CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 33 & Codon = gaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp133D33DD33DsyngaCgaT253925391362-364

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp133D33DgaCgaT25392539All0.000486
ORF1ab/nsp133D33DgaCgaT957957B.1.20.008427
ORF1ab/nsp133D33DgaCgaT288288B.1.617.20.001084
ORF1ab/nsp133D33DgaCgaT252252AY.430.001116
ORF1ab/nsp133D33DgaCgaT211211AY.40.000328
ORF1ab/nsp133D33DgaCgaT176176B.1.1.70.000158
ORF1ab/nsp133D33DgaCgaT7575AY.390.001853
ORF1ab/nsp133D33DgaCgaT5353B.1.3480.963636
ORF1ab/nsp133D33DgaCgaT5151AY.440.00031
ORF1ab/nsp133D33DgaCgaT4444AY.30.000438
ORF1ab/nsp133D33DgaCgaT4040B.10.000366
ORF1ab/nsp133D33DgaCgaT2626AY.690.004853
ORF1ab/nsp133D33DgaCgaT2626B.1.5260.000611
ORF1ab/nsp133D33DgaCgaT2525B.1.177.620.029797
ORF1ab/nsp133D33DgaCgaT2323AY.260.000651
ORF1ab/nsp133D33DgaCgaT1515P.1.150.003485
ORF1ab/nsp133D33DgaCgaT1414AY.1030.000087
ORF1ab/nsp133D33DgaCgaT1414C.370.001625
ORF1ab/nsp133D33DgaCgaT1313A.261
ORF1ab/nsp133D33DgaCgaT1313AY.1180.000814
ORF1ab/nsp133D33DgaCgaT1212AY.250.000072
ORF1ab/nsp133D33DgaCgaT1010AY.1020.000265
ORF1ab/nsp133D33DgaCgaT1010B.1.10.000181
ORF1ab/nsp133D33DgaCgaT99AY.860.007469
ORF1ab/nsp133D33DgaCgaT88AY.1190.000282
ORF1ab/nsp133D33DgaCgaT88Q.10.001011
ORF1ab/nsp133D33DgaCgaT77AY.120.002212
ORF1ab/nsp133D33DgaCgaT77B.1.1770.000092
ORF1ab/nsp133D33DgaCgaT66AY.540.000572
ORF1ab/nsp133D33DgaCgaT66B.1.1.4320.007595
ORF1ab/nsp133D33DgaCgaT66B.1.4290.000141
ORF1ab/nsp133D33DgaCgaT44AY.1000.000184
ORF1ab/nsp133D33DgaCgaT44AY.530.00115
ORF1ab/nsp133D33DgaCgaT44AY.610.000419
ORF1ab/nsp133D33DgaCgaT44AY.980.000316
ORF1ab/nsp133D33DgaCgaT44B.1.1600.000125
ORF1ab/nsp133D33DgaCgaT44B.1.177.210.000306
ORF1ab/nsp133D33DgaCgaT44B.1.3510.000119
ORF1ab/nsp133D33DgaCgaT44B.1.5960.000349
ORF1ab/nsp133D33DgaCgaT33AY.3.10.000256
ORF1ab/nsp133D33DgaCgaT33AY.4.20.000065
ORF1ab/nsp133D33DgaCgaT33AY.470.000093
ORF1ab/nsp133D33DgaCgaT33AY.750.000168
ORF1ab/nsp133D33DgaCgaT33B.1.36.290.001552
ORF1ab/nsp133D33DgaCgaT33B.1.3710.003367
ORF1ab/nsp133D33DgaCgaT33B.1.6210.000266
ORF1ab/nsp133D33DgaCgaT22AY.1130.000285
ORF1ab/nsp133D33DgaCgaT22AY.120.10.000642
ORF1ab/nsp133D33DgaCgaT22AY.120.2.10.000997
ORF1ab/nsp133D33DgaCgaT22AY.1210.000271
ORF1ab/nsp133D33DgaCgaT22AY.330.000134
ORF1ab/nsp133D33DgaCgaT22AY.450.000243
