CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 32

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp132G32GG32GsynggAggG181517040.938843359-361
ORF1ab/nsp132G32GG32GsynggAggC1815890.0490358359-361
ORF1ab/nsp132G32GG32GsynggAggT1815220.0121212359-361
ORF1ab/nsp132G32delG32deldelGGA---1601601359-361
ORF1ab/nsp132G32RG32RnonsynGgaAga94880.93617359-361
ORF1ab/nsp132G32RG32RnonsynGgaCga9450.0531915359-361
ORF1ab/nsp132G32RG32RnonsynGgACgC9410.0106383359-361
ORF1ab/nsp132G32EG32EnonsyngGagAa54541359-361
ORF1ab/nsp132G32VG32VnonsyngGagTa22221359-361
ORF1ab/nsp132G32XG32XnonsynGgaTga12100.833333359-361
ORF1ab/nsp132G32XG32XnonsynGGaTAa1220.166667359-361
ORF1ab/nsp132G32del1G32del1delGga-ga430.75359-361
ORF1ab/nsp132G32del1G32del1delgGAgA-410.25359-361
ORF1ab/nsp132G32del2G32del2delGGa--a210.5359-361
ORF1ab/nsp132G32del2G32del2delgGAg--210.5359-361
ORF1ab/nsp132G32DG32DnonsyngGAgAT111359-361
ORF1ab/nsp132G32KG32KnonsynGGAAAG111359-361

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp132G32GggAggG17041815All0.000326
ORF1ab/nsp132G32GggAggC891815All0.000017
ORF1ab/nsp132G32GggAggT221815All0.000004
ORF1ab/nsp132G32GggAggG595595A.270.985099
ORF1ab/nsp132G32GggAggG168173B.1.617.20.000633
ORF1ab/nsp132G32GggAggC5173B.1.617.20.000019
ORF1ab/nsp132G32delGGA---160160All0.000031
ORF1ab/nsp132G32GggAggG127158B.1.1.70.000114
ORF1ab/nsp132G32GggAggC28158B.1.1.70.000025
ORF1ab/nsp132G32GggAggT3158B.1.1.70.000003
ORF1ab/nsp132G32GggAggG126126A0.048762
ORF1ab/nsp132G32GggAggG126126AY.430.000558
ORF1ab/nsp132G32GggAggG104104A.190.981132
ORF1ab/nsp132G32RGgaAga8894All0.000017
ORF1ab/nsp132G32RGgaCga594All0.000001
ORF1ab/nsp132G32RGgACgC194All0
ORF1ab/nsp132G32GggAggG7676B.1.1.2220.015504
ORF1ab/nsp132G32EgGagAa5454All0.00001
ORF1ab/nsp132G32GggAggG4747AY.1190.001659
ORF1ab/nsp132G32delGGA---4444B.1.1.70.000039
ORF1ab/nsp132G32GggAggG4141AY.1030.000255
ORF1ab/nsp132G32GggAggC1838AY.440.00011
ORF1ab/nsp132G32GggAggT1138AY.440.000067
ORF1ab/nsp132G32GggAggG938AY.440.000055
ORF1ab/nsp132G32GggAggG3338P.10.00052
ORF1ab/nsp132G32GggAggC538P.10.000079
ORF1ab/nsp132G32GggAggG2537AY.40.000039
ORF1ab/nsp132G32GggAggC937AY.40.000014
ORF1ab/nsp132G32GggAggT337AY.40.000005
ORF1ab/nsp132G32VgGagTa2222All0.000004
ORF1ab/nsp132G32GggAggG2020AY.390.000494
ORF1ab/nsp132G32GggAggG1819B.10.000165
ORF1ab/nsp132G32GggAggC119B.10.000009
ORF1ab/nsp132G32delGGA---1717AY.40.000026
ORF1ab/nsp132G32GggAggG1616B0.002045
