CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 32

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp1	32	G32G	G32G	syn	ggA	ggG	1815	1704	0.938843	359-361
ORF1ab/nsp1	32	G32G	G32G	syn	ggA	ggC	1815	89	0.0490358	359-361
ORF1ab/nsp1	32	G32G	G32G	syn	ggA	ggT	1815	22	0.0121212	359-361
ORF1ab/nsp1	32	G32del	G32del	del	GGA	---	160	160	1	359-361
ORF1ab/nsp1	32	G32R	G32R	nonsyn	Gga	Aga	94	88	0.93617	359-361
ORF1ab/nsp1	32	G32R	G32R	nonsyn	Gga	Cga	94	5	0.0531915	359-361
ORF1ab/nsp1	32	G32R	G32R	nonsyn	GgA	CgC	94	1	0.0106383	359-361
ORF1ab/nsp1	32	G32E	G32E	nonsyn	gGa	gAa	54	54	1	359-361
ORF1ab/nsp1	32	G32V	G32V	nonsyn	gGa	gTa	22	22	1	359-361
ORF1ab/nsp1	32	G32X	G32X	nonsyn	Gga	Tga	12	10	0.833333	359-361
ORF1ab/nsp1	32	G32X	G32X	nonsyn	GGa	TAa	12	2	0.166667	359-361
ORF1ab/nsp1	32	G32del1	G32del1	del	Gga	-ga	4	3	0.75	359-361
ORF1ab/nsp1	32	G32del1	G32del1	del	gGA	gA-	4	1	0.25	359-361
ORF1ab/nsp1	32	G32del2	G32del2	del	GGa	--a	2	1	0.5	359-361
ORF1ab/nsp1	32	G32del2	G32del2	del	gGA	g--	2	1	0.5	359-361
ORF1ab/nsp1	32	G32D	G32D	nonsyn	gGA	gAT	1	1	1	359-361
ORF1ab/nsp1	32	G32K	G32K	nonsyn	GGA	AAG	1	1	1	359-361

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp1	32	G32G	ggA	ggG	1704	1815	All	0.000326
ORF1ab/nsp1	32	G32G	ggA	ggC	89	1815	All	0.000017
ORF1ab/nsp1	32	G32G	ggA	ggT	22	1815	All	0.000004
ORF1ab/nsp1	32	G32G	ggA	ggG	595	595	A.27	0.985099
ORF1ab/nsp1	32	G32G	ggA	ggG	168	173	B.1.617.2	0.000633
ORF1ab/nsp1	32	G32G	ggA	ggC	5	173	B.1.617.2	0.000019
ORF1ab/nsp1	32	G32del	GGA	---	160	160	All	0.000031
ORF1ab/nsp1	32	G32G	ggA	ggG	127	158	B.1.1.7	0.000114
ORF1ab/nsp1	32	G32G	ggA	ggC	28	158	B.1.1.7	0.000025
ORF1ab/nsp1	32	G32G	ggA	ggT	3	158	B.1.1.7	0.000003
ORF1ab/nsp1	32	G32G	ggA	ggG	126	126	A	0.048762
ORF1ab/nsp1	32	G32G	ggA	ggG	126	126	AY.43	0.000558
ORF1ab/nsp1	32	G32G	ggA	ggG	104	104	A.19	0.981132
ORF1ab/nsp1	32	G32R	Gga	Aga	88	94	All	0.000017
ORF1ab/nsp1	32	G32R	Gga	Cga	5	94	All	0.000001
ORF1ab/nsp1	32	G32R	GgA	CgC	1	94	All	0
ORF1ab/nsp1	32	G32G	ggA	ggG	76	76	B.1.1.222	0.015504
ORF1ab/nsp1	32	G32E	gGa	gAa	54	54	All	0.00001
ORF1ab/nsp1	32	G32G	ggA	ggG	47	47	AY.119	0.001659
ORF1ab/nsp1	32	G32del	GGA	---	44	44	B.1.1.7	0.000039
ORF1ab/nsp1	32	G32G	ggA	ggG	41	41	AY.103	0.000255
ORF1ab/nsp1	32	G32G	ggA	ggC	18	38	AY.44	0.00011
ORF1ab/nsp1	32	G32G	ggA	ggT	11	38	AY.44	0.000067
ORF1ab/nsp1	32	G32G	ggA	ggG	9	38	AY.44	0.000055
ORF1ab/nsp1	32	G32G	ggA	ggG	33	38	P.1	0.00052
ORF1ab/nsp1	32	G32G	ggA	ggC	5	38	P.1	0.000079
ORF1ab/nsp1	32	G32G	ggA	ggG	25	37	AY.4	0.000039
ORF1ab/nsp1	32	G32G	ggA	ggC	9	37	AY.4	0.000014
ORF1ab/nsp1	32	G32G	ggA	ggT	3	37	AY.4	0.000005
ORF1ab/nsp1	32	G32V	gGa	gTa	22	22	All	0.000004
ORF1ab/nsp1	32	G32G	ggA	ggG	20	20	AY.39	0.000494
ORF1ab/nsp1	32	G32G	ggA	ggG	18	19	B.1	0.000165
ORF1ab/nsp1	32	G32G	ggA	ggC	1	19	B.1	0.000009
ORF1ab/nsp1	32	G32del	GGA	---	17	17	AY.4	0.000026
ORF1ab/nsp1	32	G32G	ggA	ggG	16	16	B	0.002045
ORF1ab/nsp1	32	G32R	Gga	Aga	14	14	AY.4	0.000022
ORF1ab/nsp1	32	G32E	gGa	gAa	14	14	AY.4	0.000022
ORF1ab/nsp1	32	G32G	ggA	ggG	12	13	AY.3	0.000119
ORF1ab/nsp1	32	G32G	ggA	ggC	1	13	AY.3	0.00001
ORF1ab/nsp1	32	G32G	ggA	ggG	13	13	AY.47	0.000404
ORF1ab/nsp1	32	G32G	ggA	ggG	11	13	B.1.2	0.000097
ORF1ab/nsp1	32	G32G	ggA	ggC	2	13	B.1.2	0.000018
ORF1ab/nsp1	32	G32X	Gga	Tga	10	12	All	0.000002
ORF1ab/nsp1	32	G32X	GGa	TAa	2	12	All	0
