CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 30

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp1	30	G30G	G30G	syn	ggC	ggT	3198	3096	0.968105	353-355
ORF1ab/nsp1	30	G30G	G30G	syn	ggC	ggA	3198	89	0.0278299	353-355
ORF1ab/nsp1	30	G30G	G30G	syn	ggC	ggG	3198	13	0.00406504	353-355
ORF1ab/nsp1	30	G30S	G30S	nonsyn	Ggc	Agc	709	709	1	353-355
ORF1ab/nsp1	30	G30D	G30D	nonsyn	gGc	gAc	386	385	0.997409	353-355
ORF1ab/nsp1	30	G30D	G30D	nonsyn	gGC	gAT	386	1	0.00259067	353-355
ORF1ab/nsp1	30	G30V	G30V	nonsyn	gGc	gTc	184	183	0.994565	353-355
ORF1ab/nsp1	30	G30V	G30V	nonsyn	gGC	gTT	184	1	0.00543478	353-355
ORF1ab/nsp1	30	G30A	G30A	nonsyn	gGc	gCc	175	174	0.994286	353-355
ORF1ab/nsp1	30	G30A	G30A	nonsyn	gGC	gCA	175	1	0.00571429	353-355
ORF1ab/nsp1	30	G30C	G30C	nonsyn	Ggc	Tgc	153	153	1	353-355
ORF1ab/nsp1	30	G30del	G30del	del	GGC	---	150	150	1	353-355
ORF1ab/nsp1	30	G30del2	G30del2	del	gGC	g--	3	3	1	353-355
ORF1ab/nsp1	30	G30R	G30R	nonsyn	Ggc	Cgc	2	2	1	353-355
ORF1ab/nsp1	30	G30L	G30L	nonsyn	GGc	CTc	2	2	1	353-355
ORF1ab/nsp1	30	G30del1	G30del1	del	ggC	gg-	1	1	1	353-355
ORF1ab/nsp1	30	G30T	G30T	nonsyn	GGc	ACc	1	1	1	353-355

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp1	30	G30G	ggC	ggT	3096	3198	All	0.000592
ORF1ab/nsp1	30	G30G	ggC	ggA	89	3198	All	0.000017
ORF1ab/nsp1	30	G30G	ggC	ggG	13	3198	All	0.000002
ORF1ab/nsp1	30	G30G	ggC	ggT	965	972	AY.4	0.001502
ORF1ab/nsp1	30	G30G	ggC	ggA	7	972	AY.4	0.000011
ORF1ab/nsp1	30	G30S	Ggc	Agc	709	709	All	0.000136
ORF1ab/nsp1	30	G30G	ggC	ggT	353	387	B.1.1.7	0.000316
ORF1ab/nsp1	30	G30G	ggC	ggA	34	387	B.1.1.7	0.00003
ORF1ab/nsp1	30	G30D	gGc	gAc	385	386	All	0.000074
ORF1ab/nsp1	30	G30D	gGC	gAT	1	386	All	0
ORF1ab/nsp1	30	G30S	Ggc	Agc	340	340	B.1	0.003114
ORF1ab/nsp1	30	G30G	ggC	ggT	234	237	B.1.617.2	0.000881
ORF1ab/nsp1	30	G30G	ggC	ggA	3	237	B.1.617.2	0.000011
ORF1ab/nsp1	30	G30G	ggC	ggT	234	234	B.1.429	0.005506
ORF1ab/nsp1	30	G30G	ggC	ggT	201	201	D.5	1
ORF1ab/nsp1	30	G30V	gGc	gTc	183	184	All	0.000035
ORF1ab/nsp1	30	G30V	gGC	gTT	1	184	All	0
ORF1ab/nsp1	30	G30A	gGc	gCc	174	175	All	0.000033
ORF1ab/nsp1	30	G30A	gGC	gCA	1	175	All	0
ORF1ab/nsp1	30	G30C	Ggc	Tgc	153	153	All	0.000029
ORF1ab/nsp1	30	G30del	GGC	---	150	150	All	0.000029
ORF1ab/nsp1	30	G30G	ggC	ggT	126	126	B.1.381	0.984375
ORF1ab/nsp1	30	G30G	ggC	ggT	126	126	B.1.637	0.009207
ORF1ab/nsp1	30	G30A	gGc	gCc	108	108	B.1.1.159	0.504673
ORF1ab/nsp1	30	G30D	gGc	gAc	81	81	AY.43	0.000359
ORF1ab/nsp1	30	G30D	gGc	gAc	73	74	AY.4	0.000114
ORF1ab/nsp1	30	G30D	gGC	gAT	1	74	AY.4	0.000002
ORF1ab/nsp1	30	G30S	Ggc	Agc	71	71	B.1.1.7	0.000064
ORF1ab/nsp1	30	G30G	ggC	ggT	42	53	B.1.2	0.00037
ORF1ab/nsp1	30	G30G	ggC	ggG	11	53	B.1.2	0.000097
ORF1ab/nsp1	30	G30G	ggC	ggT	51	52	AY.102	0.001352
ORF1ab/nsp1	30	G30G	ggC	ggA	1	52	AY.102	0.000027
ORF1ab/nsp1	30	G30C	Ggc	Tgc	51	51	B.1.2	0.000449
ORF1ab/nsp1	30	G30G	ggC	ggT	46	46	B.1.1.214	0.002551
ORF1ab/nsp1	30	G30del	GGC	---	41	41	B.1.1.7	0.000037
ORF1ab/nsp1	30	G30G	ggC	ggT	41	41	B.1.351	0.001219
ORF1ab/nsp1	30	G30D	gGc	gAc	40	40	A.1	0.011274
ORF1ab/nsp1	30	G30G	ggC	ggT	40	40	P.1.10	0.010779
ORF1ab/nsp1	30	G30G	ggC	ggT	35	37	B.1	0.000321
ORF1ab/nsp1	30	G30G	ggC	ggA	2	37	B.1	0.000018
ORF1ab/nsp1	30	G30V	gGc	gTc	35	35	AY.4	0.000054
ORF1ab/nsp1	30	G30C	Ggc	Tgc	33	33	AY.4	0.000051
ORF1ab/nsp1	30	G30G	ggC	ggT	16	29	AY.25	0.000096
ORF1ab/nsp1	30	G30G	ggC	ggA	13	29	AY.25	0.000078
ORF1ab/nsp1	30	G30G	ggC	ggT	29	29	AY.44	0.000177
ORF1ab/nsp1	30	G30G	ggC	ggT	29	29	Q.3	0.004206
ORF1ab/nsp1	30	G30S	Ggc	Agc	27	27	AY.25	0.000162
ORF1ab/nsp1	30	G30G	ggC	ggT	26	27	AY.9	0.001757
ORF1ab/nsp1	30	G30G	ggC	ggG	1	27	AY.9	0.000068
ORF1ab/nsp1	30	G30D	gGc	gAc	27	27	AY.9.2	0.000992