ORF1ab/nsp132G32RGgaAga1414AY.40.000022
ORF1ab/nsp132G32EgGagAa1414AY.40.000022
ORF1ab/nsp132G32GggAggG1213AY.30.000119
ORF1ab/nsp132G32GggAggC113AY.30.00001
ORF1ab/nsp132G32GggAggG1313AY.470.000404
ORF1ab/nsp132G32GggAggG1113B.1.20.000097
ORF1ab/nsp132G32GggAggC213B.1.20.000018
ORF1ab/nsp132G32XGgaTga1012All0.000002
ORF1ab/nsp132G32XGGaTAa212All0
ORF1ab/nsp132G32GggAggG712AY.250.000042
ORF1ab/nsp132G32GggAggC512AY.250.00003
ORF1ab/nsp132G32EgGagAa1111AY.1200.000409
ORF1ab/nsp132G32GggAggG1111B.1.2430.000765
ORF1ab/nsp132G32delGGA---99AY.230.000628
ORF1ab/nsp132G32GggAggG89AY.290.000126
ORF1ab/nsp132G32GggAggT19AY.290.000016
ORF1ab/nsp132G32GggAggG99B.1.6230.004828
ORF1ab/nsp132G32RGgaAga88B.1.1.70.000007
ORF1ab/nsp132G32RGgaAga77AY.1030.000043
ORF1ab/nsp132G32delGGA---77AY.430.000031
ORF1ab/nsp132G32GggAggG77B.1.10.000127
ORF1ab/nsp132G32GggAggG46AY.230.000279
ORF1ab/nsp132G32GggAggC26AY.230.000139
ORF1ab/nsp132G32RGgaAga66AY.250.000036
ORF1ab/nsp132G32GggAggG56AY.460.00052
ORF1ab/nsp132G32GggAggT16AY.460.000104
ORF1ab/nsp132G32EgGagAa66B.1.1.70.000005
ORF1ab/nsp132G32delGGA---66B.1.1770.000079
ORF1ab/nsp132G32delGGA---55AY.4.50.000537
ORF1ab/nsp132G32RGgaAga55AY.430.000022
ORF1ab/nsp132G32VgGagTa55AY.470.000156
ORF1ab/nsp132G32GggAggC55B.1.5610.001985
ORF1ab/nsp132G32del1Gga-ga34All0.000001
ORF1ab/nsp132G32del1gGAgA-14All0
ORF1ab/nsp132G32delGGA---44AY.250.000024
ORF1ab/nsp132G32GggAggG44AY.98.10.000194
ORF1ab/nsp132G32delGGA---44B.1.1.330.001684
ORF1ab/nsp132G32delGGA---44B.1.1.3480.003185
ORF1ab/nsp132G32VgGagTa44B.1.1.70.000004
ORF1ab/nsp132G32RGgaAga44B.1.160.160.003717
ORF1ab/nsp132G32RGgaAga44B.1.5250.000453
ORF1ab/nsp132G32EgGagAa44B.1.617.20.000015
ORF1ab/nsp132G32GggAggG34D.20.000225
ORF1ab/nsp132G32GggAggT14D.20.000075
ORF1ab/nsp132G32GggAggG44P.1.70.001277
ORF1ab/nsp132G32GggAggG33A.2.50.001497
ORF1ab/nsp132G32GggAggG33A.290.015957
ORF1ab/nsp132G32GggAggG33AY.1020.00008
ORF1ab/nsp132G32RGgaAga33AY.1060.001005
ORF1ab/nsp132G32GggAggG33AY.29.10.000662
ORF1ab/nsp132G32VgGagTa33AY.40.000005
ORF1ab/nsp132G32RGgaAga23AY.440.000012
ORF1ab/nsp132G32RGgaCga13AY.440.000006
ORF1ab/nsp132G32EgGagAa33AY.46.60.000217
ORF1ab/nsp132G32RGgaAga33AY.470.000093
ORF1ab/nsp132G32VgGagTa33B.10.000027
ORF1ab/nsp132G32XGgaTga23B.10.000018
ORF1ab/nsp132G32XGGaTAa13B.10.000009
ORF1ab/nsp132G32GggAggG33B.1.1600.000094
ORF1ab/nsp132G32GggAggC23B.1.1770.000026