ORF1ab/nsp1	32	G32G	ggA	ggG	7	12	AY.25	0.000042
ORF1ab/nsp1	32	G32G	ggA	ggC	5	12	AY.25	0.00003
ORF1ab/nsp1	32	G32E	gGa	gAa	11	11	AY.120	0.000409
ORF1ab/nsp1	32	G32G	ggA	ggG	11	11	B.1.243	0.000765
ORF1ab/nsp1	32	G32del	GGA	---	9	9	AY.23	0.000628
ORF1ab/nsp1	32	G32G	ggA	ggG	8	9	AY.29	0.000126
ORF1ab/nsp1	32	G32G	ggA	ggT	1	9	AY.29	0.000016
ORF1ab/nsp1	32	G32G	ggA	ggG	9	9	B.1.623	0.004828
ORF1ab/nsp1	32	G32R	Gga	Aga	8	8	B.1.1.7	0.000007
ORF1ab/nsp1	32	G32R	Gga	Aga	7	7	AY.103	0.000043
ORF1ab/nsp1	32	G32del	GGA	---	7	7	AY.43	0.000031
ORF1ab/nsp1	32	G32G	ggA	ggG	7	7	B.1.1	0.000127
ORF1ab/nsp1	32	G32G	ggA	ggG	4	6	AY.23	0.000279
ORF1ab/nsp1	32	G32G	ggA	ggC	2	6	AY.23	0.000139
ORF1ab/nsp1	32	G32R	Gga	Aga	6	6	AY.25	0.000036
ORF1ab/nsp1	32	G32G	ggA	ggG	5	6	AY.46	0.00052
ORF1ab/nsp1	32	G32G	ggA	ggT	1	6	AY.46	0.000104
ORF1ab/nsp1	32	G32E	gGa	gAa	6	6	B.1.1.7	0.000005
ORF1ab/nsp1	32	G32del	GGA	---	6	6	B.1.177	0.000079
ORF1ab/nsp1	32	G32del	GGA	---	5	5	AY.4.5	0.000537
ORF1ab/nsp1	32	G32R	Gga	Aga	5	5	AY.43	0.000022
ORF1ab/nsp1	32	G32V	gGa	gTa	5	5	AY.47	0.000156
ORF1ab/nsp1	32	G32G	ggA	ggC	5	5	B.1.561	0.001985
ORF1ab/nsp1	32	G32del1	Gga	-ga	3	4	All	0.000001
ORF1ab/nsp1	32	G32del1	gGA	gA-	1	4	All	0
ORF1ab/nsp1	32	G32del	GGA	---	4	4	AY.25	0.000024
ORF1ab/nsp1	32	G32G	ggA	ggG	4	4	AY.98.1	0.000194
ORF1ab/nsp1	32	G32del	GGA	---	4	4	B.1.1.33	0.001684
ORF1ab/nsp1	32	G32del	GGA	---	4	4	B.1.1.348	0.003185
ORF1ab/nsp1	32	G32V	gGa	gTa	4	4	B.1.1.7	0.000004
ORF1ab/nsp1	32	G32R	Gga	Aga	4	4	B.1.160.16	0.003717
ORF1ab/nsp1	32	G32R	Gga	Aga	4	4	B.1.525	0.000453
ORF1ab/nsp1	32	G32E	gGa	gAa	4	4	B.1.617.2	0.000015
ORF1ab/nsp1	32	G32G	ggA	ggG	3	4	D.2	0.000225
ORF1ab/nsp1	32	G32G	ggA	ggT	1	4	D.2	0.000075
ORF1ab/nsp1	32	G32G	ggA	ggG	4	4	P.1.7	0.001277
ORF1ab/nsp1	32	G32G	ggA	ggG	3	3	A.2.5	0.001497
ORF1ab/nsp1	32	G32G	ggA	ggG	3	3	A.29	0.015957
ORF1ab/nsp1	32	G32G	ggA	ggG	3	3	AY.102	0.00008
ORF1ab/nsp1	32	G32R	Gga	Aga	3	3	AY.106	0.001005
ORF1ab/nsp1	32	G32G	ggA	ggG	3	3	AY.29.1	0.000662
ORF1ab/nsp1	32	G32V	gGa	gTa	3	3	AY.4	0.000005
ORF1ab/nsp1	32	G32R	Gga	Aga	2	3	AY.44	0.000012
ORF1ab/nsp1	32	G32R	Gga	Cga	1	3	AY.44	0.000006
ORF1ab/nsp1	32	G32E	gGa	gAa	3	3	AY.46.6	0.000217
ORF1ab/nsp1	32	G32R	Gga	Aga	3	3	AY.47	0.000093
ORF1ab/nsp1	32	G32V	gGa	gTa	3	3	B.1	0.000027
ORF1ab/nsp1	32	G32X	Gga	Tga	2	3	B.1	0.000018
ORF1ab/nsp1	32	G32X	GGa	TAa	1	3	B.1	0.000009
ORF1ab/nsp1	32	G32G	ggA	ggG	3	3	B.1.160	0.000094
ORF1ab/nsp1	32	G32G	ggA	ggC	2	3	B.1.177	0.000026
ORF1ab/nsp1	32	G32G	ggA	ggG	1	3	B.1.177	0.000013
ORF1ab/nsp1	32	G32G	ggA	ggG	2	3	B.1.177.73	0.001133
ORF1ab/nsp1	32	G32G	ggA	ggT	1	3	B.1.177.73	0.000566
ORF1ab/nsp1	32	G32V	gGa	gTa	3	3	B.1.2	0.000026
ORF1ab/nsp1	32	G32G	ggA	ggG	3	3	B.1.429	0.000071
ORF1ab/nsp1	32	G32R	Gga	Aga	2	3	B.1.617.2	0.000008
ORF1ab/nsp1	32	G32R	Gga	Cga	1	3	B.1.617.2	0.000004
ORF1ab/nsp1	32	G32del2	GGa	--a	1	2	All	0
ORF1ab/nsp1	32	G32del2	gGA	g--	1	2	All	0
ORF1ab/nsp1	32	G32G	ggA	ggG	2	2	AY.12	0.000632
ORF1ab/nsp1	32	G32R	Gga	Aga	2	2	AY.14	0.000176
ORF1ab/nsp1	32	G32R	Gga	Aga	2	2	AY.26	0.000057
ORF1ab/nsp1	32	G32del	GGA	---	2	2	AY.3	0.00002
ORF1ab/nsp1	32	G32del1	Gga	-ga	2	2	AY.44	0.000012
ORF1ab/nsp1	32	G32G	ggA	ggG	2	2	AY.5.4	0.000553
ORF1ab/nsp1	32	G32R	Gga	Aga	2	2	AY.9	0.000135
ORF1ab/nsp1	32	G32del	GGA	---	2	2	AY.9	0.000135
