CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 33 & Codon = Aac

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp133D33ND33NnonsynGacAac109710971362-364

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp133D33NGacAac10971097All0.00021
ORF1ab/nsp133D33NGacAac219219B.1.4290.005153
ORF1ab/nsp133D33NGacAac134134B.1.1770.001764
ORF1ab/nsp133D33NGacAac125125B.1.1.70.000112
ORF1ab/nsp133D33NGacAac7878B.1.177.200.118361
ORF1ab/nsp133D33NGacAac6060AY.1030.000373
ORF1ab/nsp133D33NGacAac5050AY.40.000078
ORF1ab/nsp133D33NGacAac4747AD.20.010291
ORF1ab/nsp133D33NGacAac3131B.10.000284
ORF1ab/nsp133D33NGacAac2626B.1.617.20.000098
ORF1ab/nsp133D33NGacAac2222B.1.10.000399
ORF1ab/nsp133D33NGacAac2020B.1.177.790.046838
ORF1ab/nsp133D33NGacAac1919AY.430.000084
ORF1ab/nsp133D33NGacAac1919AY.750.001064
ORF1ab/nsp133D33NGacAac1818P.10.000284
ORF1ab/nsp133D33NGacAac1717B.1.258.170.001768
ORF1ab/nsp133D33NGacAac1616AY.290.000252
ORF1ab/nsp133D33NGacAac1515AY.440.000091
ORF1ab/nsp133D33NGacAac1414B.1.20.000123
ORF1ab/nsp133D33NGacAac99AY.140.000792
ORF1ab/nsp133D33NGacAac88AY.250.000048
ORF1ab/nsp133D33NGacAac88B.1.2430.000557
ORF1ab/nsp133D33NGacAac88B.1.4270.000404
ORF1ab/nsp133D33NGacAac77AY.470.000218
ORF1ab/nsp133D33NGacAac77B.1.36.80.007
ORF1ab/nsp133D33NGacAac66AY.1020.000159
ORF1ab/nsp133D33NGacAac55AY.9.20.000184
ORF1ab/nsp133D33NGacAac55B.1.1.2220.00102
ORF1ab/nsp133D33NGacAac44AY.200.000155
ORF1ab/nsp133D33NGacAac44AY.4.20.000087
ORF1ab/nsp133D33NGacAac44AY.90.00027
ORF1ab/nsp133D33NGacAac44B.1.1600.000125
ORF1ab/nsp133D33NGacAac44B.1.177.320.005398
ORF1ab/nsp133D33NGacAac44B.1.5960.000349
ORF1ab/nsp133D33NGacAac33AY.1000.000138
ORF1ab/nsp133D33NGacAac33AY.1180.000188
ORF1ab/nsp133D33NGacAac33AY.390.000074
ORF1ab/nsp133D33NGacAac33AY.50.000062
ORF1ab/nsp133D33NGacAac33AY.5.30.001012
ORF1ab/nsp133D33NGacAac33AY.980.000237
ORF1ab/nsp133D33NGacAac33B.1.177.170.002463
ORF1ab/nsp133D33NGacAac33B.1.6210.000266
ORF1ab/nsp133D33NGacAac22AY.1190.000071
ORF1ab/nsp133D33NGacAac22AY.1200.000074
ORF1ab/nsp133D33NGacAac22AY.30.00002
ORF1ab/nsp133D33NGacAac22AY.46.60.000144
ORF1ab/nsp133D33NGacAac22AY.510.001818
ORF1ab/nsp133D33NGacAac22AY.880.001768
ORF1ab/nsp133D33NGacAac22B.1.1.4870.011173
ORF1ab/nsp133D33NGacAac22B.1.5170.000854
ORF1ab/nsp133D33NGacAac11A.270.001656
ORF1ab/nsp133D33NGacAac11AP.10.001502
ORF1ab/nsp133D33NGacAac11AY.160.00038
ORF1ab/nsp133D33NGacAac11AY.240.000431
ORF1ab/nsp133D33NGacAac11AY.260.000028
ORF1ab/nsp133D33NGacAac11AY.270.000065
ORF1ab/nsp133D33NGacAac11AY.300.000396
ORF1ab/nsp133D33NGacAac11AY.39.10.00004
ORF1ab/nsp133D33NGacAac11AY.420.00004
ORF1ab/nsp133D33NGacAac11AY.810.001992
ORF1ab/nsp133D33NGacAac11AY.850.000427
ORF1ab/nsp133D33NGacAac11AY.900.000684
ORF1ab/nsp133D33NGacAac11AY.98.10.000048
ORF1ab/nsp133D33NGacAac11AY.99.20.000092
ORF1ab/nsp133D33NGacAac11B.1.1.1860.003436
ORF1ab/nsp133D33NGacAac11B.1.1.2160.00089
ORF1ab/nsp133D33NGacAac11B.1.1.5190.00004
ORF1ab/nsp133D33NGacAac11B.1.1190.010526
ORF1ab/nsp133D33NGacAac11B.1.1280.000635
ORF1ab/nsp133D33NGacAac11B.1.177.210.000076
ORF1ab/nsp133D33NGacAac11B.1.177.570.000281
ORF1ab/nsp133D33NGacAac11B.1.177.730.000566
ORF1ab/nsp133D33NGacAac11B.1.177.830.001481
ORF1ab/nsp133D33NGacAac11B.1.2210.000071
ORF1ab/nsp133D33NGacAac11B.1.3110.000275
ORF1ab/nsp133D33NGacAac11B.1.3240.001605
ORF1ab/nsp133D33NGacAac11B.1.438.10.000107
ORF1ab/nsp133D33NGacAac11B.1.4560.003268
ORF1ab/nsp133D33NGacAac11B.1.466.20.000391
ORF1ab/nsp133D33NGacAac11B.1.5250.000113
ORF1ab/nsp133D33NGacAac11B.1.5750.000303
ORF1ab/nsp133D33NGacAac11B.1.5800.004065
ORF1ab/nsp133D33NGacAac11B.1.617.10.000129
ORF1ab/nsp133D33NGacAac11P.1.100.000269
ORF1ab/nsp133D33NGacAac11P.1.140.000048
ORF1ab/nsp133D33NGacAac11P.1.150.000232
ORF1ab/nsp133D33NGacAac11P.20.000187
ORF1ab/nsp133D33NGacAac11Q.30.000145
ORF1ab/nsp133D33NGacAac11Q.80.000165
ORF1ab/nsp133D33NGacAac11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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