ORF1ab/nsp132G32GggAggG13B.1.1770.000013
ORF1ab/nsp132G32GggAggG23B.1.177.730.001133
ORF1ab/nsp132G32GggAggT13B.1.177.730.000566
ORF1ab/nsp132G32VgGagTa33B.1.20.000026
ORF1ab/nsp132G32GggAggG33B.1.4290.000071
ORF1ab/nsp132G32RGgaAga23B.1.617.20.000008
ORF1ab/nsp132G32RGgaCga13B.1.617.20.000004
ORF1ab/nsp132G32del2GGa--a12All0
ORF1ab/nsp132G32del2gGAg--12All0
ORF1ab/nsp132G32GggAggG22AY.120.000632
ORF1ab/nsp132G32RGgaAga22AY.140.000176
ORF1ab/nsp132G32RGgaAga22AY.260.000057
ORF1ab/nsp132G32delGGA---22AY.30.00002
ORF1ab/nsp132G32del1Gga-ga22AY.440.000012
ORF1ab/nsp132G32GggAggG22AY.5.40.000553
ORF1ab/nsp132G32RGgaAga22AY.90.000135
ORF1ab/nsp132G32delGGA---22AY.90.000135
ORF1ab/nsp132G32RGgaAga22AY.920.000575
ORF1ab/nsp132G32GggAggG22AY.99.20.000184
ORF1ab/nsp132G32XGgaTga22B0.000256
ORF1ab/nsp132G32GggAggG22B.1.1.1610.007067
ORF1ab/nsp132G32XGgaTga22B.1.1.70.000002
ORF1ab/nsp132G32delGGA---22B.1.177.180.00232
ORF1ab/nsp132G32GggAggC22B.1.177.440.001038
ORF1ab/nsp132G32RGgaAga22B.1.2210.000142
ORF1ab/nsp132G32GggAggG22B.1.2220.003384
ORF1ab/nsp132G32delGGA---22B.1.36.170.000988
ORF1ab/nsp132G32GggAggG22B.1.4270.000101
ORF1ab/nsp132G32GggAggG22B.1.4680.011429
ORF1ab/nsp132G32EgGagAa22D.20.00015
ORF1ab/nsp132G32delGGA---22N.40.008511
ORF1ab/nsp132G32delGGA---22N.60.014184
ORF1ab/nsp132G32delGGA---22P.20.000373
ORF1ab/nsp132G32delGGA---11A0.000387
ORF1ab/nsp132G32GggAggG11A.10.000282
ORF1ab/nsp132G32GggAggG11A.20.000662
ORF1ab/nsp132G32delGGA---11AD.20.000219
ORF1ab/nsp132G32GggAggG11AE.80.000489
ORF1ab/nsp132G32DgGAgAT11All0
ORF1ab/nsp132G32KGGAAAG11All0
ORF1ab/nsp132G32delGGA---11AY.1110.000183
ORF1ab/nsp132G32GggAggG11AY.1110.000183
ORF1ab/nsp132G32GggAggG11AY.1140.000231
ORF1ab/nsp132G32delGGA---11AY.1160.000287
ORF1ab/nsp132G32GggAggG11AY.1160.000287
ORF1ab/nsp132G32GggAggG11AY.1170.000085
ORF1ab/nsp132G32delGGA---11AY.120.000316
ORF1ab/nsp132G32RGgaAga11AY.1200.000037
ORF1ab/nsp132G32delGGA---11AY.1200.000037
ORF1ab/nsp132G32EgGagAa11AY.16.10.00047
ORF1ab/nsp132G32GggAggG11AY.200.000039
ORF1ab/nsp132G32RGgACgC11AY.230.00007
ORF1ab/nsp132G32GggAggC11AY.240.000431
ORF1ab/nsp132G32GggAggG11AY.260.000028
ORF1ab/nsp132G32EgGagAa11AY.260.000028
ORF1ab/nsp132G32GggAggG11AY.270.000065
ORF1ab/nsp132G32RGgaAga11AY.290.000016
ORF1ab/nsp132G32VgGagTa11AY.290.000016
ORF1ab/nsp132G32EgGagAa11AY.30.00001
ORF1ab/nsp132G32RGgaAga11AY.3.10.000085
ORF1ab/nsp132G32delGGA---11AY.330.000067
