CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 27 | L27L | L27L | syn | ctC | ctT | 17503 | 17399 | 0.994058 | 344-346 |
ORF1ab/nsp1 | 27 | L27L | L27L | syn | ctC | ctA | 17503 | 55 | 0.00314232 | 344-346 |
ORF1ab/nsp1 | 27 | L27L | L27L | syn | ctC | ctG | 17503 | 47 | 0.00268525 | 344-346 |
ORF1ab/nsp1 | 27 | L27L | L27L | syn | CtC | TtG | 17503 | 2 | 0.000114266 | 344-346 |
ORF1ab/nsp1 | 27 | L27F | L27F | nonsyn | Ctc | Ttc | 2845 | 2839 | 0.997891 | 344-346 |
ORF1ab/nsp1 | 27 | L27F | L27F | nonsyn | CtC | TtT | 2845 | 6 | 0.00210896 | 344-346 |
ORF1ab/nsp1 | 27 | L27I | L27I | nonsyn | Ctc | Atc | 699 | 697 | 0.997139 | 344-346 |
ORF1ab/nsp1 | 27 | L27I | L27I | nonsyn | CtC | AtT | 699 | 2 | 0.00286123 | 344-346 |
ORF1ab/nsp1 | 27 | L27H | L27H | nonsyn | cTc | cAc | 227 | 227 | 1 | 344-346 |
ORF1ab/nsp1 | 27 | L27del | L27del | del | CTC | --- | 144 | 144 | 1 | 344-346 |
ORF1ab/nsp1 | 27 | L27P | L27P | nonsyn | cTc | cCc | 58 | 57 | 0.982759 | 344-346 |
ORF1ab/nsp1 | 27 | L27P | L27P | nonsyn | cTC | cCT | 58 | 1 | 0.0172414 | 344-346 |
ORF1ab/nsp1 | 27 | L27R | L27R | nonsyn | cTc | cGc | 38 | 36 | 0.947368 | 344-346 |
ORF1ab/nsp1 | 27 | L27R | L27R | nonsyn | cTC | cGA | 38 | 2 | 0.0526316 | 344-346 |
ORF1ab/nsp1 | 27 | L27V | L27V | nonsyn | Ctc | Gtc | 15 | 15 | 1 | 344-346 |
ORF1ab/nsp1 | 27 | L27del1 | L27del1 | del | ctC | ct- | 3 | 3 | 1 | 344-346 |
ORF1ab/nsp1 | 27 | L27Y | L27Y | nonsyn | CTc | TAc | 2 | 2 | 1 | 344-346 |
ORF1ab/nsp1 | 27 | L27del2 | L27del2 | del | CTc | --c | 1 | 1 | 1 | 344-346 |
ORF1ab/nsp1 | 27 | L27A | L27A | nonsyn | CTC | GCT | 1 | 1 | 1 | 344-346 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 17399 | 17503 | All | 0.003328 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 55 | 17503 | All | 0.000011 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctG | 47 | 17503 | All | 0.000009 |
ORF1ab/nsp1 | 27 | L27L | CtC | TtG | 2 | 17503 | All | 0 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6114 | 6114 | P.1.17 | 0.989 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2839 | 2845 | All | 0.000543 |
ORF1ab/nsp1 | 27 | L27F | CtC | TtT | 6 | 2845 | All | 0.000001 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1481 | 1487 | B.1.1.7 | 0.001326 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 5 | 1487 | B.1.1.7 | 0.000004 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctG | 1 | 1487 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1373 | 1373 | AY.64 | 0.817262 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1139 | 1139 | P.1.17.1 | 0.9965 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1016 | 1018 | B.1.160 | 0.031687 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 2 | 1018 | B.1.160 | 0.000062 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 740 | 740 | B.1.1.7 | 0.000662 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 697 | 699 | All | 0.000133 |
ORF1ab/nsp1 | 27 | L27I | CtC | AtT | 2 | 699 | All | 0 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 564 | 564 | AY.43 | 0.002499 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 545 | 552 | AY.103 | 0.003384 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 6 | 552 | AY.103 | 0.000037 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctG | 1 | 552 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 505 | 509 | AY.4 | 0.000786 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 3 | 509 | AY.4 | 0.000005 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctG | 1 | 509 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 415 | 419 | B.1 | 0.003801 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 2 | 419 | B.1 | 0.000018 |
ORF1ab/nsp1 | 27 | L27L | CtC | TtG | 1 | 419 | B.1 | 0.000009 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctG | 1 | 419 | B.1 | 0.000009 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 418 | 418 | B.1.1.374 | 0.992874 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 413 | 418 | B.1.617.2 | 0.001555 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctG | 3 | 418 | B.1.617.2 | 0.000011 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 2 | 418 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 265 | 265 | B.1.243 | 0.01844 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 260 | 260 | AY.44 | 0.001583 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 227 | 227 | All | 0.000043 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 220 | 220 | AY.4 | 0.000342 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 215 | 217 | B.1.2 | 0.001893 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 2 | 217 | B.1.2 | 0.000018 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 194 | 197 | P.1 | 0.003056 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctG | 2 | 197 | P.1 | 0.000032 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 1 | 197 | P.1 | 0.000016 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 158 | 158 | B.1.9.4 | 0.969325 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 156 | 156 | AY.103 | 0.000969 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 144 | 144 | All | 0.000028 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 143 | 143 | AY.62 | 0.062309 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 132 | 133 | AY.39 | 0.003262 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 1 | 133 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 133 | 133 | B.1.497 | 0.041863 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 127 | 127 | B.1.617.2 | 0.000478 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 118 | 118 | AZ.6 | 0.991597 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 107 | 107 | AY.3 | 0.001064 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 103 | 103 | B.1.427 | 0.005201 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 98 | 98 | AY.25 | 0.000589 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 93 | 96 | B.1.1 | 0.001687 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 