137E37DgaGgaT3939AY.1020.001034
ORF1ab/nsp137E37DgaGgaT3939AY.440.000237
ORF1ab/nsp137E37DgaGgaT3139B.1.10.000562
ORF1ab/nsp137E37DgaGgaT3434AY.1000.001564
ORF1ab/nsp137E37DgaGgaT3333B.1.3980.098214
ORF1ab/nsp137E37DgaGgaT3131B.1.4290.000729
ORF1ab/nsp137E37DgaGgaT2828AY.270.001812
ORF1ab/nsp137E37DgaGgaT2527AY.30.000249
ORF1ab/nsp137E37DgaGgaT2424AE.60.923077
ORF1ab/nsp137E37DgaGgaT2323B.1.2340.003035
ORF1ab/nsp137E37DgaGgaT2222B.1.177.870.016012
ORF1ab/nsp137E37DgaGgaT2222P.1.140.001052
ORF1ab/nsp137E37DgaGgaT2121AY.260.000595
ORF1ab/nsp137E37DgaGgaT2121B.1.1.5190.000834
ORF1ab/nsp137E37DgaGgaT2020AY.640.011905
ORF1ab/nsp137E37DgaGgaT2020B.1.360.002918
ORF1ab/nsp137E37DgaGgaT1818AY.290.000284
ORF1ab/nsp137E37DgaGgaT1818B.1.3960.012703
ORF1ab/nsp137E37DgaGgaT1414AY.1180.000877
ORF1ab/nsp137E37DgaGgaT1414AY.200.000544
ORF1ab/nsp137E37DgaGgaT1414AY.750.000784
ORF1ab/nsp137E37DgaGgaT1414B.1.258.220.037333
ORF1ab/nsp137E37DgaGgaT1414B.1.5820.006869
ORF1ab/nsp137E37DgaGgaT1313B.1.1600.000405
ORF1ab/nsp137E37DgaGgaT1111AY.390.000272
ORF1ab/nsp137E37DgaGgaT1111AY.450.001339
ORF1ab/nsp137E37DgaGgaT1111B.1.6210.000974
ORF1ab/nsp137E37DgaGgaT1010AY.610.001048
ORF1ab/nsp137E37DgaGgaT1010AY.9.20.000367
ORF1ab/nsp137E37DgaGgaT99AY.50.000186
ORF1ab/nsp137E37DgaGgaT99AY.540.000858
ORF1ab/nsp137E37DgaGgaT88B.1.1770.000105
ORF1ab/nsp137E37DgaGgaT88B.1.2400.001725
ORF1ab/nsp137E37DgaGgaT88B.1.3110.002197
ORF1ab/nsp137E37DgaGgaT88C.370.000929
ORF1ab/nsp137E37DgaGgaT77AY.1190.000247
ORF1ab/nsp137E37DgaGgaT77AY.46.60.000505
ORF1ab/nsp137E37DgaGgaT77AY.9.10.000586
ORF1ab/nsp137E37DgaGgaT77B.1.177.560.004673
ORF1ab/nsp137E37DgaGgaT77B.1.3560.01209
ORF1ab/nsp137E37DgaGgaT77B.1.5260.000165
ORF1ab/nsp137E37DgaGgaT66AY.1140.001387
ORF1ab/nsp137E37DgaGgaT66AY.116.10.001869
ORF1ab/nsp137E37DgaGgaT66AY.420.000241
ORF1ab/nsp137E37DgaGgaT66AY.5.40.00166
ORF1ab/nsp137E37DgaGgaT66AY.7.10.000676
ORF1ab/nsp137E37DgaGgaT66B.1.1.2770.004552
ORF1ab/nsp137E37DgaGgaT66B.1.617.10.000774
ORF1ab/nsp137E37DgaGgaT46D.20.0003
ORF1ab/nsp137E37DgaGgaT55AY.1010.002452
ORF1ab/nsp137E37DgaGgaT55AY.230.000349
ORF1ab/nsp137E37DgaGgaT55AY.460.00052
ORF1ab/nsp137E37DgaGgaT55AY.470.000156
ORF1ab/nsp137E37DgaGgaT55AY.75.10.000902
ORF1ab/nsp137E37DgaGgaT55B.1.1.1890.007564
ORF1ab/nsp137E37DgaGgaT55B.1.1.280.001556
ORF1ab/nsp137E37DgaGgaT55B.1.1.3980.016129
ORF1ab/nsp137E37DgaGgaT55B.1.3690.001426
ORF1ab/nsp137E37DgaGgaT55B.1.5990.018248
ORF1ab/nsp137E37DgaGgaT44AY.1090.002959
ORF1ab/nsp137E37DgaGgaT44B.1.177.510.018265
ORF1ab/nsp137E37DgaGgaT44B.1.177.860.000734