ORF1ab/nsp132G32GggAggG11AY.340.000097
ORF1ab/nsp132G32GggAggG11AY.360.000148
ORF1ab/nsp132G32delGGA---11AY.380.000499
ORF1ab/nsp132G32del1Gga-ga11AY.40.000002
ORF1ab/nsp132G32del2gGAg--11AY.40.000002
ORF1ab/nsp132G32RGgaAga11AY.4.20.000022
ORF1ab/nsp132G32RGgaAga11AY.4.2.10.000149
ORF1ab/nsp132G32delGGA---11AY.4.40.000409
ORF1ab/nsp132G32RGgaAga11AY.4.40.000409
ORF1ab/nsp132G32delGGA---11AY.410.000294
ORF1ab/nsp132G32RGgaAga11AY.420.00004
ORF1ab/nsp132G32del1gGAgA-11AY.430.000004
ORF1ab/nsp132G32EgGagAa11AY.440.000006
ORF1ab/nsp132G32delGGA---11AY.450.000122
ORF1ab/nsp132G32delGGA---11AY.460.000104
ORF1ab/nsp132G32GggAggG11AY.46.40.000165
ORF1ab/nsp132G32VgGagTa11AY.46.50.000198
ORF1ab/nsp132G32RGgaAga11AY.46.60.000072
ORF1ab/nsp132G32GggAggG11AY.46.60.000072
ORF1ab/nsp132G32delGGA---11AY.50.000021
ORF1ab/nsp132G32EgGagAa11AY.550.000917
ORF1ab/nsp132G32delGGA---11AY.60.000041
ORF1ab/nsp132G32delGGA---11AY.600.000938
ORF1ab/nsp132G32GggAggG11AY.640.000595
ORF1ab/nsp132G32GggAggG11AY.670.000464
ORF1ab/nsp132G32delGGA---11AY.680.000274
ORF1ab/nsp132G32GggAggG11AY.690.000187
ORF1ab/nsp132G32RGgaAga11AY.7.10.000113
ORF1ab/nsp132G32RGgaAga11AY.75.10.00018
ORF1ab/nsp132G32delGGA---11AY.75.10.00018
ORF1ab/nsp132G32GggAggG11AY.850.000427
ORF1ab/nsp132G32delGGA---11AY.9.10.000084
ORF1ab/nsp132G32delGGA---11AY.9.20.000037
ORF1ab/nsp132G32GggAggC11AY.910.00073
ORF1ab/nsp132G32delGGA---11AY.940.000443
ORF1ab/nsp132G32delGGA---11AY.950.000761
ORF1ab/nsp132G32GggAggG11AY.960.002075
ORF1ab/nsp132G32GggAggG11AY.980.000079
ORF1ab/nsp132G32EgGagAa11AY.99.20.000092
ORF1ab/nsp132G32delGGA---11B0.000128
ORF1ab/nsp132G32EgGagAa11B.10.000009
ORF1ab/nsp132G32RGgaAga11B.10.000009
ORF1ab/nsp132G32delGGA---11B.10.000009
ORF1ab/nsp132G32XGgaTga11B.1.10.000018
ORF1ab/nsp132G32RGgaCga11B.1.10.000018
ORF1ab/nsp132G32EgGagAa11B.1.10.000018
ORF1ab/nsp132G32GggAggG11B.1.1.1410.002012
ORF1ab/nsp132G32GggAggG11B.1.1.2160.00089
ORF1ab/nsp132G32delGGA---11B.1.1.2320.001815
ORF1ab/nsp132G32RGgaAga11B.1.1.2400.004695
ORF1ab/nsp132G32EgGagAa11B.1.1.3060.000438
ORF1ab/nsp132G32delGGA---11B.1.1.3110.000358
ORF1ab/nsp132G32delGGA---11B.1.1.3120.001912
ORF1ab/nsp132G32delGGA---11B.1.1.3220.008772
ORF1ab/nsp132G32delGGA---11B.1.1.370.000193
ORF1ab/nsp132G32GggAggG11B.1.1.3880.045455
ORF1ab/nsp132G32delGGA---11B.1.1.390.00051
ORF1ab/nsp132G32GggAggG11B.1.1.4340.000349
ORF1ab/nsp132G32GggAggC11B.1.1.5190.00004
ORF1ab/nsp132G32GggAggC11B.1.1.700.000341
