CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 3

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13S3SS3SsynagCagT290529051272-274
ORF1ab/nsp13S3GS3GnonsynAgcGgc4784770.997908272-274
ORF1ab/nsp13S3GS3GnonsynAgCGgT47810.00209205272-274
ORF1ab/nsp13S3delS3deldelAGC---1781781272-274
ORF1ab/nsp13S3NS3NnonsynaGcaAc1691670.988166272-274
ORF1ab/nsp13S3NS3NnonsynaGCaAT16920.0118343272-274
ORF1ab/nsp13S3RS3RnonsynAgcCgc73380.520548272-274
ORF1ab/nsp13S3RS3RnonsynagCagA73330.452055272-274
ORF1ab/nsp13S3RS3RnonsynagCagG7320.0273973272-274
ORF1ab/nsp13S3IS3InonsynaGcaTc52521272-274
ORF1ab/nsp13S3CS3CnonsynAgcTgc24241272-274
ORF1ab/nsp13S3TS3TnonsynaGcaCc771272-274
ORF1ab/nsp13S3del2S3del2delaGCa--331272-274
ORF1ab/nsp13S3del1S3del1delagCag-111272-274
ORF1ab/nsp13S3AS3AnonsynAGCGCA111272-274
ORF1ab/nsp13S3DS3DnonsynAGcGAc111272-274

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13S3SagCagT29052905All0.000556
ORF1ab/nsp13S3SagCagT887887B.1.2430.061722
ORF1ab/nsp13S3SagCagT532532B.1.1.70.000476
ORF1ab/nsp13S3GAgcGgc477478All0.000091
ORF1ab/nsp13S3GAgCGgT1478All0
ORF1ab/nsp13S3SagCagT309309B.1.1.40.919643
ORF1ab/nsp13S3GAgcGgc206206B.1.1.70.000184
ORF1ab/nsp13S3SagCagT196196AY.250.001179
ORF1ab/nsp13S3delAGC---178178All0.000034
ORF1ab/nsp13S3NaGcaAc167169All0.000032
ORF1ab/nsp13S3NaGCaAT2169All0
ORF1ab/nsp13S3RAgcCgc3873All0.000007
ORF1ab/nsp13S3RagCagA3373All0.000006
ORF1ab/nsp13S3RagCagG273All0
ORF1ab/nsp13S3SagCagT6565AY.430.000288
ORF1ab/nsp13S3SagCagT6565P.10.001024
ORF1ab/nsp13S3SagCagT5757B.1.617.20.000215
ORF1ab/nsp13S3SagCagT5656AY.40.000087
ORF1ab/nsp13S3SagCagT5353AY.9.20.001947
ORF1ab/nsp13S3IaGcaTc5252All0.00001
ORF1ab/nsp13S3NaGcaAc5252B.1.617.20.000196
ORF1ab/nsp13S3delAGC---5050B.1.1.70.000045
ORF1ab/nsp13S3NaGcaAc4848AY.740.005551
ORF1ab/nsp13S3SagCagT4747B.1.20.000414
ORF1ab/nsp13S3SagCagT3838B.10.000348
ORF1ab/nsp13S3GAgcGgc3737B.1.10.000671
ORF1ab/nsp13S3SagCagT3434B.1.10.000617
ORF1ab/nsp13S3SagCagT3131B.1.1990.128099
ORF1ab/nsp13S3RAgcCgc2530B.1.1.70.000022
ORF1ab/nsp13S3RagCagA530B.1.1.70.000004
ORF1ab/nsp13S3SagCagT2929AY.98.10.001404
ORF1ab/nsp13S3SagCagT2828AY.330.00187
ORF1ab/nsp13S3GAgcGgc2727B.1.1770.000356
ORF1ab/nsp13S3SagCagT2626AY.30.000259
ORF1ab/nsp13S3GAgcGgc2525AY.250.00015
ORF1ab/nsp13S3SagCagT2525AY.440.000152
