CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 24 & Codon = TgT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp124R24CR24CnonsynCgCTgT15225870.00571429335-337

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp124R24CCgCTgT8715225All0.000017
ORF1ab/nsp124R24CCgCTgT151892Q.40.006821
ORF1ab/nsp124R24CCgCTgT161752B.1.1.70.000014
ORF1ab/nsp124R24CCgCTgT191733B.1.2210.00135
ORF1ab/nsp124R24CCgCTgT71031AY.40.000011
ORF1ab/nsp124R24CCgCTgT1857AY.1170.000085
ORF1ab/nsp124R24CCgCTgT1692B.1.5760.000907
ORF1ab/nsp124R24CCgCTgT2456B.1.617.20.000008
ORF1ab/nsp124R24CCgCTgT1174B.1.10.000018
ORF1ab/nsp124R24CCgCTgT14157AY.250.000084
ORF1ab/nsp124R24CCgCTgT37AY.5.40.00083
ORF1ab/nsp124R24CCgCTgT17B.1.1.2160.00089
ORF1ab/nsp124R24CCgCTgT66A.23.10.004225
ORF1ab/nsp124R24CCgCTgT13P.30.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.