ORF1ab/nsp1	30	G30C	Ggc	Tgc	27	27	B.1.1.7	0.000024
ORF1ab/nsp1	30	G30G	ggC	ggT	26	26	AY.3	0.000259
ORF1ab/nsp1	30	G30D	gGc	gAc	25	25	B.1.1.7	0.000022
ORF1ab/nsp1	30	G30V	gGc	gTc	24	24	B.1.1.7	0.000021
ORF1ab/nsp1	30	G30V	gGc	gTc	22	22	B.1.617.2	0.000083
ORF1ab/nsp1	30	G30G	ggC	ggT	21	21	AY.39	0.000519
ORF1ab/nsp1	30	G30S	Ggc	Agc	20	20	AY.4	0.000031
ORF1ab/nsp1	30	G30G	ggC	ggT	18	19	B.1.177	0.000237
ORF1ab/nsp1	30	G30G	ggC	ggA	1	19	B.1.177	0.000013
ORF1ab/nsp1	30	G30S	Ggc	Agc	18	18	AY.103	0.000112
ORF1ab/nsp1	30	G30D	gGc	gAc	18	18	B.1.177	0.000237
ORF1ab/nsp1	30	G30G	ggC	ggT	18	18	B.1.311	0.004942
ORF1ab/nsp1	30	G30V	gGc	gTc	17	17	AY.100	0.000782
ORF1ab/nsp1	30	G30G	ggC	ggT	17	17	AY.43	0.000075
ORF1ab/nsp1	30	G30S	Ggc	Agc	17	17	B.1.2	0.00015
ORF1ab/nsp1	30	G30V	gGc	gTc	16	16	AY.25	0.000096
ORF1ab/nsp1	30	G30del	GGC	---	16	16	AY.4	0.000025
ORF1ab/nsp1	30	G30S	Ggc	Agc	16	16	AY.43	0.000071
ORF1ab/nsp1	30	G30S	Ggc	Agc	16	16	B.1.429	0.000376
ORF1ab/nsp1	30	G30D	gGc	gAc	15	15	AY.17	0.122951
ORF1ab/nsp1	30	G30G	ggC	ggT	13	14	AY.103	0.000081
ORF1ab/nsp1	30	G30G	ggC	ggA	1	14	AY.103	0.000006
ORF1ab/nsp1	30	G30G	ggC	ggT	14	14	AY.33	0.000935
ORF1ab/nsp1	30	G30D	gGc	gAc	14	14	AY.44	0.000085
ORF1ab/nsp1	30	G30A	gGc	gCc	14	14	B.1.1.7	0.000013
ORF1ab/nsp1	30	G30G	ggC	ggT	14	14	P.1	0.000221
ORF1ab/nsp1	30	G30G	ggC	ggT	14	14	Q.1	0.001769
ORF1ab/nsp1	30	G30D	gGc	gAc	13	13	AY.103	0.000081
ORF1ab/nsp1	30	G30S	Ggc	Agc	13	13	B.1.243	0.000905
ORF1ab/nsp1	30	G30G	ggC	ggT	13	13	P.1.17	0.002103
ORF1ab/nsp1	30	G30S	Ggc	Agc	12	12	B.1.351	0.000357
ORF1ab/nsp1	30	G30G	ggC	ggT	11	11	B.1.1.448	0.022358
ORF1ab/nsp1	30	G30G	ggC	ggT	11	11	B.1.526	0.000259
ORF1ab/nsp1	30	G30S	Ggc	Agc	11	11	B.1.526	0.000259
ORF1ab/nsp1	30	G30G	ggC	ggT	7	10	AY.4.2	0.000152
ORF1ab/nsp1	30	G30G	ggC	ggA	3	10	AY.4.2	0.000065
ORF1ab/nsp1	30	G30G	ggC	ggT	9	10	B.1.160	0.000281
ORF1ab/nsp1	30	G30G	ggC	ggA	1	10	B.1.160	0.000031
ORF1ab/nsp1	30	G30G	ggC	ggT	10	10	B.1.221	0.00071
ORF1ab/nsp1	30	G30A	gGc	gCc	10	10	U.2	0.087719
ORF1ab/nsp1	30	G30del	GGC	---	9	9	AY.23	0.000628
ORF1ab/nsp1	30	G30V	gGc	gTc	9	9	AY.44	0.000055
ORF1ab/nsp1	30	G30G	ggC	ggT	9	9	AY.98	0.000711
ORF1ab/nsp1	30	G30G	ggC	ggT	9	9	B.1.1	0.000163
ORF1ab/nsp1	30	G30S	Ggc	Agc	9	9	B.1.617.2	0.000034
ORF1ab/nsp1	30	G30D	gGc	gAc	9	9	B.1.617.2	0.000034
ORF1ab/nsp1	30	G30C	Ggc	Tgc	8	8	AY.43	0.000035
ORF1ab/nsp1	30	G30G	ggC	ggT	7	8	AY.47	0.000218
ORF1ab/nsp1	30	G30G	ggC	ggA	1	8	AY.47	0.000031
ORF1ab/nsp1	30	G30S	Ggc	Agc	8	8	AY.98.1	0.000387
ORF1ab/nsp1	30	G30G	ggC	ggT	8	8	B.1.177.81	0.001515
ORF1ab/nsp1	30	G30G	ggC	ggT	7	7	AY.113	0.000997
ORF1ab/nsp1	30	G30G	ggC	ggT	7	7	AY.118	0.000439
ORF1ab/nsp1	30	G30G	ggC	ggT	7	7	AY.119	0.000247
ORF1ab/nsp1	30	G30V	gGc	gTc	7	7	AY.39	0.000173
ORF1ab/nsp1	30	G30G	ggC	ggT	7	7	AY.42	0.000282
ORF1ab/nsp1	30	G30del	GGC	---	7	7	AY.43	0.000031
ORF1ab/nsp1	30	G30G	ggC	ggA	7	7	P.1.14	0.000335
ORF1ab/nsp1	30	G30G	ggC	ggT	7	7	R.1	0.00063
ORF1ab/nsp1	30	G30S	Ggc	Agc	6	6	AY.109	0.004438
ORF1ab/nsp1	30	G30D	gGc	gAc	6	6	AY.25	0.000036
ORF1ab/nsp1	30	G30V	gGc	gTc	6	6	AY.29	0.000095
ORF1ab/nsp1	30	G30S	Ggc	Agc	6	6	AY.3	0.00006
ORF1ab/nsp1	30	G30G	ggC	ggT	5	6	AY.98.1	0.000242
ORF1ab/nsp1	30	G30G	ggC	ggA	1	6	AY.98.1	0.000048
ORF1ab/nsp1	30	G30G	ggC	ggT	6	6	B.1.1.284	0.000644
ORF1ab/nsp1	30	G30G	ggC	ggT	6	6	B.1.1.519	0.000238
ORF1ab/nsp1	30	G30del	GGC	---	6	6	B.1.177	0.000079
ORF1ab/nsp1	30	G30G	ggC	ggT	6	6	B.1.417	0.171429
ORF1ab/nsp1	30	G30G	ggC	ggT	6	6	Q.4	0.002729
ORF1ab/nsp1	30	G30G	ggC	ggT	5	5	AY.114	0.001156
ORF1ab/nsp1	30	G30S	Ggc	Agc	5	5	AY.29	0.000079
ORF1ab/nsp1	30	G30G	ggC	ggT	5	5	AY.36	0.000741