ORF1ab/nsp13S3CAgcTgc2424All0.000005
ORF1ab/nsp13S3SagCagT2222B.1.5260.000517
ORF1ab/nsp13S3SagCagT2121B.1.1770.000277
ORF1ab/nsp13S3SagCagT2020B.1.1.470.106952
ORF1ab/nsp13S3GAgcGgc1818AY.200.0007
ORF1ab/nsp13S3SagCagT1818B.1.6210.001593
ORF1ab/nsp13S3SagCagT1818P.1.150.004182
ORF1ab/nsp13S3GAgcGgc1717AY.1030.000106
ORF1ab/nsp13S3NaGcaAc1717AY.430.000075
ORF1ab/nsp13S3GAgcGgc1717AY.440.000103
ORF1ab/nsp13S3SagCagT1717B.1.1.2610.146552
ORF1ab/nsp13S3GAgcGgc1515B.1.617.20.000056
ORF1ab/nsp13S3SagCagT1414AY.1030.000087
ORF1ab/nsp13S3GAgcGgc1314AY.40.00002
ORF1ab/nsp13S3GAgCGgT114AY.40.000002
ORF1ab/nsp13S3SagCagT1414B.1.4290.000329
ORF1ab/nsp13S3delAGC---1313AY.40.00002
ORF1ab/nsp13S3SagCagT1212B.1.1.410.075949
ORF1ab/nsp13S3SagCagT1212P.1.100.003234
ORF1ab/nsp13S3NaGcaAc1111B.1.1.70.00001
ORF1ab/nsp13S3delAGC---1010AY.230.000697
ORF1ab/nsp13S3delAGC---1010AY.430.000044
ORF1ab/nsp13S3GAgcGgc88AY.290.000126
ORF1ab/nsp13S3SagCagT88AY.340.000776
ORF1ab/nsp13S3IaGcaTc88AY.40.000012
ORF1ab/nsp13S3SagCagT88B.1.1.630.003086
ORF1ab/nsp13S3GAgcGgc88B.1.20.00007
ORF1ab/nsp13S3SagCagT88B.1.258.160.013093
ORF1ab/nsp13S3SagCagT88B.1.3510.000238
ORF1ab/nsp13S3TaGcaCc77All0.000001
ORF1ab/nsp13S3GAgcGgc77AY.390.000173
ORF1ab/nsp13S3NaGcaAc77AY.40.000011
ORF1ab/nsp13S3GAgcGgc77AY.50.000145
ORF1ab/nsp13S3SagCagT77B.1.1600.000218
ORF1ab/nsp13S3delAGC---77B.1.1770.000092
ORF1ab/nsp13S3SagCagT77B.1.258.170.000728
ORF1ab/nsp13S3IaGcaTc66AY.250.000036
ORF1ab/nsp13S3delAGC---66AY.4.50.000645
ORF1ab/nsp13S3NaGcaAc66AY.440.000037
ORF1ab/nsp13S3SagCagT66AY.46.60.000433
ORF1ab/nsp13S3IaGcaTc66B.1.1.70.000005
ORF1ab/nsp13S3IaGcaTc66B.1.617.20.000023
ORF1ab/nsp13S3SagCagT66C.370.000696
ORF1ab/nsp13S3SagCagT55AY.200.000194
ORF1ab/nsp13S3RagCagA45AY.250.000024
ORF1ab/nsp13S3RAgcCgc15AY.250.000006
ORF1ab/nsp13S3SagCagT55AY.260.000142
ORF1ab/nsp13S3SagCagT55AY.290.000079
ORF1ab/nsp13S3GAgcGgc55AY.430.000022
ORF1ab/nsp13S3SagCagT55AY.90.000338
ORF1ab/nsp13S3SagCagT55AY.99.20.000461
ORF1ab/nsp13S3SagCagT55U.30.019305
ORF1ab/nsp13S3SagCagT44AD.20.000876
ORF1ab/nsp13S3SagCagT44AY.10.001583
ORF1ab/nsp13S3SagCagT44AY.1020.000106
ORF1ab/nsp13S3NaGcaAc44AY.1030.000025
ORF1ab/nsp13S3SagCagT44AY.1130.00057
ORF1ab/nsp13S3GAgcGgc44AY.210.00759
ORF1ab/nsp13S3RagCagA44AY.220.008368
ORF1ab/nsp13S3IaGcaTc44AY.440.000024