ORF1ab/nsp133D33DgaCgaT22AY.460.000208
ORF1ab/nsp133D33DgaCgaT22AY.60.000082
ORF1ab/nsp133D33DgaCgaT22AY.890.009804
ORF1ab/nsp133D33DgaCgaT22AY.920.000575
ORF1ab/nsp133D33DgaCgaT22AY.99.20.000184
ORF1ab/nsp133D33DgaCgaT22B0.000256
ORF1ab/nsp133D33DgaCgaT22B.1.1.2910.001485
ORF1ab/nsp133D33DgaCgaT22B.1.1.3370.007194
ORF1ab/nsp133D33DgaCgaT22B.1.160.150.009901
ORF1ab/nsp133D33DgaCgaT22B.1.177.830.002963
ORF1ab/nsp133D33DgaCgaT22B.1.2350.005038
ORF1ab/nsp133D33DgaCgaT22B.1.4270.000101
ORF1ab/nsp133D33DgaCgaT22P.20.000373
ORF1ab/nsp133D33DgaCgaT11A.50.001923
ORF1ab/nsp133D33DgaCgaT11AM.40.003571
ORF1ab/nsp133D33DgaCgaT11AY.1010.00049
ORF1ab/nsp133D33DgaCgaT11AY.1080.001103
ORF1ab/nsp133D33DgaCgaT11AY.1110.000183
ORF1ab/nsp133D33DgaCgaT11AY.1160.000287
ORF1ab/nsp133D33DgaCgaT11AY.130.000161
ORF1ab/nsp133D33DgaCgaT11AY.16.10.00047
ORF1ab/nsp133D33DgaCgaT11AY.200.000039
ORF1ab/nsp133D33DgaCgaT11AY.230.00007
ORF1ab/nsp133D33DgaCgaT11AY.290.000016
ORF1ab/nsp133D33DgaCgaT11AY.410.000294
ORF1ab/nsp133D33DgaCgaT11AY.420.00004
ORF1ab/nsp133D33DgaCgaT11AY.50.000021
ORF1ab/nsp133D33DgaCgaT11AY.520.000814
ORF1ab/nsp133D33DgaCgaT11AY.640.000595
ORF1ab/nsp133D33DgaCgaT11AY.650.000533
ORF1ab/nsp133D33DgaCgaT11AY.680.000274
ORF1ab/nsp133D33DgaCgaT11AY.730.000665
ORF1ab/nsp133D33DgaCgaT11AY.90.000068
ORF1ab/nsp133D33DgaCgaT11AY.990.001049
ORF1ab/nsp133D33DgaCgaT11AZ.20.000821
ORF1ab/nsp133D33DgaCgaT11B.1.1.2220.000204
ORF1ab/nsp133D33DgaCgaT11B.1.1.3060.000438
ORF1ab/nsp133D33DgaCgaT11B.1.1.3110.000358
ORF1ab/nsp133D33DgaCgaT11B.1.1.3170.000412
ORF1ab/nsp133D33DgaCgaT11B.1.1.3690.000446
ORF1ab/nsp133D33DgaCgaT11B.1.177.730.000566
ORF1ab/nsp133D33DgaCgaT11B.1.2210.000071
ORF1ab/nsp133D33DgaCgaT11B.1.2580.000067
ORF1ab/nsp133D33DgaCgaT11B.1.3360.002439
ORF1ab/nsp133D33DgaCgaT11B.1.4280.00102
ORF1ab/nsp133D33DgaCgaT11B.1.466.20.000391
ORF1ab/nsp133D33DgaCgaT11B.1.5240.001406
ORF1ab/nsp133D33DgaCgaT11B.1.5250.000113
ORF1ab/nsp133D33DgaCgaT11B.1.5800.004065
ORF1ab/nsp133D33DgaCgaT11B.1.5950.000261
ORF1ab/nsp133D33DgaCgaT11B.1.6090.000479
ORF1ab/nsp133D33DgaCgaT11B.1.617.10.000129
ORF1ab/nsp133D33DgaCgaT11B.1.6280.000352
ORF1ab/nsp133D33DgaCgaT11C.160.00106
ORF1ab/nsp133D33DgaCgaT11C.390.018868
ORF1ab/nsp133D33DgaCgaT11N.30.005814

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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