ORF1ab/nsp1	30	G30D	gGc	gAc	5	5	AY.4.2	0.000108
ORF1ab/nsp1	30	G30S	Ggc	Agc	5	5	AY.47	0.000156
ORF1ab/nsp1	30	G30G	ggC	ggT	5	5	B.1.427	0.000252
ORF1ab/nsp1	30	G30A	gGc	gCc	5	5	B.1.517	0.002135
ORF1ab/nsp1	30	G30G	ggC	ggT	4	5	P.2	0.000747
ORF1ab/nsp1	30	G30G	ggC	ggA	1	5	P.2	0.000187
ORF1ab/nsp1	30	G30S	Ggc	Agc	4	4	AB.1	0.032787
ORF1ab/nsp1	30	G30D	gGc	gAc	4	4	AY.102	0.000106
ORF1ab/nsp1	30	G30G	ggC	ggT	4	4	AY.117	0.000338
ORF1ab/nsp1	30	G30G	ggC	ggT	4	4	AY.20	0.000155
ORF1ab/nsp1	30	G30A	gGc	gCc	4	4	AY.25	0.000024
ORF1ab/nsp1	30	G30D	gGc	gAc	4	4	AY.26	0.000113
ORF1ab/nsp1	30	G30D	gGc	gAc	4	4	AY.3	0.00004
ORF1ab/nsp1	30	G30D	gGc	gAc	4	4	AY.3.1	0.000341
ORF1ab/nsp1	30	G30G	ggC	ggT	4	4	AY.39.1	0.000158
ORF1ab/nsp1	30	G30D	gGc	gAc	4	4	AY.39.1	0.000158
ORF1ab/nsp1	30	G30S	Ggc	Agc	4	4	AY.4.2	0.000087
ORF1ab/nsp1	30	G30del	GGC	---	4	4	AY.4.5	0.00043
ORF1ab/nsp1	30	G30V	gGc	gTc	4	4	AY.43	0.000018
ORF1ab/nsp1	30	G30G	ggC	ggT	4	4	AY.46	0.000416
ORF1ab/nsp1	30	G30D	gGc	gAc	4	4	AY.63	0.001547
ORF1ab/nsp1	30	G30G	ggC	ggT	4	4	AY.75	0.000224
ORF1ab/nsp1	30	G30G	ggC	ggT	4	4	AY.9.1	0.000335
ORF1ab/nsp1	30	G30G	ggC	ggT	3	4	B	0.000383
ORF1ab/nsp1	30	G30G	ggC	ggA	1	4	B	0.000128
ORF1ab/nsp1	30	G30del	GGC	---	4	4	B.1.1.33	0.001684
ORF1ab/nsp1	30	G30del	GGC	---	4	4	B.1.1.348	0.003185
ORF1ab/nsp1	30	G30A	gGc	gCc	4	4	B.1.1.434	0.001394
ORF1ab/nsp1	30	G30S	Ggc	Agc	4	4	B.1.177	0.000053
ORF1ab/nsp1	30	G30D	gGc	gAc	4	4	B.1.177.21	0.000306
ORF1ab/nsp1	30	G30S	Ggc	Agc	4	4	B.1.177.50	0.018779
ORF1ab/nsp1	30	G30G	ggC	ggT	4	4	B.1.177.57	0.001124
ORF1ab/nsp1	30	G30S	Ggc	Agc	4	4	B.1.221	0.000284
ORF1ab/nsp1	30	G30G	ggC	ggT	2	4	B.1.243	0.000139
ORF1ab/nsp1	30	G30G	ggC	ggA	1	4	B.1.243	0.00007
ORF1ab/nsp1	30	G30G	ggC	ggG	1	4	B.1.243	0.00007
ORF1ab/nsp1	30	G30G	ggC	ggT	4	4	B.1.396	0.002823
ORF1ab/nsp1	30	G30G	ggC	ggA	3	4	B.1.596	0.000261
ORF1ab/nsp1	30	G30G	ggC	ggT	1	4	B.1.596	0.000087
ORF1ab/nsp1	30	G30S	Ggc	Agc	4	4	B.1.621	0.000354
ORF1ab/nsp1	30	G30del2	gGC	g--	3	3	All	0.000001
ORF1ab/nsp1	30	G30V	gGc	gTc	3	3	AY.103	0.000019
ORF1ab/nsp1	30	G30G	ggC	ggT	3	3	AY.106	0.001005
ORF1ab/nsp1	30	G30S	Ggc	Agc	3	3	AY.118	0.000188
ORF1ab/nsp1	30	G30G	ggC	ggT	3	3	AY.120	0.000112
ORF1ab/nsp1	30	G30V	gGc	gTc	3	3	AY.121	0.000406
ORF1ab/nsp1	30	G30del	GGC	---	3	3	AY.25	0.000018
ORF1ab/nsp1	30	G30S	Ggc	Agc	3	3	AY.26	0.000085
ORF1ab/nsp1	30	G30G	ggC	ggT	3	3	AY.29.1	0.000662
ORF1ab/nsp1	30	G30S	Ggc	Agc	3	3	AY.39	0.000074
ORF1ab/nsp1	30	G30S	Ggc	Agc	3	3	AY.44	0.000018
ORF1ab/nsp1	30	G30A	gGc	gCc	3	3	AY.44	0.000018
ORF1ab/nsp1	30	G30S	Ggc	Agc	3	3	AY.46	0.000312
ORF1ab/nsp1	30	G30G	ggC	ggT	3	3	AY.5	0.000062
ORF1ab/nsp1	30	G30G	ggC	ggT	3	3	AY.5.3	0.001012
ORF1ab/nsp1	30	G30D	gGc	gAc	3	3	AY.75	0.000168
ORF1ab/nsp1	30	G30G	ggC	ggT	3	3	AY.79	0.003632
ORF1ab/nsp1	30	G30A	gGc	gCc	3	3	B.1.1	0.000054
ORF1ab/nsp1	30	G30S	Ggc	Agc	3	3	B.1.1	0.000054
ORF1ab/nsp1	30	G30G	ggC	ggT	2	3	B.1.1.216	0.001781
ORF1ab/nsp1	30	G30G	ggC	ggA	1	3	B.1.1.216	0.00089
ORF1ab/nsp1	30	G30S	Ggc	Agc	3	3	B.1.1.486	0.004732
ORF1ab/nsp1	30	G30S	Ggc	Agc	3	3	B.1.1.500	0.06
ORF1ab/nsp1	30	G30del2	gGC	g--	3	3	B.1.1.7	0.000003
ORF1ab/nsp1	30	G30G	ggC	ggT	3	3	B.1.111	0.003525
ORF1ab/nsp1	30	G30S	Ggc	Agc	3	3	B.1.147	0.002268
ORF1ab/nsp1	30	G30S	Ggc	Agc	3	3	B.1.160	0.000094
ORF1ab/nsp1	30	G30S	Ggc	Agc	3	3	B.1.36	0.000438
ORF1ab/nsp1	30	G30G	ggC	ggT	3	3	B.1.525	0.000339
ORF1ab/nsp1	30	G30G	ggC	ggT	3	3	B.1.582	0.001472
ORF1ab/nsp1	30	G30S	Ggc	Agc	3	3	B.1.631	0.010101
ORF1ab/nsp1	30	G30G	ggC	ggT	3	3	P.1.15	0.000697
ORF1ab/nsp1	30	G30R	Ggc	Cgc	2	2	All	0
ORF1ab/nsp1	30	G30L	GGc	CTc	2	2	All	0
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	AY.100	0.000092