ORF1ab/nsp13S3IaGcaTc44AY.60.000165
ORF1ab/nsp13S3CAgcTgc44AY.610.000419
ORF1ab/nsp13S3delAGC---44B.1.1.330.001684
ORF1ab/nsp13S3delAGC---44B.1.1.3480.003185
ORF1ab/nsp13S3GAgcGgc44B.1.5250.000453
ORF1ab/nsp13S3SagCagT44N.90.02381
ORF1ab/nsp13S3del2aGCa--33All0.000001
ORF1ab/nsp13S3SagCagT33AY.1000.000138
ORF1ab/nsp13S3NaGcaAc33AY.1160.00086
ORF1ab/nsp13S3SagCagT33AY.1180.000188
ORF1ab/nsp13S3SagCagT33AY.1190.000106
ORF1ab/nsp13S3delAGC---33AY.1200.000112
ORF1ab/nsp13S3GAgcGgc33AY.230.000209
ORF1ab/nsp13S3delAGC---33AY.34.10.00153
ORF1ab/nsp13S3SagCagT33AY.390.000074
ORF1ab/nsp13S3SagCagT33AY.4.20.000065
ORF1ab/nsp13S3SagCagT33AY.470.000093
ORF1ab/nsp13S3SagCagT33AY.50.000062
ORF1ab/nsp13S3SagCagT33AY.980.000237
ORF1ab/nsp13S3GAgcGgc33B.1.1.5190.000119
ORF1ab/nsp13S3SagCagT33B.1.1460.012712
ORF1ab/nsp13S3GAgcGgc33B.1.177.550.006993
ORF1ab/nsp13S3RagCagA33B.1.20.000026
ORF1ab/nsp13S3SagCagT33B.1.221.40.0125
ORF1ab/nsp13S3SagCagT33B.1.2340.000396
ORF1ab/nsp13S3SagCagT33B.1.360.000438
ORF1ab/nsp13S3SagCagT33B.1.3890.003006
ORF1ab/nsp13S3SagCagT33B.1.617.10.000387
ORF1ab/nsp13S3RagCagA23B.1.617.20.000008
ORF1ab/nsp13S3RAgcCgc13B.1.617.20.000004
ORF1ab/nsp13S3SagCagT33P.20.00056
ORF1ab/nsp13S3GAgcGgc33R.10.00027
ORF1ab/nsp13S3SagCagT22AH.30.007605
ORF1ab/nsp13S3GAgcGgc22AY.1190.000071
ORF1ab/nsp13S3delAGC---22AY.120.000632
ORF1ab/nsp13S3NaGcaAc22AY.1200.000074
ORF1ab/nsp13S3SagCagT22AY.1200.000074
ORF1ab/nsp13S3SagCagT22AY.16.10.00094
ORF1ab/nsp13S3IaGcaTc22AY.20.000712
ORF1ab/nsp13S3GAgcGgc22AY.260.000057
ORF1ab/nsp13S3GAgcGgc22AY.30.00002
ORF1ab/nsp13S3SagCagT22AY.3.10.000171
ORF1ab/nsp13S3delAGC---22AY.330.000134
ORF1ab/nsp13S3SagCagT22AY.350.000466
ORF1ab/nsp13S3CAgcTgc22AY.40.000003
ORF1ab/nsp13S3RAgcCgc22AY.40.000003
ORF1ab/nsp13S3delAGC---22AY.4.40.000818
ORF1ab/nsp13S3CAgcTgc22AY.440.000012
ORF1ab/nsp13S3SagCagT22AY.450.000243
ORF1ab/nsp13S3delAGC---22AY.50.000041
ORF1ab/nsp13S3CAgcTgc22AY.50.000041
ORF1ab/nsp13S3SagCagT22AY.540.000191
ORF1ab/nsp13S3delAGC---22AY.600.001876
ORF1ab/nsp13S3SagCagT22AY.750.000112
ORF1ab/nsp13S3delAGC---22AY.90.000135
ORF1ab/nsp13S3SagCagT22AY.9.10.000167
ORF1ab/nsp13S3delAGC---22AY.9.20.000073
ORF1ab/nsp13S3IaGcaTc22B0.000256
ORF1ab/nsp13S3SagCagT22B0.000256
ORF1ab/nsp13S3IaGcaTc22B.10.000018
ORF1ab/nsp13S3TaGcaCc22B.10.000018
