CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 27 | L27L | L27L | syn | ctC | ctT | 17503 | 17399 | 0.994058 | 344-346 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 17399 | 17503 | All | 0.003328 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6114 | 6114 | P.1.17 | 0.989 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1481 | 1487 | B.1.1.7 | 0.001326 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1373 | 1373 | AY.64 | 0.817262 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1139 | 1139 | P.1.17.1 | 0.9965 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1016 | 1018 | B.1.160 | 0.031687 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 564 | 564 | AY.43 | 0.002499 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 545 | 552 | AY.103 | 0.003384 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 505 | 509 | AY.4 | 0.000786 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 415 | 419 | B.1 | 0.003801 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 413 | 418 | B.1.617.2 | 0.001555 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 265 | 265 | B.1.243 | 0.01844 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 260 | 260 | AY.44 | 0.001583 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 215 | 217 | B.1.2 | 0.001893 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 194 | 197 | P.1 | 0.003056 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 158 | 158 | B.1.9.4 | 0.969325 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 143 | 143 | AY.62 | 0.062309 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 132 | 133 | AY.39 | 0.003262 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 103 | 103 | B.1.427 | 0.005201 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 93 | 96 | B.1.1 | 0.001687 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 94 | 94 | AY.3 | 0.000935 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 78 | 80 | AY.25 | 0.000469 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 74 | 74 | B.1.1.434 | 0.025793 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 72 | 72 | AY.119 | 0.002542 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 69 | 69 | AE.8 | 0.033741 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 62 | 62 | AY.26 | 0.001755 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 57 | 57 | B.1.234 | 0.007521 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 46 | 51 | B.1.177 | 0.000606 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 47 | 47 | AY.102 | 0.001246 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 46 | 46 | AY.9.1 | 0.003851 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 43 | 43 | AY.75 | 0.002409 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 41 | 41 | AY.46.6 | 0.002961 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 41 | 41 | B.1.311 | 0.011258 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 39 | 39 | B.1.429 | 0.000918 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 38 | 38 | AY.100 | 0.001748 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 38 | 38 | AY.9.2 | 0.001396 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 35 | 35 | AY.118 | 0.002193 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 34 | 35 | AY.29 | 0.000536 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 34 | 34 | AY.4.2 | 0.000737 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 29 | AY.34 | 0.000097 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 29 | 29 | P.4 | 0.110266 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 24 | 27 | AY.6 | 0.000987 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 25 | 25 | AY.121 | 0.003383 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 23 | 25 | AY.5 | 0.000475 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 25 | 25 | AY.98 | 0.001975 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 25 | 25 | B.1.177.48 | 0.078125 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 23 | 25 | B.1.351 | 0.000684 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 25 | 25 | C.16 | 0.026511 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 24 | 24 | C.36.3 | 0.013613 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 23 | 23 | B.1.1.519 | 0.000913 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 22 | 22 | P.1.16 | 0.00823 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 19 | 19 | AZ.2 | 0.015599 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 19 | 19 | B.1.1.67 | 0.086758 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 18 | 18 | AY.117 | 0.001521 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 17 | 17 | B.1.526 | 0.0004 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 16 | 16 | AY.42 | 0.000644 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 16 | 16 | AY.65 | 0.008529 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 11 | 16 | B.1.1.28 | 0.003424 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 15 | 15 | B.1.177.81 | 0.00284 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 15 | 15 | B.1.36 | 0.002189 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 14 | 14 | AY.113 | 0.001993 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 14 | 14 | AY.20 | 0.000544 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 13 | 13 | A.2.5 | 0.006487 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 12 | 13 | AY.33 | 0.000801 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 13 | 13 | AY.99.2 | 0.001198 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 13 | 13 | B.1.1.214 | 0.000721 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 13 | 13 | B.1.177.7 | 0.002143 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 13 | 13 | B.1.621 | 0.001151 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 13 | 13 | C.37 | 0.001509 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 12 | 12 | A.2.4 | 0.040404 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 11 | 12 | AY.23 | 0.000767 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 12 | 12 | AY.61 | 0.001257 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 12 | 12 | B.1.525 | 0.001358 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 12 | 12 | P.1.1 | 0.003812 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 11 | 11 | AY.116 | 0.003155 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 11 | 11 | AY.14 | 0.000968 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 11 | 11 | AY.7.2 | 0.006152 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 