ORF1ab/nsp1	30	G30A	gGc	gCc	2	2	AY.103	0.000012
ORF1ab/nsp1	30	G30D	gGc	gAc	2	2	AY.120	0.000074
ORF1ab/nsp1	30	G30G	ggC	ggA	2	2	AY.23	0.000139
ORF1ab/nsp1	30	G30A	gGc	gCc	1	2	AY.23	0.00007
ORF1ab/nsp1	30	G30A	gGC	gCA	1	2	AY.23	0.00007
ORF1ab/nsp1	30	G30D	gGc	gAc	2	2	AY.27	0.000129
ORF1ab/nsp1	30	G30S	Ggc	Agc	2	2	AY.3.1	0.000171
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	AY.3.1	0.000171
ORF1ab/nsp1	30	G30S	Ggc	Agc	2	2	AY.33	0.000134
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	AY.34.1	0.00102
ORF1ab/nsp1	30	G30A	gGc	gCc	2	2	AY.4	0.000003
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	AY.4.3	0.001684
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	AY.4.5	0.000215
ORF1ab/nsp1	30	G30D	gGc	gAc	2	2	AY.45	0.000243
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	AY.45	0.000243
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	AY.46.4	0.000329
ORF1ab/nsp1	30	G30S	Ggc	Agc	2	2	AY.46.4	0.000329
ORF1ab/nsp1	30	G30C	Ggc	Tgc	2	2	AY.69	0.000373
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	AY.70	0.000417
ORF1ab/nsp1	30	G30G	ggC	ggA	2	2	AY.71	0.00095
ORF1ab/nsp1	30	G30V	gGc	gTc	2	2	AY.9.2	0.000073
ORF1ab/nsp1	30	G30A	gGc	gCc	2	2	B.1	0.000018
ORF1ab/nsp1	30	G30V	gGc	gTc	2	2	B.1.1	0.000036
ORF1ab/nsp1	30	G30C	Ggc	Tgc	2	2	B.1.1.141	0.004024
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	B.1.1.220	0.003717
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	B.1.1.28	0.000622
ORF1ab/nsp1	30	G30D	gGc	gAc	2	2	B.1.1.304	0.005618
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	B.1.1.351	0.005587
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	B.1.1.482	0.046512
ORF1ab/nsp1	30	G30V	gGc	gTc	2	2	B.1.1.519	0.000079
ORF1ab/nsp1	30	G30S	Ggc	Agc	2	2	B.1.139	0.001466
ORF1ab/nsp1	30	G30C	Ggc	Tgc	2	2	B.1.177	0.000026
ORF1ab/nsp1	30	G30del	GGC	---	2	2	B.1.177.18	0.00232
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	B.1.177.41	0.005
ORF1ab/nsp1	30	G30C	Ggc	Tgc	2	2	B.1.177.81	0.000379
ORF1ab/nsp1	30	G30V	gGc	gTc	2	2	B.1.2	0.000018
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	B.1.235	0.005038
ORF1ab/nsp1	30	G30A	gGc	gCc	2	2	B.1.258	0.000133
ORF1ab/nsp1	30	G30S	Ggc	Agc	2	2	B.1.258	0.000133
ORF1ab/nsp1	30	G30D	gGc	gAc	2	2	B.1.351	0.000059
ORF1ab/nsp1	30	G30S	Ggc	Agc	2	2	B.1.411	0.007407
ORF1ab/nsp1	30	G30S	Ggc	Agc	2	2	B.1.420	0.020833
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	B.1.509	0.001732
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	B.1.524	0.002813
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	B.1.534	0.025
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	B.1.595	0.000522
ORF1ab/nsp1	30	G30C	Ggc	Tgc	2	2	B.1.617.2	0.000008
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	B.1.625	0.004706
ORF1ab/nsp1	30	G30G	ggC	ggT	2	2	C.37.1	0.005236
ORF1ab/nsp1	30	G30del	GGC	---	2	2	N.4	0.008511
ORF1ab/nsp1	30	G30del	GGC	---	2	2	N.6	0.014184
ORF1ab/nsp1	30	G30V	gGc	gTc	2	2	P.1	0.000032
ORF1ab/nsp1	30	G30D	gGc	gAc	2	2	P.1	0.000032
ORF1ab/nsp1	30	G30del	GGC	---	2	2	P.2	0.000373
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	A	0.000387
ORF1ab/nsp1	30	G30del	GGC	---	1	1	A	0.000387
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	A.2.5	0.000499
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	A.2.5	0.000499
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	A.29	0.005319
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AD.2	0.000219
ORF1ab/nsp1	30	G30del1	ggC	gg-	1	1	All	0
ORF1ab/nsp1	30	G30T	GGc	ACc	1	1	All	0
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AW.1	0.003049
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	AY.100	0.000046