ORF1ab/nsp1	32	G32R	Gga	Aga	2	2	AY.92	0.000575
ORF1ab/nsp1	32	G32G	ggA	ggG	2	2	AY.99.2	0.000184
ORF1ab/nsp1	32	G32X	Gga	Tga	2	2	B	0.000256
ORF1ab/nsp1	32	G32G	ggA	ggG	2	2	B.1.1.161	0.007067
ORF1ab/nsp1	32	G32X	Gga	Tga	2	2	B.1.1.7	0.000002
ORF1ab/nsp1	32	G32del	GGA	---	2	2	B.1.177.18	0.00232
ORF1ab/nsp1	32	G32G	ggA	ggC	2	2	B.1.177.44	0.001038
ORF1ab/nsp1	32	G32R	Gga	Aga	2	2	B.1.221	0.000142
ORF1ab/nsp1	32	G32G	ggA	ggG	2	2	B.1.222	0.003384
ORF1ab/nsp1	32	G32del	GGA	---	2	2	B.1.36.17	0.000988
ORF1ab/nsp1	32	G32G	ggA	ggG	2	2	B.1.427	0.000101
ORF1ab/nsp1	32	G32G	ggA	ggG	2	2	B.1.468	0.011429
ORF1ab/nsp1	32	G32E	gGa	gAa	2	2	D.2	0.00015
ORF1ab/nsp1	32	G32del	GGA	---	2	2	N.4	0.008511
ORF1ab/nsp1	32	G32del	GGA	---	2	2	N.6	0.014184
ORF1ab/nsp1	32	G32del	GGA	---	2	2	P.2	0.000373
ORF1ab/nsp1	32	G32del	GGA	---	1	1	A	0.000387
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	A.1	0.000282
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	A.2	0.000662
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AD.2	0.000219
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AE.8	0.000489
ORF1ab/nsp1	32	G32D	gGA	gAT	1	1	All	0
ORF1ab/nsp1	32	G32K	GGA	AAG	1	1	All	0
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.111	0.000183
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AY.111	0.000183
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AY.114	0.000231
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.116	0.000287
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AY.116	0.000287
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AY.117	0.000085
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.12	0.000316
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	AY.120	0.000037
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.120	0.000037
ORF1ab/nsp1	32	G32E	gGa	gAa	1	1	AY.16.1	0.00047
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AY.20	0.000039
ORF1ab/nsp1	32	G32R	GgA	CgC	1	1	AY.23	0.00007
ORF1ab/nsp1	32	G32G	ggA	ggC	1	1	AY.24	0.000431
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AY.26	0.000028
ORF1ab/nsp1	32	G32E	gGa	gAa	1	1	AY.26	0.000028
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AY.27	0.000065
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	AY.29	0.000016
ORF1ab/nsp1	32	G32V	gGa	gTa	1	1	AY.29	0.000016
ORF1ab/nsp1	32	G32E	gGa	gAa	1	1	AY.3	0.00001
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	AY.3.1	0.000085
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.33	0.000067
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AY.34	0.000097
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AY.36	0.000148
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.38	0.000499
ORF1ab/nsp1	32	G32del1	Gga	-ga	1	1	AY.4	0.000002
ORF1ab/nsp1	32	G32del2	gGA	g--	1	1	AY.4	0.000002
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	AY.4.2	0.000022
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	AY.4.2.1	0.000149
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.4.4	0.000409
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	AY.4.4	0.000409
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.41	0.000294
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	AY.42	0.00004
ORF1ab/nsp1	32	G32del1	gGA	gA-	1	1	AY.43	0.000004
ORF1ab/nsp1	32	G32E	gGa	gAa	1	1	AY.44	0.000006
