CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 37 | E37D | E37D | nonsyn | gaG | gaT | 5637 | 5589 | 0.991485 | 374-376 |
ORF1ab/nsp1 | 37 | E37D | E37D | nonsyn | gaG | gaC | 5637 | 48 | 0.00851517 | 374-376 |
ORF1ab/nsp1 | 37 | E37K | E37K | nonsyn | Gag | Aag | 2026 | 2026 | 1 | 374-376 |
ORF1ab/nsp1 | 37 | E37E | E37E | syn | gaG | gaA | 1123 | 1123 | 1 | 374-376 |
ORF1ab/nsp1 | 37 | E37G | E37G | nonsyn | gAg | gGg | 185 | 180 | 0.972973 | 374-376 |
ORF1ab/nsp1 | 37 | E37G | E37G | nonsyn | gAG | gGA | 185 | 4 | 0.0216216 | 374-376 |
ORF1ab/nsp1 | 37 | E37G | E37G | nonsyn | gAG | gGT | 185 | 1 | 0.00540541 | 374-376 |
ORF1ab/nsp1 | 37 | E37del | E37del | del | GAG | --- | 154 | 154 | 1 | 374-376 |
ORF1ab/nsp1 | 37 | E37A | E37A | nonsyn | gAg | gCg | 64 | 64 | 1 | 374-376 |
ORF1ab/nsp1 | 37 | E37V | E37V | nonsyn | gAg | gTg | 31 | 31 | 1 | 374-376 |
ORF1ab/nsp1 | 37 | E37X | E37X | nonsyn | Gag | Tag | 14 | 14 | 1 | 374-376 |
ORF1ab/nsp1 | 37 | E37N | E37N | nonsyn | GaG | AaT | 10 | 10 | 1 | 374-376 |
ORF1ab/nsp1 | 37 | E37del2 | E37del2 | del | GAg | --g | 7 | 7 | 1 | 374-376 |
ORF1ab/nsp1 | 37 | E37Q | E37Q | nonsyn | Gag | Cag | 5 | 5 | 1 | 374-376 |
ORF1ab/nsp1 | 37 | E37del1 | E37del1 | del | gaG | ga- | 1 | 1 | 1 | 374-376 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 5589 | 5637 | All | 0.001069 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaC | 48 | 5637 | All | 0.000009 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 2026 | 2026 | All | 0.000387 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1350 | 1350 | B.1.258 | 0.089838 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1123 | 1123 | All | 0.000215 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 927 | 927 | B.1.1.333 | 0.997847 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 520 | 520 | B.1.1.7 | 0.000466 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 434 | 466 | B.1.1.7 | 0.000389 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaC | 32 | 466 | B.1.1.7 | 0.000029 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 378 | 378 | B.1.177.15 | 0.238486 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 347 | 348 | AY.4 | 0.00054 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaC | 1 | 348 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 238 | 238 | AY.46 | 0.024771 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 210 | 210 | B.1.617.2 | 0.000791 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 180 | 185 | All | 0.000034 |
ORF1ab/nsp1 | 37 | E37G | gAG | gGA | 4 | 185 | All | 0.000001 |
ORF1ab/nsp1 | 37 | E37G | gAG | gGT | 1 | 185 | All | 0 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 156 | 157 | B.1.351 | 0.004637 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaC | 1 | 157 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 154 | 154 | All | 0.000029 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 150 | 150 | B.1.429 | 0.003529 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 144 | 144 | B.1.1.7 | 0.000129 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 142 | 142 | P.1 | 0.002237 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 130 | 130 | AA.2 | 1 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 119 | 119 | AY.43 | 0.000527 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 117 | 117 | B.1.617.2 | 0.000441 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 110 | 110 | AA.4 | 1 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 110 | 110 | AY.25 | 0.000662 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 109 | 109 | AA.7 | 1 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 108 | 108 | AY.103 | 0.000671 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 101 | 101 | AY.33 | 0.006745 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 101 | 101 | B.1.575 | 0.030643 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 90 | 90 | AY.42 | 0.003621 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 90 | 90 | AY.6 | 0.003702 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 76 | 76 | AY.4.2 | 0.001648 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 73 | 73 | AY.14 | 0.006425 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 70 | 70 | B.1.595 | 0.018267 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 67 | 67 | B.1.2 | 0.00059 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 64 | 64 | All | 0.000012 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 62 | 62 | AA.5 | 1 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 62 | 62 | AA.6 | 1 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 62 | 62 | AY.5 | 0.00128 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 59 | 59 | B.1 | 0.00054 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 59 | 59 | B.1.1.306 | 0.025866 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 55 | 55 | AY.43 | 0.000244 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 50 | 50 | AY.121 | 0.006766 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 44 | 44 | A.1 | 0.012401 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 43 | 43 | AY.54 | 0.0041 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 42 | 42 | B.1.1.7 | 0.000038 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 40 | 40 | AY.4 | 0.000062 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 39 | 39 | AY.102 | 0.001034 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 39 | 39 | AY.102 | 0.001034 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 39 | 39 | AY.44 | 0.000237 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 31 | 39 | B.1.1 | 0.000562 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaC | 8 | 39 | B.1.1 | 0.000145 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 38 | 38 | AY.70 | 0.007923 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 37 | 37 | AA.3 | 1 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 37 | 37 | AY.58 | 0.033575 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 34 | 34 | AY.100 | 0.001564 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 33 | 33 | B.1.398 | 0.098214 |