11 | 11 | B.1.1.222 | 0.002244 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 11 | 11 | B.1.177.86 | 0.002018 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 11 | 11 | B.1.36.29 | 0.005691 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 10 | 10 | B.1.466.2 | 0.003912 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 10 | 10 | Q.1 | 0.001263 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 9 | 9 | AY.35 | 0.002097 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 9 | 9 | B.1.111 | 0.010576 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 9 | 9 | B.1.474 | 0.01711 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 9 | 9 | B.1.637 | 0.000658 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 9 | 9 | D.2 | 0.000675 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 9 | 9 | P.1.15 | 0.002091 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 8 | 8 | AY.13 | 0.001288 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 8 | 8 | B.1.221 | 0.000568 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 8 | 8 | B.1.9 | 0.049383 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 8 | 8 | P.1.14 | 0.000382 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 8 | 8 | P.1.6 | 0.015564 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 7 | B | 0.000767 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 7 | 7 | B.1.139 | 0.005132 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 7 | 7 | B.1.177.54 | 0.004245 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 7 | 7 | B.1.241 | 0.005682 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 7 | 7 | B.1.349 | 0.005004 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 7 | 7 | B.1.595 | 0.001827 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 7 | 7 | N.5 | 0.012367 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | AY.12 | 0.001896 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | AY.120.1 | 0.001926 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | AY.5.3 | 0.002024 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | B.1.1.317 | 0.00247 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | B.1.1.397 | 0.013514 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | B.1.517 | 0.002562 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 5 | 5 | AD.2 | 0.001095 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 5 | 5 | AY.24 | 0.002155 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 5 | 5 | AY.85 | 0.002136 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 5 | 5 | B.1.1.294 | 0.006329 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 5 | 5 | B.1.1.304 | 0.014045 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 5 | 5 | B.1.177.57 | 0.001405 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 5 | B.1.177.73 | 0.001133 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | A.21 | 0.01108 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | A.29 | 0.021277 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | AY.22 | 0.008368 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | AY.34.1 | 0.00204 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.1.153 | 0.004381 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.1.201 | 0.097561 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.1.285 | 0.026144 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.1.464 | 0.005891 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.1.526 | 0.014184 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.177.45 | 0.001525 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.177.79 | 0.009368 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.36.17 | 0.001976 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.36.36 | 0.002408 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.367 | 0.00317 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.425 | 0.011976 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 4 | P.1.13 | 0.002695 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.105 | 0.001929 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.76 | 0.014493 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | B.1.1.207 | 0.003546 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | B.1.1.416 | 0.002715 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | B.1.1.453 | 0.025424 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | B.1.324 | 0.004815 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 3 | B.1.538 | 0.016129 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 3 | B.1.564 | 0.000852 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | B.1.9.5 | 0.017045 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | P.1.10 | 0.000808 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 2 | A | 0.000387 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 2 | AY.116.1 | 0.000311 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.1.205 | 0.007435 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.1.368 | 0.006173 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 2 | B.1.1.37 | 0.000193 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 2 | B.1.177.21 | 0.000076 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.420 | 0.020833 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.638 | 0.105263 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | C.1.2 | 0.008511 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | C.26 | 0.014706 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | C.4 | 0.02 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 2 | P.1.7 | 0.000319 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.242 | 0.043478 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.328 | 0.016949 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.373 | 0.02381 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.160.21 | 0.020408 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.177.70 | 0.005917 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.181 | 0.019608 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.190 | 0.01 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.245 | 0.03125 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.344 | 0.008197 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.466 | 0.023256 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.38 | 0.02381 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.4.8 | 0.071429 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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