ORF1ab/nsp132G32delGGA---11B.1.1600.000031
ORF1ab/nsp132G32GggAggG11B.1.160.330.004425
ORF1ab/nsp132G32EgGagAa11B.1.1770.000013
ORF1ab/nsp132G32VgGagTa11B.1.1770.000013
ORF1ab/nsp132G32delGGA---11B.1.177.110.001698
ORF1ab/nsp132G32del2GGa--a11B.1.177.160.000664
ORF1ab/nsp132G32GggAggG11B.1.177.300.002513
ORF1ab/nsp132G32delGGA---11B.1.177.510.004566
ORF1ab/nsp132G32delGGA---11B.1.177.540.000606
ORF1ab/nsp132G32delGGA---11B.1.177.570.000281
ORF1ab/nsp132G32delGGA---11B.1.177.580.001332
ORF1ab/nsp132G32delGGA---11B.1.177.690.001484
ORF1ab/nsp132G32GggAggG11B.1.177.70.000165
ORF1ab/nsp132G32RGgaAga11B.1.177.810.000189
ORF1ab/nsp132G32delGGA---11B.1.177.870.000728
ORF1ab/nsp132G32GggAggG11B.1.177.870.000728
ORF1ab/nsp132G32delGGA---11B.1.177.90.001332
ORF1ab/nsp132G32delGGA---11B.1.20.000009
ORF1ab/nsp132G32RGgaAga11B.1.20.000009
ORF1ab/nsp132G32EgGagAa11B.1.20.000009
ORF1ab/nsp132G32delGGA---11B.1.221.10.002907
ORF1ab/nsp132G32RGgaAga11B.1.2580.000067
ORF1ab/nsp132G32DgGAgAT11B.1.2580.000067
ORF1ab/nsp132G32RGgaAga11B.1.351.20.000303
ORF1ab/nsp132G32GggAggG11B.1.360.000146
ORF1ab/nsp132G32EgGagAa11B.1.36.10.00114
ORF1ab/nsp132G32delGGA---11B.1.36.180.00042
ORF1ab/nsp132G32delGGA---11B.1.4270.00005
ORF1ab/nsp132G32XGgaTga11B.1.4270.00005
ORF1ab/nsp132G32delGGA---11B.1.4290.000024
ORF1ab/nsp132G32RGgaAga11B.1.4290.000024
ORF1ab/nsp132G32GggAggT11B.1.4990.00105
ORF1ab/nsp132G32GggAggG11B.1.5380.008065
ORF1ab/nsp132G32XGGaTAa11B.1.5380.008065
ORF1ab/nsp132G32GggAggG11B.1.5510.00129
ORF1ab/nsp132G32RGgaCga11B.1.5960.000087
ORF1ab/nsp132G32delGGA---11B.1.617.20.000004
ORF1ab/nsp132G32KGGAAAG11B.1.617.20.000004
ORF1ab/nsp132G32XGgaTga11B.1.617.20.000004
ORF1ab/nsp132G32RGgaAga11B.1.6210.000089
ORF1ab/nsp132G32GggAggG11B.1.6210.000089
ORF1ab/nsp132G32RGgaCga11B.30.000831
ORF1ab/nsp132G32EgGagAa11B.400.000364
ORF1ab/nsp132G32GggAggG11B.550.00295
ORF1ab/nsp132G32GggAggG11B.6.60.000889
ORF1ab/nsp132G32GggAggG11C.350.000774
ORF1ab/nsp132G32delGGA---11C.350.000774
ORF1ab/nsp132G32GggAggG11C.40.01
ORF1ab/nsp132G32XGgaTga11D.20.000075
ORF1ab/nsp132G32RGgaAga11D.20.000075
ORF1ab/nsp132G32VgGagTa11D.20.000075
ORF1ab/nsp132G32RGgaAga11P.10.000016
ORF1ab/nsp132G32GggAggG11P.1.100.000269
ORF1ab/nsp132G32EgGagAa11P.1.100.000269
ORF1ab/nsp132G32GggAggG11P.1.150.000232
ORF1ab/nsp132G32GggAggG11Q.30.000145
ORF1ab/nsp132G32GggAggG11R.10.00009
ORF1ab/nsp132G32delGGA---11U.30.003861