ORF1ab/nsp1	30	G30D	gGc	gAc	1	1	AY.101	0.00049
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	AY.102	0.000027
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	AY.102	0.000027
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	AY.105	0.000643
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.110	0.000113
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	AY.111	0.000183
ORF1ab/nsp1	30	G30G	ggC	ggA	1	1	AY.111	0.000183
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	AY.113	0.000142
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.116	0.000287
ORF1ab/nsp1	30	G30D	gGc	gAc	1	1	AY.116.1	0.000311
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	AY.117	0.000085
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	AY.119	0.000035
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	AY.119	0.000035
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.12	0.000316
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	AY.12	0.000316
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	AY.120	0.000037
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	AY.120	0.000037
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.120	0.000037
ORF1ab/nsp1	30	G30A	gGc	gCc	1	1	AY.120	0.000037
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.121	0.000135
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	AY.121	0.000135
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	AY.121	0.000135
ORF1ab/nsp1	30	G30D	gGc	gAc	1	1	AY.13	0.000161
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.13	0.000161
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	AY.13	0.000161
ORF1ab/nsp1	30	G30D	gGc	gAc	1	1	AY.14	0.000088
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	AY.20	0.000039
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	AY.23	0.00007
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	AY.23	0.00007
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	AY.25	0.000006
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	AY.26	0.000028
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.26	0.000028
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	AY.27	0.000065
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.29	0.000016
ORF1ab/nsp1	30	G30A	gGc	gCc	1	1	AY.29	0.000016
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	AY.3	0.00001
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.3	0.00001
ORF1ab/nsp1	30	G30A	gGc	gCc	1	1	AY.3.1	0.000085
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	AY.30	0.000396
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.33	0.000067
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	AY.34	0.000097
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.35	0.000233
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	AY.36	0.000148
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	AY.36	0.000148
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	AY.36	0.000148
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.37	0.000316
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.38	0.000499
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	AY.39.1	0.00004
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.4.1	0.000737
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.4.2.1	0.000149
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.4.4	0.000409
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.4.4	0.000409
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	AY.4.5	0.000107
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	AY.40	0.000964
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.41	0.000294
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	AY.42	0.00004