3 | 96 | B.1.1 | 0.000054 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 94 | 94 | AY.3 | 0.000935 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 89 | 89 | B.1.177.82 | 0.042482 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 84 | 84 | B.1.617.2 | 0.000316 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 78 | 80 | AY.25 | 0.000469 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctG | 1 | 80 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 1 | 80 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 74 | 74 | B.1.1.434 | 0.025793 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 72 | 72 | AY.119 | 0.002542 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 69 | 69 | AE.8 | 0.033741 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 65 | 65 | AY.43 | 0.000288 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 63 | 63 | B.1.558 | 0.287671 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 62 | 62 | AY.26 | 0.001755 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 57 | 58 | All | 0.000011 |
ORF1ab/nsp1 | 27 | L27P | cTC | cCT | 1 | 58 | All | 0 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 57 | 57 | AY.5 | 0.001177 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 57 | 57 | B.1.234 | 0.007521 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 46 | 51 | B.1.177 | 0.000606 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 5 | 51 | B.1.177 | 0.000066 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 47 | 47 | AY.102 | 0.001246 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 46 | 46 | AY.9.1 | 0.003851 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 46 | 46 | B.1.1.7 | 0.000041 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 45 | 45 | B.1.243 | 0.003131 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 43 | 43 | AY.75 | 0.002409 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 41 | 41 | AY.46.6 | 0.002961 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 41 | 41 | B.1.2 | 0.000361 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 41 | 41 | B.1.311 | 0.011258 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 41 | 41 | P.1 | 0.000646 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 39 | 39 | B.1 | 0.000357 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 39 | 39 | B.1.429 | 0.000918 |
ORF1ab/nsp1 | 27 | L27R | cTc | cGc | 36 | 38 | All | 0.000007 |
ORF1ab/nsp1 | 27 | L27R | cTC | cGA | 2 | 38 | All | 0 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 38 | 38 | AY.100 | 0.001748 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 38 | 38 | AY.9.2 | 0.001396 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 38 | 38 | B.1.221 | 0.002699 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 37 | 37 | AY.44 | 0.000225 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 36 | 36 | B.1.177 | 0.000474 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 35 | 35 | AY.118 | 0.002193 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 34 | 35 | AY.29 | 0.000536 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctG | 1 | 35 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 35 | 35 | B.1.1.7 | 0.000031 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 34 | 34 | AY.4.2 | 0.000737 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctG | 27 | 29 | AY.34 | 0.002618 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 29 | AY.34 | 0.000097 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 1 | 29 | AY.34 | 0.000097 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 29 | 29 | P.4 | 0.110266 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 28 | 28 | B.1.2 | 0.000247 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 24 | 27 | AY.6 | 0.000987 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 3 | 27 | AY.6 | 0.000123 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 26 | 26 | AY.44 | 0.000158 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 25 | 26 | B.1.1 | 0.000454 |
ORF1ab/nsp1 | 27 | L27F | CtC | TtT | 1 | 26 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 25 | 25 | AY.121 | 0.003383 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 23 | 25 | AY.5 | 0.000475 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 2 | 25 | AY.5 | 0.000041 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 25 | 25 | AY.98 | 0.001975 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 25 | 25 | B.1.177.48 | 0.078125 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 23 | 25 | B.1.351 | 0.000684 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctG | 1 | 25 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 1 | 25 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 25 | 25 | C.16 | 0.026511 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 24 | 24 | C.36.3 | 0.013613 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 23 | 23 | B.1.1.519 | 0.000913 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 23 | 23 | B.1.160 | 0.000717 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 22 | 22 | B.1.526 | 0.000517 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 22 | 22 | P.1.16 | 0.00823 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 21 | 21 | AY.47 | 0.000653 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 21 | 21 | B.1.617.2 | 0.000079 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 19 | 19 | AY.102 | 0.000504 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 19 | 19 | AY.3 | 0.000189 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 19 | 19 | AZ.2 | 0.015599 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 19 | 19 | B.1.1.67 | 0.086758 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 19 | 19 | P.1.14 | 0.000908 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 18 | 18 | AY.117 | 0.001521 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 18 | 18 | B.1.177.6 | 0.017578 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 18 | 18 | P.1.7 | 0.005747 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 17 | 17 | B.1.526 | 0.0004 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 16 | 16 | AY.42 | 0.000644 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 16 | 16 | AY.65 | 0.008529 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 11 | 16 | B.1.1.28 | 0.003424 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 5 | 16 | B.1.1.28 | 0.001556 |
