CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 3 & Codon = aTc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13S3IS3InonsynaGcaTc52521272-274

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13S3IaGcaTc5252All0.00001
ORF1ab/nsp13S3IaGcaTc88AY.40.000012
ORF1ab/nsp13S3IaGcaTc66AY.250.000036
ORF1ab/nsp13S3IaGcaTc66B.1.1.70.000005
ORF1ab/nsp13S3IaGcaTc66B.1.617.20.000023
ORF1ab/nsp13S3IaGcaTc44AY.440.000024
ORF1ab/nsp13S3IaGcaTc44AY.60.000165
ORF1ab/nsp13S3IaGcaTc22AY.20.000712
ORF1ab/nsp13S3IaGcaTc22B0.000256
ORF1ab/nsp13S3IaGcaTc22B.10.000018
ORF1ab/nsp13S3IaGcaTc11AY.1020.000027
ORF1ab/nsp13S3IaGcaTc11AY.1030.000006
ORF1ab/nsp13S3IaGcaTc11AY.1090.00074
ORF1ab/nsp13S3IaGcaTc11AY.1210.000135
ORF1ab/nsp13S3IaGcaTc11AY.260.000028
ORF1ab/nsp13S3IaGcaTc11AY.430.000004
ORF1ab/nsp13S3IaGcaTc11AY.46.60.000072
ORF1ab/nsp13S3IaGcaTc11B.1.177.730.000566
ORF1ab/nsp13S3IaGcaTc11B.1.20.000009
ORF1ab/nsp13S3IaGcaTc11B.1.258.30.001675
ORF1ab/nsp13S3IaGcaTc11B.1.5960.000087
ORF1ab/nsp13S3IaGcaTc11P.10.000016