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.45	0.000122
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.46	0.000104
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	AY.46	0.000104
ORF1ab/nsp1	30	G30D	gGc	gAc	1	1	AY.46	0.000104
ORF1ab/nsp1	30	G30D	gGc	gAc	1	1	AY.46.4	0.000165
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	AY.46.5	0.000198
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	AY.46.5	0.000198
ORF1ab/nsp1	30	G30A	gGc	gCc	1	1	AY.47	0.000031
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	AY.47	0.000031
ORF1ab/nsp1	30	G30D	gGc	gAc	1	1	AY.47	0.000031
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.5	0.000021
ORF1ab/nsp1	30	G30D	gGc	gAc	1	1	AY.5	0.000021
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.53	0.000288
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	AY.54	0.000095
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.58	0.000907
ORF1ab/nsp1	30	G30A	gGc	gCc	1	1	AY.6	0.000041
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.6	0.000041
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	AY.6	0.000041
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	AY.6	0.000041
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.60	0.000938
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.61	0.000105
ORF1ab/nsp1	30	G30G	ggC	ggA	1	1	AY.63	0.000387
ORF1ab/nsp1	30	G30D	gGc	gAc	1	1	AY.67	0.000464
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.68	0.000274
ORF1ab/nsp1	30	G30D	gGc	gAc	1	1	AY.7.1	0.000113
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.7.2	0.000559
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.73	0.000665
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	AY.75	0.000056
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.75.1	0.00018
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.77	0.001127
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.8	0.000606
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.85	0.000427
ORF1ab/nsp1	30	G30D	gGc	gAc	1	1	AY.86	0.00083
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.86	0.00083
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.87	0.000833
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	AY.88	0.000884
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.9	0.000068
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	AY.9	0.000068
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.9.1	0.000084
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.9.2	0.000037
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.94	0.000443
ORF1ab/nsp1	30	G30del	GGC	---	1	1	AY.95	0.000761
ORF1ab/nsp1	30	G30A	gGc	gCc	1	1	AY.98.1	0.000048
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	AY.99.2	0.000092
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B	0.000128
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	B	0.000128
ORF1ab/nsp1	30	G30del1	ggC	gg-	1	1	B.1	0.000009
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1	0.000009
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	B.1	0.000009
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	B.1	0.000009
ORF1ab/nsp1	30	G30R	Ggc	Cgc	1	1	B.1	0.000009
ORF1ab/nsp1	30	G30L	GGc	CTc	1	1	B.1	0.000009
ORF1ab/nsp1	30	G30T	GGc	ACc	1	1	B.1	0.000009
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.1.1	0.000327
ORF1ab/nsp1	30	G30D	gGc	gAc	1	1	B.1.1.1	0.000327
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	B.1.1.141	0.002012
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	B.1.1.157	0.000913
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	B.1.1.174	0.003378
