CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 24 | R24C | R24C | nonsyn | Cgc | Tgc | 15225 | 15138 | 0.994286 | 335-337 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 15138 | 15225 | All | 0.002895 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1877 | 1892 | Q.4 | 0.85357 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1736 | 1752 | B.1.1.7 | 0.001554 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1714 | 1733 | B.1.221 | 0.12175 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1024 | 1031 | AY.4 | 0.001594 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 856 | 857 | AY.117 | 0.072346 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 691 | 692 | B.1.576 | 0.626473 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 536 | 536 | AY.44 | 0.003263 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 487 | 487 | AY.28 | 0.920605 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 454 | 456 | B.1.617.2 | 0.001709 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 433 | 433 | AY.43 | 0.001918 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 426 | 426 | B.1.574 | 0.916129 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 387 | 387 | AY.103 | 0.002403 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 325 | 325 | B.1 | 0.002977 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 230 | 230 | AY.3 | 0.002288 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 182 | 182 | B.1.177 | 0.002397 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 180 | 180 | B.1.2 | 0.001585 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 173 | 174 | B.1.1 | 0.003138 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 160 | 160 | P.1 | 0.002521 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 143 | 157 | AY.25 | 0.00086 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 137 | 137 | AY.42 | 0.005512 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 124 | 124 | AY.120 | 0.00461 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 117 | 117 | B.1.1.25 | 0.066515 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 115 | 115 | AY.61 | 0.012049 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 110 | 110 | AY.33 | 0.007346 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 85 | 85 | AY.39.1 | 0.003367 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 82 | 82 | B.1.429 | 0.001929 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 79 | 79 | B.1.526 | 0.001857 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 75 | 75 | B.1.36.33 | 0.568182 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 74 | 74 | B.1.351 | 0.0022 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 65 | 65 | B.1.621 | 0.005754 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 61 | 61 | AY.39 | 0.001507 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 58 | 58 | Q.8 | 0.009565 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 56 | 56 | AY.100 | 0.002576 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 56 | 56 | B.1.234 | 0.007389 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 55 | 55 | AY.29 | 0.000868 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 54 | 54 | AY.75 | 0.003025 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 50 | 50 | AY.26 | 0.001416 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 48 | 48 | AY.20 | 0.001866 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 46 | 46 | B.1.177.30 | 0.115578 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 46 | 46 | B.1.36 | 0.006711 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 40 | 40 | P.1.14 | 0.001912 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 38 | 38 | AY.47 | 0.001182 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 35 | 35 | B.1.160 | 0.001092 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 29 | 29 | AY.102 | 0.000769 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 29 | 29 | B.1.177.89 | 0.707317 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 27 | 27 | AY.5 | 0.000558 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 27 | 27 | AY.50 | 0.021583 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 27 | 27 | B.1.363 | 0.350649 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 26 | 26 | AY.119 | 0.000918 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 25 | 25 | AY.15 | 0.055556 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 25 | 25 | AY.34 | 0.002424 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 24 | 24 | AY.99.2 | 0.002212 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 23 | 23 | AY.54 | 0.002193 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 22 | 22 | AY.75.1 | 0.003967 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 22 | 22 | B.1.258 | 0.001464 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 20 | 20 | B.1.570 | 0.058824 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 19 | 19 | AY.14 | 0.001672 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 19 | 19 | AY.4.2 | 0.000412 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 18 | 18 | B.1.1.333 | 0.019376 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 18 | 18 | B.1.177.15 | 0.011356 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 17 | 17 | AY.71 | 0.008076 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 17 | 17 | B.1.160.15 | 0.084158 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 17 | 17 | P.1.15 | 0.00395 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 16 | 16 | B.1.1.222 | 0.003264 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 16 | 16 | B.1.1.316 | 0.014801 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 16 | 16 | B.1.36.29 | 0.008277 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 14 | 14 | AY.118 | 0.000877 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 14 | 14 | AY.98 | 0.001106 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 14 | 14 | B.1.177.81 | 0.002651 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 14 | 14 | B.1.637 | 0.001023 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 14 | 14 | C.26 | 0.102941 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 14 | 14 | C.37 | 0.001625 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 13 | 13 | B.1.240 | 0.002802 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 12 | 12 | AY.46 | 0.001249 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 12 | 12 | B.1.177.60 | 0.002621 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 12 | 12 | B.1.36.26 | 0.034286 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 11 | 11 | AY.27 | 0.000712 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 11 | 11 | AY.4.5 | 0.001182 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 11 | 11 | AY.9.2 | 0.000404 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 11 | 11 | B.1.1.214 | 0.00061 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 11 | 11 | B.1.1.519 | 0.000437 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 11 | 11 | B.1.595 | 0.002871 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 10 | 10 | AY.45 | 0.001217 