ORF1ab/nsp13S3GAgcGgc22B.10.000018
ORF1ab/nsp13S3RAgcCgc12B.10.000009
ORF1ab/nsp13S3RagCagA12B.10.000009
ORF1ab/nsp13S3SagCagT22B.1.1.1700.002494
ORF1ab/nsp13S3SagCagT22B.1.1.2940.002532
ORF1ab/nsp13S3CAgcTgc22B.1.1.70.000002
ORF1ab/nsp13S3TaGcaCc22B.1.1.70.000002
ORF1ab/nsp13S3SagCagT22B.1.160.300.005952
ORF1ab/nsp13S3delAGC---22B.1.177.40.000422
ORF1ab/nsp13S3SagCagT22B.1.177.540.001213
ORF1ab/nsp13S3delAGC---22B.1.177.570.000562
ORF1ab/nsp13S3SagCagT22B.1.177.810.000379
ORF1ab/nsp13S3SagCagT22B.1.2400.000431
ORF1ab/nsp13S3SagCagT22B.1.2580.000133
ORF1ab/nsp13S3delAGC---22B.1.360.000292
ORF1ab/nsp13S3SagCagT22B.1.3690.00057
ORF1ab/nsp13S3RagCagA22B.1.370.029412
ORF1ab/nsp13S3GAgcGgc22B.1.4270.000101
ORF1ab/nsp13S3GAgcGgc22B.1.438.10.000215
ORF1ab/nsp13S3SagCagT22B.1.5750.000607
ORF1ab/nsp13S3SagCagT22B.1.5770.001375
ORF1ab/nsp13S3SagCagT22B.1.5820.000981
ORF1ab/nsp13S3CAgcTgc22B.1.617.20.000008
ORF1ab/nsp13S3SagCagT22B.1.6370.000146
ORF1ab/nsp13S3delAGC---22N.40.008511
ORF1ab/nsp13S3delAGC---22N.60.014184
ORF1ab/nsp13S3GAgcGgc22P.10.000032
ORF1ab/nsp13S3SagCagT22P.1.140.000096
ORF1ab/nsp13S3GAgcGgc22P.1.150.000465
ORF1ab/nsp13S3delAGC---22P.20.000373
ORF1ab/nsp13S3SagCagT22Q.80.00033
ORF1ab/nsp13S3RagCagG110.055556
ORF1ab/nsp13S3RagCagA11A0.000387
ORF1ab/nsp13S3delAGC---11A.10.000282
ORF1ab/nsp13S3GAgcGgc11A.10.000282
ORF1ab/nsp13S3GAgcGgc11A.2.40.003367
ORF1ab/nsp13S3SagCagT11A.210.00277
ORF1ab/nsp13S3SagCagT11AA.60.016129
ORF1ab/nsp13S3delAGC---11AD.20.000219
ORF1ab/nsp13S3SagCagT11AE.80.000489
ORF1ab/nsp13S3del1agCag-11All0
ORF1ab/nsp13S3AAGCGCA11All0
ORF1ab/nsp13S3DAGcGAc11All0
ORF1ab/nsp13S3SagCagT11AU.20.002421
ORF1ab/nsp13S3SagCagT11AY.100.00053
ORF1ab/nsp13S3CAgcTgc11AY.1000.000046
ORF1ab/nsp13S3GAgcGgc11AY.1000.000046
ORF1ab/nsp13S3GAgcGgc11AY.1020.000027
ORF1ab/nsp13S3IaGcaTc11AY.1020.000027
ORF1ab/nsp13S3IaGcaTc11AY.1030.000006
ORF1ab/nsp13S3RAgcCgc11AY.1030.000006
ORF1ab/nsp13S3SagCagT11AY.1040.001984
ORF1ab/nsp13S3SagCagT11AY.1050.000643
ORF1ab/nsp13S3SagCagT11AY.1060.000335
ORF1ab/nsp13S3SagCagT11AY.1080.001103
ORF1ab/nsp13S3SagCagT11AY.1090.00074
ORF1ab/nsp13S3IaGcaTc11AY.1090.00074
ORF1ab/nsp13S3GAgcGgc11AY.1100.000113
ORF1ab/nsp13S3RagCagA11AY.1140.000231
ORF1ab/nsp13S3delAGC---11AY.1160.000287
ORF1ab/nsp13S3GAgcGgc11AY.116.10.000311