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.1.232	0.001815
ORF1ab/nsp1	30	G30A	gGc	gCc	1	1	B.1.1.284	0.000107
ORF1ab/nsp1	30	G30G	ggC	ggA	1	1	B.1.1.286	0.002899
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	B.1.1.288	0.001916
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.1.289	0.002083
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.1.294	0.001266
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	B.1.1.306	0.000438
ORF1ab/nsp1	30	G30A	gGc	gCc	1	1	B.1.1.306	0.000438
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.1.306	0.000438
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.1.311	0.000358
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.1.311	0.000358
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.1.322	0.008772
ORF1ab/nsp1	30	G30D	gGc	gAc	1	1	B.1.1.348	0.000796
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.1.37	0.000193
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.1.39	0.00051
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	B.1.1.397	0.002252
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.1.398	0.003226
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.1.416	0.000905
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.1.420	0.001006
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	B.1.1.519	0.00004
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.1.70	0.000341
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	B.1.1.70	0.000341
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	B.1.127	0.002198
ORF1ab/nsp1	30	G30A	gGc	gCc	1	1	B.1.160	0.000031
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.160	0.000031
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.160.30	0.002976
ORF1ab/nsp1	30	G30A	gGc	gCc	1	1	B.1.177	0.000013
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	B.1.177	0.000013
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.177.11	0.001698
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	B.1.177.21	0.000076
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.177.44	0.000519
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.177.51	0.004566
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.177.54	0.000606
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	B.1.177.57	0.000281
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	B.1.177.57	0.000281
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.177.57	0.000281
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.177.58	0.001332
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.177.58	0.001332
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	B.1.177.60	0.000218
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.177.69	0.001484
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.177.7	0.000165
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.177.86	0.000183
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.177.87	0.000728
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.177.9	0.001332
ORF1ab/nsp1	30	G30A	gGc	gCc	1	1	B.1.2	0.000009
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.2	0.000009
ORF1ab/nsp1	30	G30D	gGc	gAc	1	1	B.1.221	0.000071
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.221.1	0.002907
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.236	0.002053
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	B.1.237	0.004975
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	B.1.239	0.001221
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	B.1.243	0.00007
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.258	0.000067
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	B.1.258.17	0.000104