ORF1ab/nsp137E37DgaGgaT44B.1.22.10.125
ORF1ab/nsp137E37DgaGgaT44B.1.258.140.003922
ORF1ab/nsp137E37DgaGgaT44B.1.6120.01061
ORF1ab/nsp137E37DgaGgaT33AE.80.001467
ORF1ab/nsp137E37DgaGgaT33AY.360.000445
ORF1ab/nsp137E37DgaGgaT33AY.910.002191
ORF1ab/nsp137E37DgaGgaT33AY.980.000237
ORF1ab/nsp137E37DgaGgaT33B.1.1.10.00098
ORF1ab/nsp137E37DgaGgaT33B.1.2430.000209
ORF1ab/nsp137E37DgaGgaT33B.1.36.160.004274
ORF1ab/nsp137E37DgaGgaT33B.1.36.80.003
ORF1ab/nsp137E37DgaGgaT33B.1.3750.002459
ORF1ab/nsp137E37DgaGgaT33B.1.438.10.000322
ORF1ab/nsp137E37DgaGgaT33B.1.5640.001278
ORF1ab/nsp137E37DgaGgaT33B.1.5770.002062
ORF1ab/nsp137E37DgaGgaT33B.1.6230.001609
ORF1ab/nsp137E37DgaGgaT33B.1.6370.000219
ORF1ab/nsp137E37DgaGgaT22A.10.000564
ORF1ab/nsp137E37DgaGgaT22AY.1080.002205
ORF1ab/nsp137E37DgaGgaT22AY.1160.000574
ORF1ab/nsp137E37DgaGgaT22AY.1170.000169
ORF1ab/nsp137E37DgaGgaT22AY.120.10.000642
ORF1ab/nsp137E37DgaGgaT22AY.160.000759
ORF1ab/nsp137E37DgaGgaT22AY.340.000194
ORF1ab/nsp137E37DgaGgaT22AY.39.10.000079
ORF1ab/nsp137E37DgaGgaT22AY.4.10.001475
ORF1ab/nsp137E37DgaGgaT22AY.46.40.000329
ORF1ab/nsp137E37DgaGgaT22AY.530.000575
ORF1ab/nsp137E37DgaGgaT22AY.570.001312
ORF1ab/nsp137E37DgaGgaT22AY.670.000929
ORF1ab/nsp137E37DgaGgaT22AY.70.000392
ORF1ab/nsp137E37DgaGgaT22AY.700.000417
ORF1ab/nsp137E37DgaGgaT22AY.740.000231
ORF1ab/nsp137E37DgaGgaT22AY.90.000135
ORF1ab/nsp137E37DgaGgaT22AY.920.000575
ORF1ab/nsp137E37DgaGgaT22B.1.1.100.00223
ORF1ab/nsp137E37DgaGgaT22B.1.1.2140.000111
ORF1ab/nsp137E37DgaGgaT22B.1.1.2910.001485
ORF1ab/nsp137E37DgaGgaT22B.1.1.540.006042
ORF1ab/nsp137E37DgaGgaT22B.1.160.90.014388
ORF1ab/nsp137E37DgaGgaT22B.1.177.210.000153
ORF1ab/nsp137E37DgaGgaT22B.1.4270.000101
ORF1ab/nsp137E37DgaGgaT22B.1.6000.011696
ORF1ab/nsp137E37DgaGgaT22B.1.621.10.001012
ORF1ab/nsp137E37DgaGgaT22C.140.008658
ORF1ab/nsp137E37DgaGgaT22P.1.120.000968
ORF1ab/nsp137E37DgaGgaT22P.1.160.000748
ORF1ab/nsp137E37DgaGgaT22R.10.00018
ORF1ab/nsp137E37DgaGgaT11A0.000387
ORF1ab/nsp137E37DgaGgaT11A.20.000662
ORF1ab/nsp137E37DgaGgaT11A.2.20.001689
ORF1ab/nsp137E37DgaGgaT11AY.1130.000142
ORF1ab/nsp137E37DgaGgaT11AY.1150.005208
ORF1ab/nsp137E37DgaGgaT11AY.120.000316
ORF1ab/nsp137E37DgaGgaT11AY.1200.000037
ORF1ab/nsp137E37DgaGgaT11AY.120.2.10.000498
ORF1ab/nsp137E37DgaGgaT11AY.320.000532
ORF1ab/nsp137E37DgaGgaT11AY.4.40.000409
ORF1ab/nsp137E37DgaGgaT11AY.4.50.000107
ORF1ab/nsp137E37DgaGgaT11AY.400.000964
ORF1ab/nsp137E37DgaGgaT11AY.620.000436
ORF1ab/nsp137E37DgaGgaT11AY.650.000533
ORF1ab/nsp137E37DgaGgaT11AY.690.000187
ORF1ab/nsp137E37DgaGgaT11AY.800.001129