ORF1ab/nsp1 | 27 | L27V | Ctc | Gtc | 15 | 15 | All | 0.000003 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 15 | 15 | AY.9 | 0.001014 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 15 | 15 | B.1.177.81 | 0.00284 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 15 | 15 | B.1.36 | 0.002189 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 15 | 15 | B.1.596 | 0.001307 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 14 | 14 | AY.113 | 0.001993 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 14 | 14 | AY.20 | 0.000544 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 14 | 14 | AY.20 | 0.000544 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 13 | 13 | A.2.5 | 0.006487 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 12 | 13 | AY.33 | 0.000801 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctG | 1 | 13 | AY.33 | 0.000067 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 13 | 13 | AY.99.2 | 0.001198 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 13 | 13 | B.1.1.214 | 0.000721 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 13 | 13 | B.1.177.7 | 0.002143 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 13 | 13 | B.1.621 | 0.001151 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 13 | 13 | C.37 | 0.001509 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 12 | 12 | A.2.4 | 0.040404 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 12 | 12 | AY.100 | 0.000552 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 11 | 12 | AY.23 | 0.000767 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctG | 1 | 12 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 12 | 12 | AY.26 | 0.00034 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 12 | 12 | AY.61 | 0.001257 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 12 | 12 | B.1.429 | 0.000282 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 12 | 12 | B.1.525 | 0.001358 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 12 | 12 | P.1.1 | 0.003812 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 11 | 11 | AY.116 | 0.003155 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 11 | 11 | AY.14 | 0.000968 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 11 | 11 | AY.33 | 0.000735 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 11 | 11 | AY.7.2 | 0.006152 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 11 | 11 | B.1.1.222 | 0.002244 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 11 | 11 | B.1.1.519 | 0.000437 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 11 | 11 | B.1.177.86 | 0.002018 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 11 | 11 | B.1.36.29 | 0.005691 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 10 | 10 | A.2.5 | 0.00499 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 10 | 10 | AY.100 | 0.00046 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 10 | 10 | B.1.258 | 0.000665 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 10 | 10 | B.1.466.2 | 0.003912 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 10 | 10 | Q.1 | 0.001263 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 9 | 9 | AY.35 | 0.002097 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 9 | 9 | AY.39 | 0.000222 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 9 | 9 | AY.39.1 | 0.000357 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 9 | 9 | B.1.1.12 | 0.067164 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 9 | 9 | B.1.111 | 0.010576 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 9 | 9 | B.1.3 | 0.02356 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 9 | 9 | B.1.474 | 0.01711 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 9 | 9 | B.1.637 | 0.000658 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 9 | 9 | B.1.637 | 0.000658 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 9 | 9 | D.2 | 0.000675 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 9 | 9 | P.1.15 | 0.002091 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 8 | 8 | AY.13 | 0.001288 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp1 | 27 | L27R | cTc | cGc | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 8 | 8 | B.1.221 | 0.000568 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 8 | 8 | B.1.9 | 0.049383 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 8 | 8 | P.1.14 | 0.000382 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 8 | 8 | P.1.6 | 0.015564 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 7 | B | 0.000767 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 1 | 7 | B | 0.000128 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 7 | 7 | B.1.1.169 | 0.127273 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 7 | 7 | B.1.1.284 | 0.000752 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 7 | 7 | B.1.1.37 | 0.00135 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 7 | 7 | B.1.110.3 | 0.005029 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 7 | 7 | B.1.139 | 0.005132 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 7 | 7 | B.1.177.54 | 0.004245 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 7 | 7 | B.1.214.2 | 0.004197 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 7 | 7 | B.1.241 | 0.005682 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 7 | 7 | B.1.349 | 0.005004 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 7 | 7 | B.1.595 | 0.001827 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 7 | 7 | N.5 | 0.012367 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | AY.12 | 0.001896 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | AY.120.1 | 0.001926 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | AY.5.3 | 0.002024 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | B.1.1.317 | 0.00247 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | B.1.1.397 | 0.013514 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 6 | 6 | B.1.1.63 | 0.002315 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp1 | 27 | L27V | Ctc | Gtc | 6 | 6 | B.1.396 | 0.004234 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 6 | 6 | B.1.400 | 0.002574 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | B.1.517 | 0.002562 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 5 | 5 | AD.2 | 0.001095 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 5 | 5 | AY.24 | 0.002155 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 5 | 5 | AY.85 | 0.002136 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 5 | 5 | B.1.1.192 | 0.011547 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 5 | 5 | B.1.1.285 | 0.03268 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 5 | 5 | B.1.1.294 | 0.006329 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 5 | 5 | B.1.1.304 | 0.014045 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 5 | 5 | B.1.1.369 | 0.002231 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 5 | 5 | B.1.177.54 | 0.003032 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 5 | 5 | B.1.177.57 | 0.001405 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 3 | 5 | B.1.177.73 | 0.001699 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 5 | B.1.177.73 | 0.001133 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 5 | 5 | B.1.177.83 | 0.007407 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 5 | 5 | B.1.391 | 0.005637 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 5 | 5 | B.1.425 | 0.01497 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 5 | 5 | P.1.13 | 0.004492 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | A.21 | 0.01108 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | A.29 | 0.021277 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 4 | 4 | AY.16 | 0.001519 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | AY.22 | 0.008368 |
ORF1ab/nsp1 | 27 | L27R | cTc | cGc | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | AY.34.1 | 0.00204 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp1 | 27 | L27R | cTc | cGc | 4 | 4 | AZ.2 | 0.003284 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.1.153 | 0.004381 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.1.201 | 0.097561 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.1.285 | 0.026144 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 4 | 4 | B.1.1.432 | 0.005063 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 4 | 4 | B.1.1.462 | 0.034483 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.1.464 | 0.005891 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.1.526 | 0.014184 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.177.45 | 0.001525 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.177.79 | 0.009368 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.36.17 | 0.001976 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.36.36 | 0.002408 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.367 | 0.00317 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.425 | 0.011976 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp1 | 27 | L27V | Ctc | Gtc | 4 | 4 | B.1.558 | 0.018265 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 4 | 4 | B.6 | 0.00364 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 4 | P.1.13 | 0.002695 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 1 | 4 | P.1.13 | 0.000898 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp1 | 27 | L27del1 | ctC | ct- | 3 | 3 | All | 0.000001 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.105 | 0.001929 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | AY.22 | 0.006276 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp1 | 27 | L27R | cTc | cGc | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp1 | 27 | L27R | cTc | cGc | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | AY.57 | 0.001969 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | AY.76 | 0.014493 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 3 | 3 | B.1.1.134 | 0.034091 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | B.1.1.207 | 0.003546 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 3 | B.1.1.317 | 0.000823 |
ORF1ab/nsp1 | 27 | L27F | CtC | TtT | 1 | 3 | B.1.1.317 | 0.000412 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | B.1.1.416 | 0.002715 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | B.1.1.453 | 0.025424 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | B.1.177.10 | 0.002634 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctG | 3 | 3 | B.1.177.12 | 0.000455 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | B.1.235 | 0.007557 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | B.1.324 | 0.004815 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | B.1.36.18 | 0.001261 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 3 | B.1.538 | 0.016129 |
ORF1ab/nsp1 | 27 | L27L | CtC | TtG | 1 | 3 | B.1.538 | 0.008065 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 3 | B.1.564 | 0.000852 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctG | 1 | 3 | B.1.564 | 0.000426 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | B.1.565 | 0.002431 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | B.1.625 | 0.007059 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | B.1.9.5 | 0.017045 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 3 | 3 | P.1.10 | 0.000808 |