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	B.1.323	0.020833
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.351.3	0.000876
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.356	0.001727
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.36.17	0.000494
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.36.18	0.00042
ORF1ab/nsp1	30	G30A	gGc	gCc	1	1	B.1.36.8	0.001
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	B.1.369	0.000285
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.375	0.00082
ORF1ab/nsp1	30	G30V	gGC	gTT	1	1	B.1.381	0.007812
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.409	0.000781
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.422	0.000812
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	B.1.427	0.00005
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	B.1.427	0.00005
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.427	0.00005
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	B.1.428	0.00102
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.429	0.000024
ORF1ab/nsp1	30	G30V	gGc	gTc	1	1	B.1.441	0.009615
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.466.2	0.000391
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.487	0.019608
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	B.1.495	0.009091
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.499	0.00105
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	B.1.526	0.000024
ORF1ab/nsp1	30	G30L	GGc	CTc	1	1	B.1.538	0.008065
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.567	0.003333
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.588	0.00091
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	B.1.589	0.007576
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	B.1.593	0.01087
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	B.1.617.1	0.000129
ORF1ab/nsp1	30	G30del	GGC	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	30	G30A	gGc	gCc	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.621	0.000089
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.632	0.006711
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	B.1.634	0.003425
ORF1ab/nsp1	30	G30D	gGc	gAc	1	1	B.1.9.5	0.005682
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	B.1.93	0.000934
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	C.1	0.002392
ORF1ab/nsp1	30	G30del	GGC	---	1	1	C.35	0.000774
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	C.35	0.000774
ORF1ab/nsp1	30	G30D	gGc	gAc	1	1	C.36.3	0.000567
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	C.37	0.000116
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	D.2	0.000075
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	P.1	0.000016
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	P.1	0.000016
ORF1ab/nsp1	30	G30A	gGc	gCc	1	1	P.1	0.000016
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	P.1.1	0.000318
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	P.1.12	0.000484
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	P.1.14	0.000048
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	P.1.16	0.000374
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	P.1.2	0.001156
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	P.1.7	0.000319
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	P.2	0.000187
ORF1ab/nsp1	30	G30C	Ggc	Tgc	1	1	Q.1	0.000126
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	Q.4	0.000455
ORF1ab/nsp1	30	G30S	Ggc	Agc	1	1	Q.8	0.000165
ORF1ab/nsp1	30	G30G	ggC	ggT	1	1	Q.8	0.000165
ORF1ab/nsp1	30	G30R	Ggc	Cgc	1	1	R.1	0.00009
ORF1ab/nsp1	30	G30del	GGC	---	1	1	U.3	0.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.