ORF1ab/nsp13S3GAgcGgc11AY.1180.000063
ORF1ab/nsp13S3NaGcaAc11AY.1180.000063
ORF1ab/nsp13S3RagCagA11AY.1180.000063
ORF1ab/nsp13S3GAgcGgc11AY.1200.000037
ORF1ab/nsp13S3SagCagT11AY.120.10.000321
ORF1ab/nsp13S3NaGcaAc11AY.1210.000135
ORF1ab/nsp13S3IaGcaTc11AY.1210.000135
ORF1ab/nsp13S3SagCagT11AY.1210.000135
ORF1ab/nsp13S3CAgcTgc11AY.16.10.00047
ORF1ab/nsp13S3delAGC---11AY.190.00114
ORF1ab/nsp13S3RAgcCgc11AY.230.00007
ORF1ab/nsp13S3SagCagT11AY.230.00007
ORF1ab/nsp13S3delAGC---11AY.250.000006
ORF1ab/nsp13S3IaGcaTc11AY.260.000028
ORF1ab/nsp13S3SagCagT11AY.270.000065
ORF1ab/nsp13S3NaGcaAc11AY.29.10.000221
ORF1ab/nsp13S3delAGC---11AY.30.00001
ORF1ab/nsp13S3RagCagA11AY.30.00001
ORF1ab/nsp13S3SagCagT11AY.300.000396
ORF1ab/nsp13S3NaGCaAT11AY.330.000067
ORF1ab/nsp13S3GAgcGgc11AY.340.000097
ORF1ab/nsp13S3del1agCag-11AY.34.10.00051
ORF1ab/nsp13S3GAgcGgc11AY.360.000148
ORF1ab/nsp13S3delAGC---11AY.380.000499
ORF1ab/nsp13S3GAgcGgc11AY.380.000499
ORF1ab/nsp13S3CAgcTgc11AY.390.000025
ORF1ab/nsp13S3NaGcaAc11AY.390.000025
ORF1ab/nsp13S3SagCagT11AY.39.10.00004
ORF1ab/nsp13S3del2aGCa--11AY.40.000002
ORF1ab/nsp13S3NaGcaAc11AY.4.20.000022
ORF1ab/nsp13S3SagCagT11AY.4.2.10.000149
ORF1ab/nsp13S3SagCagT11AY.4.50.000107
ORF1ab/nsp13S3delAGC---11AY.410.000294
ORF1ab/nsp13S3CAgcTgc11AY.420.00004
ORF1ab/nsp13S3IaGcaTc11AY.430.000004
ORF1ab/nsp13S3RagCagA11AY.430.000004
ORF1ab/nsp13S3RagCagA11AY.440.000006
ORF1ab/nsp13S3delAGC---11AY.450.000122
ORF1ab/nsp13S3RAgcCgc11AY.450.000122
ORF1ab/nsp13S3GAgcGgc11AY.450.000122
ORF1ab/nsp13S3NaGcaAc11AY.460.000104
ORF1ab/nsp13S3delAGC---11AY.460.000104
ORF1ab/nsp13S3delAGC---11AY.46.20.000635
ORF1ab/nsp13S3NaGcaAc11AY.46.40.000165
ORF1ab/nsp13S3IaGcaTc11AY.46.60.000072
ORF1ab/nsp13S3GAgcGgc11AY.470.000031
ORF1ab/nsp13S3RagCagA11AY.500.000799
ORF1ab/nsp13S3SagCagT11AY.510.000909
ORF1ab/nsp13S3AAGCGCA11AY.590.00053
ORF1ab/nsp13S3SagCagT11AY.60.000041
ORF1ab/nsp13S3NaGcaAc11AY.60.000041
ORF1ab/nsp13S3delAGC---11AY.60.000041
ORF1ab/nsp13S3RagCagA11AY.60.000041
ORF1ab/nsp13S3SagCagT11AY.610.000105
ORF1ab/nsp13S3RAgcCgc11AY.620.000436
ORF1ab/nsp13S3GAgcGgc11AY.630.000387
ORF1ab/nsp13S3NaGcaAc11AY.650.000533
ORF1ab/nsp13S3delAGC---11AY.680.000274
ORF1ab/nsp13S3GAgcGgc11AY.680.000274
ORF1ab/nsp13S3SagCagT11AY.740.000116
ORF1ab/nsp13S3delAGC---11AY.75.10.00018