ORF1ab/nsp1 | 37 | E37V | gAg | gTg | 31 | 31 | All | 0.000006 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 31 | 31 | B.1.429 | 0.000729 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 28 | 28 | AY.27 | 0.001812 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 25 | 27 | AY.3 | 0.000249 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaC | 2 | 27 | AY.3 | 0.00002 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 27 | 27 | B.1 | 0.000247 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 27 | 27 | B.1.221 | 0.001918 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 24 | 24 | AE.6 | 0.923077 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 24 | 24 | AY.39.1 | 0.000951 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 24 | 24 | AY.98.1 | 0.001162 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 24 | 24 | B.1.617.2 | 0.00009 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 23 | 23 | AY.4 | 0.000036 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 23 | 23 | AY.44 | 0.00014 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 23 | 23 | B.1.234 | 0.003035 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 23 | 23 | B.1.617.2 | 0.000087 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 22 | 22 | B.1.177.87 | 0.016012 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 22 | 22 | P.1.14 | 0.001052 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 21 | 21 | AY.103 | 0.00013 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 21 | 21 | AY.26 | 0.000595 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 21 | 21 | B.1.1.519 | 0.000834 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 20 | 20 | AY.64 | 0.011905 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 20 | 20 | B.1.36 | 0.002918 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 18 | 18 | AY.29 | 0.000284 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 18 | 18 | B.1.396 | 0.012703 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 17 | 17 | B.1.2 | 0.00015 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 15 | 15 | AY.4.5 | 0.001612 |
ORF1ab/nsp1 | 37 | E37X | Gag | Tag | 14 | 14 | All | 0.000003 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 14 | 14 | AY.118 | 0.000877 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 14 | 14 | AY.20 | 0.000544 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 14 | 14 | AY.75 | 0.000784 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 14 | 14 | B.1 | 0.000128 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 14 | 14 | B.1.177.81 | 0.002651 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 14 | 14 | B.1.258.22 | 0.037333 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 14 | 14 | B.1.582 | 0.006869 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 13 | 13 | B.1.160 | 0.000405 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 13 | 13 | B.1.177 | 0.000171 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 12 | 12 | AY.3 | 0.000119 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 12 | 12 | B.1.36 | 0.001751 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 11 | 11 | AY.45 | 0.001339 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 11 | 11 | B.1.1.291 | 0.008166 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 11 | 11 | B.1.526 | 0.000259 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 11 | 11 | B.1.621 | 0.000974 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 11 | 11 | Q.8 | 0.001814 |
ORF1ab/nsp1 | 37 | E37N | GaG | AaT | 10 | 10 | All | 0.000002 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 10 | 10 | AY.61 | 0.001048 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 10 | 10 | AY.9.2 | 0.000367 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 9 | 10 | B.1 | 0.000082 |
ORF1ab/nsp1 | 37 | E37G | gAG | gGA | 1 | 10 | B.1 | 0.000009 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 9 | 9 | AY.5 | 0.000186 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 9 | 9 | AY.54 | 0.000858 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 9 | 9 | AY.7.1 | 0.001014 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp1 | 37 | E37V | gAg | gTg | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 9 | 9 | B.1.428.2 | 0.3 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 8 | 8 | AE.8 | 0.003912 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 8 | 8 | B.1.240 | 0.001725 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 8 | 8 | B.1.311 | 0.002197 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp1 | 37 | E37del2 | GAg | --g | 7 | 7 | All | 0.000001 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 7 | 7 | AY.9.1 | 0.000586 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 7 | 7 | B.1.177.56 | 0.004673 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 7 | 7 | B.1.356 | 0.01209 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 7 | 7 | B.1.609 | 0.003356 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 6 | 6 | AA.1 | 0.043478 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 6 | 6 | AY.114 | 0.001387 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 6 | 6 | AY.116.1 | 0.001869 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp1 | 37 | E37V | gAg | gTg | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 6 | 6 | AY.5.4 | 0.00166 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 6 | 6 | AY.7.1 | 0.000676 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 6 | 6 | B.1.1.27 | 0.033898 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 6 | 6 | B.1.1.277 | 0.004552 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 4 | 6 | D.2 | 0.0003 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaC | 2 | 6 | D.2 | 0.00015 |