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 10 | 10 | AY.9 | 0.000676 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 10 | 10 | AY.92 | 0.002873 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 10 | 10 | B.1.177.7 | 0.001649 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 10 | 10 | B.1.427 | 0.000505 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 10 | 10 | B.1.549 | 0.071942 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 10 | 10 | B.1.617.1 | 0.00129 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 9 | 9 | AY.113 | 0.001282 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 9 | 9 | AY.46.4 | 0.001481 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 9 | 9 | AY.6 | 0.00037 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 9 | 9 | AY.68 | 0.002464 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 8 | 8 | AY.35 | 0.001864 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 8 | 8 | AY.36 | 0.001186 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 8 | 8 | AY.74 | 0.000925 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 8 | 8 | B.1.177.57 | 0.002248 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 8 | 8 | B.1.596 | 0.000697 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 7 | 7 | AA.1 | 0.050725 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 4 | 7 | AY.5.4 | 0.001107 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 7 | 7 | AY.62 | 0.00305 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 7 | 7 | AY.7 | 0.001372 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 7 | 7 | AY.84 | 0.003062 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 6 | 7 | B.1.1.216 | 0.005343 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 7 | 7 | B.1.1.217 | 0.025455 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 7 | 7 | B.1.160.28 | 0.020468 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 7 | 7 | B.1.177.43 | 0.01034 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 7 | 7 | B.1.285 | 0.636364 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 7 | 7 | B.1.416 | 0.008883 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 6 | 6 | AY.106 | 0.002009 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 6 | 6 | AY.29.1 | 0.001323 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 6 | 6 | AY.55 | 0.005505 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 6 | 6 | B.1.206 | 0.004894 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 6 | 6 | Q.3 | 0.00087 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 5 | 5 | A.2.5 | 0.002495 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 5 | 5 | AY.13 | 0.000805 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 5 | 5 | AY.2 | 0.001781 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 5 | 5 | AY.38 | 0.002496 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 5 | 5 | B | 0.000639 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 5 | 5 | B.1.177.65 | 0.003327 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 5 | 5 | B.1.179 | 0.018797 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 5 | 5 | B.1.36.22 | 0.006039 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 5 | 5 | B.1.428 | 0.005102 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 5 | 5 | B.1.438.1 | 0.000536 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 5 | 5 | B.1.470 | 0.007022 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 5 | 5 | B.1.623 | 0.002682 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 5 | 5 | W.4 | 0.006757 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 4 | 4 | AY.101 | 0.001962 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 4 | 4 | AY.19 | 0.004561 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 4 | 4 | B.1.158 | 0.095238 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 4 | 4 | B.1.177.73 | 0.002265 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 4 | 4 | B.1.342 | 0.4 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 4 | 4 | B.29 | 0.014035 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 4 | 4 | C.18 | 0.010363 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 4 | 4 | P.1.10 | 0.001078 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 4 | 4 | P.1.17 | 0.000647 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | AY.48 | 0.001395 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | B.1.1.166 | 0.1 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | B.1.160.14 | 0.006356 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | B.1.177.16 | 0.001993 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | B.1.346 | 0.003932 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | B.1.351.3 | 0.002629 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | B.1.389 | 0.003006 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | B.1.541 | 0.013274 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | B.1.582 | 0.001472 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | B.1.587 | 0.005693 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | B.1.621.1 | 0.001517 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | B.4 | 0.006623 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 3 | P.3 | 0.00319 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | 0.111111 | |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | AY.4.1 | 0.001475 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.1.337 | 0.007194 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.201 | 0.011364 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.258.16 | 0.003273 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.3 | 0.005236 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.516 | 0.003914 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.523 | 0.004902 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.547 | 0.04878 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.591 | 0.021277 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 2 | 2 | C.23 | 0.011628 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | A.16 | 0.016129 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.118 | 0.010204 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.15 | 0.013514 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.169 | 0.018182 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.310 | 0.015152 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.353 | 0.020833 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.120 | 0.007692 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.177.29 | 0.066667 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.177.64 | 0.090909 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.318 | 0.038462 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.428.3 | 0.012821 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.493 | 0.025641 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.545 | 0.014493 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp1 | 24 | R24C | Cgc | Tgc | 1 | 1 | Q.2 | 0.000613 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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