ORF1ab/nsp13S3SagCagT11AY.790.001211
ORF1ab/nsp13S3SagCagT11AY.840.000437
ORF1ab/nsp13S3RagCagA11AY.9.10.000084
ORF1ab/nsp13S3delAGC---11AY.9.10.000084
ORF1ab/nsp13S3SagCagT11AY.910.00073
ORF1ab/nsp13S3delAGC---11AY.940.000443
ORF1ab/nsp13S3delAGC---11AY.950.000761
ORF1ab/nsp13S3GAgcGgc11AY.980.000079
ORF1ab/nsp13S3delAGC---11AY.98.10.000048
ORF1ab/nsp13S3RAgcCgc11AY.990.001049
ORF1ab/nsp13S3SagCagT11AY.99.10.001553
ORF1ab/nsp13S3NaGcaAc11AY.99.20.000092
ORF1ab/nsp13S3TaGcaCc11B0.000128
ORF1ab/nsp13S3NaGcaAc11B.10.000009
ORF1ab/nsp13S3del2aGCa--11B.10.000009
ORF1ab/nsp13S3delAGC---11B.10.000009
ORF1ab/nsp13S3RagCagG11B.1.10.000018
ORF1ab/nsp13S3delAGC---11B.1.10.000018
ORF1ab/nsp13S3SagCagT11B.1.1.1610.003534
ORF1ab/nsp13S3SagCagT11B.1.1.2070.001182
ORF1ab/nsp13S3delAGC---11B.1.1.2320.001815
ORF1ab/nsp13S3GAgcGgc11B.1.1.2360.006897
ORF1ab/nsp13S3delAGC---11B.1.1.3110.000358
ORF1ab/nsp13S3delAGC---11B.1.1.3120.001912
ORF1ab/nsp13S3delAGC---11B.1.1.3220.008772
ORF1ab/nsp13S3delAGC---11B.1.1.370.000193
ORF1ab/nsp13S3SagCagT11B.1.1.3700.012658
ORF1ab/nsp13S3SagCagT11B.1.1.3720.000689
ORF1ab/nsp13S3delAGC---11B.1.1.390.00051
ORF1ab/nsp13S3GAgcGgc11B.1.1.3990.090909
ORF1ab/nsp13S3delAGC---11B.1.1.4090.002833
ORF1ab/nsp13S3SagCagT11B.1.1.4320.001266
ORF1ab/nsp13S3SagCagT11B.1.1.4340.000349
ORF1ab/nsp13S3SagCagT11B.1.1.440.00241
ORF1ab/nsp13S3GAgcGgc11B.1.1.5070.008696
ORF1ab/nsp13S3SagCagT11B.1.1.5260.003546
ORF1ab/nsp13S3DAGcGAc11B.1.1.70.000001
ORF1ab/nsp13S3SagCagT11B.1.1.700.000341
ORF1ab/nsp13S3SagCagT11B.1.1110.001175
ORF1ab/nsp13S3GAgcGgc11B.1.1160.011628
ORF1ab/nsp13S3NaGcaAc11B.1.1600.000031
ORF1ab/nsp13S3GAgcGgc11B.1.1600.000031
ORF1ab/nsp13S3delAGC---11B.1.1600.000031
ORF1ab/nsp13S3SagCagT11B.1.160.100.008065
ORF1ab/nsp13S3GAgcGgc11B.1.160.160.000929
ORF1ab/nsp13S3NaGcaAc11B.1.1770.000013
ORF1ab/nsp13S3CAgcTgc11B.1.1770.000013
ORF1ab/nsp13S3RAgcCgc11B.1.1770.000013
ORF1ab/nsp13S3CAgcTgc11B.1.177.110.001698
ORF1ab/nsp13S3delAGC---11B.1.177.180.00116
ORF1ab/nsp13S3delAGC---11B.1.177.210.000076
ORF1ab/nsp13S3GAgcGgc11B.1.177.40.000211
ORF1ab/nsp13S3SagCagT11B.1.177.400.005155
ORF1ab/nsp13S3SagCagT11B.1.177.420.000894
ORF1ab/nsp13S3delAGC---11B.1.177.560.000668
ORF1ab/nsp13S3delAGC---11B.1.177.580.001332
ORF1ab/nsp13S3del2aGCa--11B.1.177.580.001332