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.45	0.000122
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.46	0.000104
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AY.46.4	0.000165
ORF1ab/nsp1	32	G32V	gGa	gTa	1	1	AY.46.5	0.000198
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	AY.46.6	0.000072
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AY.46.6	0.000072
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.5	0.000021
ORF1ab/nsp1	32	G32E	gGa	gAa	1	1	AY.55	0.000917
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.6	0.000041
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.60	0.000938
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AY.64	0.000595
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AY.67	0.000464
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.68	0.000274
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AY.69	0.000187
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	AY.7.1	0.000113
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	AY.75.1	0.00018
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.75.1	0.00018
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AY.85	0.000427
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.9.1	0.000084
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.9.2	0.000037
ORF1ab/nsp1	32	G32G	ggA	ggC	1	1	AY.91	0.00073
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.94	0.000443
ORF1ab/nsp1	32	G32del	GGA	---	1	1	AY.95	0.000761
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AY.96	0.002075
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	AY.98	0.000079
ORF1ab/nsp1	32	G32E	gGa	gAa	1	1	AY.99.2	0.000092
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B	0.000128
ORF1ab/nsp1	32	G32E	gGa	gAa	1	1	B.1	0.000009
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	B.1	0.000009
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1	0.000009
ORF1ab/nsp1	32	G32X	Gga	Tga	1	1	B.1.1	0.000018
ORF1ab/nsp1	32	G32R	Gga	Cga	1	1	B.1.1	0.000018
ORF1ab/nsp1	32	G32E	gGa	gAa	1	1	B.1.1	0.000018
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	B.1.1.141	0.002012
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	B.1.1.216	0.00089
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.1.232	0.001815
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	B.1.1.240	0.004695
ORF1ab/nsp1	32	G32E	gGa	gAa	1	1	B.1.1.306	0.000438
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.1.311	0.000358
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.1.312	0.001912
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.1.322	0.008772
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.1.37	0.000193
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	B.1.1.388	0.045455
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.1.39	0.00051
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	B.1.1.434	0.000349
ORF1ab/nsp1	32	G32G	ggA	ggC	1	1	B.1.1.519	0.00004
ORF1ab/nsp1	32	G32G	ggA	ggC	1	1	B.1.1.70	0.000341
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.160	0.000031
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	B.1.160.33	0.004425
ORF1ab/nsp1	32	G32E	gGa	gAa	1	1	B.1.177	0.000013
ORF1ab/nsp1	32	G32V	gGa	gTa	1	1	B.1.177	0.000013
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.177.11	0.001698
ORF1ab/nsp1	32	G32del2	GGa	--a	1	1	B.1.177.16	0.000664