ORF1ab/nsp1 | 27 | L27F | CtC | TtT | 3 | 3 | P.1.17.1 | 0.002625 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 1 | 2 | A | 0.000387 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 2 | A | 0.000387 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp1 | 27 | L27Y | CTc | TAc | 2 | 2 | All | 0 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | AY.11 | 0.002677 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 1 | 2 | AY.116.1 | 0.000311 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 2 | AY.116.1 | 0.000311 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp1 | 27 | L27R | cTc | cGc | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp1 | 27 | L27Y | CTc | TAc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp1 | 27 | L27V | Ctc | Gtc | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp1 | 27 | L27I | CtC | AtT | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp1 | 27 | L27R | cTC | cGA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp1 | 27 | L27R | cTc | cGc | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp1 | 27 | L27R | cTc | cGc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.1.205 | 0.007435 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.1.258 | 0.006515 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.1.368 | 0.006173 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 2 | B.1.1.37 | 0.000193 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 1 | 2 | B.1.1.37 | 0.000193 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.1.406 | 0.012987 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctG | 1 | 2 | B.1.177.21 | 0.000076 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 2 | B.1.177.21 | 0.000076 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.177.5 | 0.002484 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.199 | 0.008264 |
ORF1ab/nsp1 | 27 | L27R | cTc | cGc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.258.18 | 0.2 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.420 | 0.020833 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.1.638 | 0.105263 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | C.1.2 | 0.008511 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | C.26 | 0.014706 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 2 | 2 | C.4 | 0.02 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 2 | P.1.7 | 0.000319 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctG | 1 | 2 | P.1.7 | 0.000319 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp1 | 27 | L27P | cTC | cCT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 27 | L27del1 | ctC | ct- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp1 | 27 | L27A | CTC | GCT | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 27 | L27del2 | CTc | --c | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp1 | 27 | L27R | cTc | cGc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 27 | L27R | cTc | cGc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.5.1 | 0.003759 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp1 | 27 | L27V | Ctc | Gtc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 27 | L27del1 | ctC | ct- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.242 | 0.043478 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.1.275 | 0.011236 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp1 | 27 | L27R | cTc | cGc | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.328 | 0.016949 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 1 | 1 | B.1.1.350 | 0.04 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | B.1.1.363 | 0.005988 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.373 | 0.02381 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | B.1.1.437 | 0.010417 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.1.59 | 0.006494 |
ORF1ab/nsp1 | 27 | L27V | Ctc | Gtc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.160.21 | 0.020408 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.169 | 0.014925 |
ORF1ab/nsp1 | 27 | L27R | cTc | cGc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.177.28 | 0.007407 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.177.70 | 0.005917 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.181 | 0.019608 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.190 | 0.01 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.211 | 0.025 |
ORF1ab/nsp1 | 27 | L27del2 | CTc | --c | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.245 | 0.03125 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.258.21 | 0.007752 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.344 | 0.008197 |
ORF1ab/nsp1 | 27 | L27R | cTc | cGc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp1 | 27 | L27A | CTC | GCT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.437 | 0.020833 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.466 | 0.023256 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | B.1.515 | 0.014493 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp1 | 27 | L27I | Ctc | Atc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp1 | 27 | L27R | cTc | cGc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp1 | 27 | L27R | cTC | cGA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp1 | 27 | L27R | cTc | cGc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 27 | L27P | cTc | cCc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.38 | 0.02381 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.4.8 | 0.071429 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp1 | 27 | L27V | Ctc | Gtc | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | N.10 | 0.029412 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp1 | 27 | L27H | cTc | cAc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp1 | 27 | L27F | CtC | TtT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp1 | 27 | L27del1 | ctC | ct- | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp1 | 27 | L27F | Ctc | Ttc | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctA | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp1 | 27 | L27L | ctC | ctT | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp1 | 27 | L27del | CTC | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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