ORF1ab/nsp137E37DgaGgaT11AY.850.000427
ORF1ab/nsp137E37DgaGgaT11AY.98.10.000048
ORF1ab/nsp137E37DgaGgaT11AY.990.001049
ORF1ab/nsp137E37DgaGgaT11AY.99.20.000092
ORF1ab/nsp137E37DgaGgaT11AZ.30.00152
ORF1ab/nsp137E37DgaGgaT11B0.000128
ORF1ab/nsp137E37DgaGgaT11B.1.1.1570.000913
ORF1ab/nsp137E37DgaGgaT11B.1.1.2690.001353
ORF1ab/nsp137E37DgaGgaT11B.1.1.270.00565
ORF1ab/nsp137E37DgaGgaT11B.1.1.2840.000107
ORF1ab/nsp137E37DgaGgaT11B.1.1.2970.002237
ORF1ab/nsp137E37DgaGgaT11B.1.1.3060.000438
ORF1ab/nsp137E37DgaGgaT11B.1.1.3170.000412
ORF1ab/nsp137E37DgaGgaT11B.1.1.330.000421
ORF1ab/nsp137E37DgaGgaT11B.1.1.3560.008547
ORF1ab/nsp137E37DgaGgaT11B.1.1.3620.005618
ORF1ab/nsp137E37DgaGgaT11B.1.1.3690.000446
ORF1ab/nsp137E37DgaGgaT11B.1.1.3800.009804
ORF1ab/nsp137E37DgaGgaT11B.1.1.4160.000905
ORF1ab/nsp137E37DgaGgaT11B.1.1.4480.002033
ORF1ab/nsp137E37DgaGgaT11B.1.1.4870.005587
ORF1ab/nsp137E37DgaGgaT11B.1.1.630.000386
ORF1ab/nsp137E37DgaGgaT11B.1.1.700.000341
ORF1ab/nsp137E37DgaGgaT11B.1.1390.000733
ORF1ab/nsp137E37DgaGgaT11B.1.177.120.000152
ORF1ab/nsp137E37DgaGgaT11B.1.177.200.001517
ORF1ab/nsp137E37DgaGgaT11B.1.177.330.001645
ORF1ab/nsp137E37DgaGgaT11B.1.177.570.000281
ORF1ab/nsp137E37DgaGgaT11B.1.177.70.000165
ORF1ab/nsp137E37DgaGgaT11B.1.177.810.000189
ORF1ab/nsp137E37DgaGgaT11B.1.2350.002519
ORF1ab/nsp137E37DgaGgaT11B.1.258.120.007874
ORF1ab/nsp137E37DgaGgaT11B.1.258.240.010753
ORF1ab/nsp137E37DgaGgaT11B.1.258.70.001912
ORF1ab/nsp137E37DgaGgaT11B.1.2730.012987
ORF1ab/nsp137E37DgaGgaT11B.1.2890.00266
ORF1ab/nsp137E37DgaGgaT11B.1.3380.008621
ORF1ab/nsp137E37DgaGgaT11B.1.351.30.000876
ORF1ab/nsp137E37DgaGgaT11B.1.36.170.000494
ORF1ab/nsp137E37DgaGgaT11B.1.3610.001289
ORF1ab/nsp137E37DgaGgaT11B.1.4000.000429
ORF1ab/nsp137E37DgaGgaT11B.1.4170.028571
ORF1ab/nsp137E37DgaGgaT11B.1.4220.000812
ORF1ab/nsp137E37DgaGgaT11B.1.4280.00102
ORF1ab/nsp137E37DgaGgaT11B.1.5250.000113
ORF1ab/nsp137E37DgaGgaT11B.1.5410.004425
ORF1ab/nsp137E37DgaGgaT11B.1.5960.000087
ORF1ab/nsp137E37DgaGgaT11B.1.596.10.009346
ORF1ab/nsp137E37DgaGgaT11B.1.6110.04
ORF1ab/nsp137E37DgaGgaT11B.100.008264
ORF1ab/nsp137E37DgaGgaT11B.260.014706
ORF1ab/nsp137E37DgaGgaT11C.360.000911
ORF1ab/nsp137E37DgaGgaT11D.30.005917
ORF1ab/nsp137E37DgaGgaT11L.10.001905
ORF1ab/nsp137E37DgaGgaT11P.1.130.000898
ORF1ab/nsp137E37DgaGgaT11P.1.150.000232
ORF1ab/nsp137E37DgaGgaT11P.1.170.000162
ORF1ab/nsp137E37DgaGgaT11P.1.20.001156
ORF1ab/nsp137E37DgaGgaT11P.20.000187
ORF1ab/nsp137E37DgaGgaT11P.30.001595
ORF1ab/nsp137E37DgaGgaT11Q.10.000126
ORF1ab/nsp137E37DgaGgaT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.