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	B.1.177.30	0.002513
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.177.51	0.004566
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.177.54	0.000606
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.177.57	0.000281
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.177.58	0.001332
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.177.69	0.001484
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	B.1.177.7	0.000165
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	B.1.177.81	0.000189
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.177.87	0.000728
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	B.1.177.87	0.000728
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.177.9	0.001332
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.2	0.000009
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	B.1.2	0.000009
ORF1ab/nsp1	32	G32E	gGa	gAa	1	1	B.1.2	0.000009
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.221.1	0.002907
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	B.1.258	0.000067
ORF1ab/nsp1	32	G32D	gGA	gAT	1	1	B.1.258	0.000067
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	B.1.351.2	0.000303
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	B.1.36	0.000146
ORF1ab/nsp1	32	G32E	gGa	gAa	1	1	B.1.36.1	0.00114
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.36.18	0.00042
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.427	0.00005
ORF1ab/nsp1	32	G32X	Gga	Tga	1	1	B.1.427	0.00005
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.429	0.000024
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	B.1.429	0.000024
ORF1ab/nsp1	32	G32G	ggA	ggT	1	1	B.1.499	0.00105
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	B.1.538	0.008065
ORF1ab/nsp1	32	G32X	GGa	TAa	1	1	B.1.538	0.008065
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	B.1.551	0.00129
ORF1ab/nsp1	32	G32R	Gga	Cga	1	1	B.1.596	0.000087
ORF1ab/nsp1	32	G32del	GGA	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	32	G32K	GGA	AAG	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	32	G32X	Gga	Tga	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	B.1.621	0.000089
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	B.1.621	0.000089
ORF1ab/nsp1	32	G32R	Gga	Cga	1	1	B.3	0.000831
ORF1ab/nsp1	32	G32E	gGa	gAa	1	1	B.40	0.000364
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	B.55	0.00295
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	B.6.6	0.000889
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	C.35	0.000774
ORF1ab/nsp1	32	G32del	GGA	---	1	1	C.35	0.000774
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	C.4	0.01
ORF1ab/nsp1	32	G32X	Gga	Tga	1	1	D.2	0.000075
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	D.2	0.000075
ORF1ab/nsp1	32	G32V	gGa	gTa	1	1	D.2	0.000075
ORF1ab/nsp1	32	G32R	Gga	Aga	1	1	P.1	0.000016
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	P.1.10	0.000269
ORF1ab/nsp1	32	G32E	gGa	gAa	1	1	P.1.10	0.000269
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	P.1.15	0.000232
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	Q.3	0.000145
ORF1ab/nsp1	32	G32G	ggA	ggG	1	1	R.1	0.00009
ORF1ab/nsp1	32	G32del	GGA	---	1	1	U.3	0.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.