ORF1ab/nsp1 | 37 | E37Q | Gag | Cag | 5 | 5 | All | 0.000001 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 5 | 5 | AY.101 | 0.002452 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 5 | 5 | B.1.1.189 | 0.007564 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 5 | 5 | B.1.1.396 | 0.227273 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 5 | 5 | B.1.1.398 | 0.016129 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 5 | 5 | B.1.369 | 0.001426 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 5 | 5 | B.1.599 | 0.018248 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 4 | 4 | AY.109 | 0.002959 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp1 | 37 | E37N | GaG | AaT | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp1 | 37 | E37V | gAg | gTg | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 4 | 4 | AY.95 | 0.003044 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 4 | 4 | B | 0.000511 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 4 | 4 | B.1.177.51 | 0.018265 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 4 | 4 | B.1.177.86 | 0.000734 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 4 | 4 | B.1.22.1 | 0.125 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 4 | 4 | B.1.258.14 | 0.003922 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 4 | 4 | B.1.456 | 0.013072 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 4 | 4 | B.1.612 | 0.01061 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 3 | 3 | AE.8 | 0.001467 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp1 | 37 | E37V | gAg | gTg | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp1 | 37 | E37del2 | GAg | --g | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 3 | 3 | AY.91 | 0.002191 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp1 | 37 | E37V | gAg | gTg | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp1 | 37 | E37del2 | GAg | --g | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 3 | 3 | B.1.36.10 | 0.014354 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 3 | 3 | B.1.36.16 | 0.004274 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 3 | 3 | B.1.577 | 0.002062 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp1 | 37 | E37X | Gag | Tag | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | AY.4.1 | 0.001475 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp1 | 37 | E37X | Gag | Tag | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 2 | 2 | B.1.1.237 | 0.010811 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 2 | 2 | B.1.1.273 | 0.013514 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 1 | 2 | B.1.1.306 | 0.000438 |
ORF1ab/nsp1 | 37 | E37G | gAG | gGA | 1 | 2 | B.1.1.306 | 0.000438 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 2 | 2 | B.1.1.507 | 0.017391 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | B.1.1.54 | 0.006042 |
ORF1ab/nsp1 | 37 | E37X | Gag | Tag | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp1 | 37 | E37V | gAg | gTg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 2 | 2 | B.1.1.74 | 0.008621 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | B.1.160.9 | 0.014388 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | B.1.600 | 0.011696 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 2 | 2 | C.36.3.1 | 0.005435 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp1 | 37 | E37del1 | gaG | ga- | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 37 | E37V | gAg | gTg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp1 | 37 | E37Q | Gag | Cag | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp1 | 37 | E37Q | Gag | Cag | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 37 | E37Q | Gag | Cag | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 37 | E37N | GaG | AaT | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 37 | E37V | gAg | gTg | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 37 | E37N | GaG | AaT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp1 | 37 | E37del2 | GAg | --g | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp1 | 37 | E37N | GaG | AaT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 37 | E37Q | Gag | Cag | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp1 | 37 | E37N | GaG | AaT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp1 | 37 | E37N | GaG | AaT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 37 | E37G | gAG | gGT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 37 | E37del1 | gaG | ga- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 37 | E37Q | Gag | Cag | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp1 | 37 | E37X | Gag | Tag | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.1.356 | 0.008547 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.1.380 | 0.009804 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp1 | 37 | E37N | GaG | AaT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp1 | 37 | E37X | Gag | Tag | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp1 | 37 | E37X | Gag | Tag | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.258.12 | 0.007874 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.258.24 | 0.010753 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.273 | 0.012987 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.276 | 0.016949 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 1 | 1 | B.1.36.12 | 0.009615 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp1 | 37 | E37X | Gag | Tag | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.415.1 | 0.007576 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.417 | 0.028571 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaC | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp1 | 37 | E37G | gAG | gGA | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaC | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp1 | 37 | E37G | gAg | gGg | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp1 | 37 | E37X | Gag | Tag | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 37 | E37X | Gag | Tag | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.1.611 | 0.04 |
ORF1ab/nsp1 | 37 | E37G | gAG | gGA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 37 | E37V | gAg | gTg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 37 | E37V | gAg | gTg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.10 | 0.008264 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | B.26 | 0.014706 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 37 | E37A | gAg | gCg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | L.1 | 0.001905 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | L.1 | 0.001905 |
ORF1ab/nsp1 | 37 | E37X | Gag | Tag | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp1 | 37 | E37D | gaG | gaT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp1 | 37 | E37K | Gag | Aag | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp1 | 37 | E37E | gaG | gaA | 1 | 1 | S.1 | 0.00495 |
ORF1ab/nsp1 | 37 | E37del | GAG | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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