ORF1ab/nsp13S3delAGC---11B.1.177.630.002703
ORF1ab/nsp13S3SagCagT11B.1.177.70.000165
ORF1ab/nsp13S3IaGcaTc11B.1.177.730.000566
ORF1ab/nsp13S3delAGC---11B.1.177.870.000728
ORF1ab/nsp13S3delAGC---11B.1.177.90.001332
ORF1ab/nsp13S3NaGcaAc11B.1.20.000009
ORF1ab/nsp13S3IaGcaTc11B.1.20.000009
ORF1ab/nsp13S3delAGC---11B.1.20.000009
ORF1ab/nsp13S3GAgcGgc11B.1.214.20.0006
ORF1ab/nsp13S3NaGcaAc11B.1.2210.000071
ORF1ab/nsp13S3GAgcGgc11B.1.2210.000071
ORF1ab/nsp13S3SagCagT11B.1.2390.001221
ORF1ab/nsp13S3RagCagA11B.1.2400.000216
ORF1ab/nsp13S3RagCagA11B.1.2580.000067
ORF1ab/nsp13S3delAGC---11B.1.2580.000067
ORF1ab/nsp13S3IaGcaTc11B.1.258.30.001675
ORF1ab/nsp13S3SagCagT11B.1.264.10.047619
ORF1ab/nsp13S3SagCagT11B.1.3290.000608
ORF1ab/nsp13S3SagCagT11B.1.3490.000715
ORF1ab/nsp13S3SagCagT11B.1.36.100.004785
ORF1ab/nsp13S3GAgcGgc11B.1.36.170.000494
ORF1ab/nsp13S3SagCagT11B.1.36.170.000494
ORF1ab/nsp13S3delAGC---11B.1.36.180.00042
ORF1ab/nsp13S3GAgcGgc11B.1.3610.001289
ORF1ab/nsp13S3SagCagT11B.1.3970.004854
ORF1ab/nsp13S3delAGC---11B.1.4160.001269
ORF1ab/nsp13S3SagCagT11B.1.4270.00005
ORF1ab/nsp13S3NaGcaAc11B.1.4270.00005
ORF1ab/nsp13S3delAGC---11B.1.4290.000024
ORF1ab/nsp13S3CAgcTgc11B.1.466.20.000391
ORF1ab/nsp13S3SagCagT11B.1.5250.000113
ORF1ab/nsp13S3NaGCaAT11B.1.5260.000024
ORF1ab/nsp13S3RAgcCgc11B.1.5380.008065
ORF1ab/nsp13S3SagCagT11B.1.5610.000397
ORF1ab/nsp13S3GAgcGgc11B.1.5670.003333
ORF1ab/nsp13S3GAgcGgc11B.1.5770.000687
ORF1ab/nsp13S3CAgcTgc11B.1.5800.004065
ORF1ab/nsp13S3NaGcaAc11B.1.5860.010989
ORF1ab/nsp13S3SagCagT11B.1.5950.000261
ORF1ab/nsp13S3SagCagT11B.1.5960.000087
ORF1ab/nsp13S3CAgcTgc11B.1.5960.000087
ORF1ab/nsp13S3IaGcaTc11B.1.5960.000087
ORF1ab/nsp13S3GAgcGgc11B.1.617.10.000129
ORF1ab/nsp13S3RAgcCgc11B.1.617.10.000129
ORF1ab/nsp13S3delAGC---11B.1.617.20.000004
ORF1ab/nsp13S3TaGcaCc11B.1.6210.000089
ORF1ab/nsp13S3SagCagT11B.30.000831
ORF1ab/nsp13S3SagCagT11C.300.001727
ORF1ab/nsp13S3delAGC---11C.350.000774
ORF1ab/nsp13S3TaGcaCc11D.20.000075
ORF1ab/nsp13S3SagCagT11D.20.000075
ORF1ab/nsp13S3RagCagA11P.10.000016
ORF1ab/nsp13S3IaGcaTc11P.10.000016
ORF1ab/nsp13S3SagCagT11P.1.10.000318
ORF1ab/nsp13S3CAgcTgc11P.1.150.000232
ORF1ab/nsp13S3GAgcGgc11P.1.20.001156
ORF1ab/nsp13S3SagCagT11Q.10.000126
ORF1ab/nsp13S3SagCagT11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.