CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 30 & Codon = gAc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp130G30DG30DnonsyngGcgAc3863850.997409353-355

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp130G30DgGcgAc385386All0.000074
ORF1ab/nsp130G30DgGcgAc8181AY.430.000359
ORF1ab/nsp130G30DgGcgAc7374AY.40.000114
ORF1ab/nsp130G30DgGcgAc4040A.10.011274
ORF1ab/nsp130G30DgGcgAc2727AY.9.20.000992
ORF1ab/nsp130G30DgGcgAc2525B.1.1.70.000022
ORF1ab/nsp130G30DgGcgAc1818B.1.1770.000237
ORF1ab/nsp130G30DgGcgAc1515AY.170.122951
ORF1ab/nsp130G30DgGcgAc1414AY.440.000085
ORF1ab/nsp130G30DgGcgAc1313AY.1030.000081
ORF1ab/nsp130G30DgGcgAc99B.1.617.20.000034
ORF1ab/nsp130G30DgGcgAc66AY.250.000036
ORF1ab/nsp130G30DgGcgAc55AY.4.20.000108
ORF1ab/nsp130G30DgGcgAc44AY.1020.000106
ORF1ab/nsp130G30DgGcgAc44AY.260.000113
ORF1ab/nsp130G30DgGcgAc44AY.30.00004
ORF1ab/nsp130G30DgGcgAc44AY.3.10.000341
ORF1ab/nsp130G30DgGcgAc44AY.39.10.000158
ORF1ab/nsp130G30DgGcgAc44AY.630.001547
ORF1ab/nsp130G30DgGcgAc44B.1.177.210.000306
ORF1ab/nsp130G30DgGcgAc33AY.750.000168
ORF1ab/nsp130G30DgGcgAc22AY.1200.000074
ORF1ab/nsp130G30DgGcgAc22AY.270.000129
ORF1ab/nsp130G30DgGcgAc22AY.450.000243
ORF1ab/nsp130G30DgGcgAc22B.1.1.3040.005618
ORF1ab/nsp130G30DgGcgAc22B.1.3510.000059
ORF1ab/nsp130G30DgGcgAc22P.10.000032
ORF1ab/nsp130G30DgGcgAc11AY.1010.00049
ORF1ab/nsp130G30DgGcgAc11AY.116.10.000311
ORF1ab/nsp130G30DgGcgAc11AY.130.000161
ORF1ab/nsp130G30DgGcgAc11AY.140.000088
ORF1ab/nsp130G30DgGcgAc11AY.460.000104
ORF1ab/nsp130G30DgGcgAc11AY.46.40.000165
ORF1ab/nsp130G30DgGcgAc11AY.470.000031
ORF1ab/nsp130G30DgGcgAc11AY.50.000021
ORF1ab/nsp130G30DgGcgAc11AY.670.000464
ORF1ab/nsp130G30DgGcgAc11AY.7.10.000113
ORF1ab/nsp130G30DgGcgAc11AY.860.00083
ORF1ab/nsp130G30DgGcgAc11B.1.1.10.000327
ORF1ab/nsp130G30DgGcgAc11B.1.1.3480.000796
ORF1ab/nsp130G30DgGcgAc11B.1.2210.000071
ORF1ab/nsp130G30DgGcgAc11B.1.9.50.005682
ORF1ab/nsp130G30DgGcgAc11C.36.30.000567

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.