CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 180 & Codon = ggT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1180G180GG180GsynggGggT462231280.676763803-805

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1180G180GggGggT31284622All0.000598
ORF1ab/nsp1180G180GggGggT13501447AY.40.002101
ORF1ab/nsp1180G180GggGggT961961B.1.214.20.576139
ORF1ab/nsp1180G180GggGggT160371B.1.1.70.000143
ORF1ab/nsp1180G180GggGggT63342B.1.617.20.000237
ORF1ab/nsp1180G180GggGggT6119B.1.2210.000426
ORF1ab/nsp1180G180GggGggT92110AY.470.002862
ORF1ab/nsp1180G180GggGggT985B.1.20.000079
ORF1ab/nsp1180G180GggGggT5480B.1.10.00098
ORF1ab/nsp1180G180GggGggT2860AY.430.000124
ORF1ab/nsp1180G180GggGggT551AY.1000.00023
ORF1ab/nsp1180G180GggGggT2248B.10.000202
ORF1ab/nsp1180G180GggGggT4646B.1.5510.059355
ORF1ab/nsp1180G180GggGggT4244B.1.4290.000988
ORF1ab/nsp1180G180GggGggT243AY.980.000158
ORF1ab/nsp1180G180GggGggT1237AY.440.000073
ORF1ab/nsp1180G180GggGggT237P.10.000032
ORF1ab/nsp1180G180GggGggT136AY.350.000233
ORF1ab/nsp1180G180GggGggT3434AY.4.20.000737
ORF1ab/nsp1180G180GggGggT1629AY.1020.000424
ORF1ab/nsp1180G180GggGggT2429AY.9.10.002009
ORF1ab/nsp1180G180GggGggT429B.1.5250.000453
ORF1ab/nsp1180G180GggGggT1228AY.250.000072
ORF1ab/nsp1180G180GggGggT1123AY.30.000109
ORF1ab/nsp1180G180GggGggT918AY.1030.000056
ORF1ab/nsp1180G180GggGggT1818B.1.214.30.128571
ORF1ab/nsp1180G180GggGggT1718B.1.5260.0004
ORF1ab/nsp1180G180GggGggT112B.1.3510.00003
ORF1ab/nsp1180G180GggGggT411AY.39.10.000158
ORF1ab/nsp1180G180GggGggT110AY.16.10.00047
ORF1ab/nsp1180G180GggGggT110AY.290.000016
ORF1ab/nsp1180G180GggGggT810AY.420.000322
ORF1ab/nsp1180G180GggGggT99AY.4.40.003682
ORF1ab/nsp1180G180GggGggT29B.1.1.2140.000111
ORF1ab/nsp1180G180GggGggT28AY.390.000049
ORF1ab/nsp1180G180GggGggT38B.1.1770.00004
ORF1ab/nsp1180G180GggGggT48B.1.2580.000266
ORF1ab/nsp1180G180GggGggT67AY.50.000124
ORF1ab/nsp1180G180GggGggT77B.1.177.210.000535
ORF1ab/nsp1180G180GggGggT36AY.330.0002
ORF1ab/nsp1180G180GggGggT36AY.340.000291
ORF1ab/nsp1180G180GggGggT36AY.98.10.000145
ORF1ab/nsp1180G180GggGggT15AY.230.00007
ORF1ab/nsp1180G180GggGggT55AY.60.000206
ORF1ab/nsp1180G180GggGggT55B.1.4220.004062
ORF1ab/nsp1180G180GggGggT34AY.200.000117
ORF1ab/nsp1180G180GggGggT34AY.4.2.10.000447
ORF1ab/nsp1180G180GggGggT23AY.1200.000074
ORF1ab/nsp1180G180GggGggT33AY.220.006276
ORF1ab/nsp1180G180GggGggT13AY.450.000122
ORF1ab/nsp1180G180GggGggT23B.1.2430.000139
ORF1ab/nsp1180G180GggGggT33Q.80.000495
ORF1ab/nsp1180G180GggGggT22A.2.50.000998
ORF1ab/nsp1180G180GggGggT12AY.460.000104
ORF1ab/nsp1180G180GggGggT12AY.70.000196
ORF1ab/nsp1180G180GggGggT12AY.99.20.000092
ORF1ab/nsp1180G180GggGggT22B.1.214.10.04
ORF1ab/nsp1180G180GggGggT12B.1.36.290.000517
ORF1ab/nsp1180G180GggGggT22B.1.3670.001585
ORF1ab/nsp1180G180GggGggT22B.1.617.10.000258
ORF1ab/nsp1180G180GggGggT22B.1.6370.000146
ORF1ab/nsp1180G180GggGggT11AY.1190.000035
ORF1ab/nsp1180G180GggGggT11AY.1210.000135
ORF1ab/nsp1180G180GggGggT11AY.300.000396
ORF1ab/nsp1180G180GggGggT11AY.46.60.000072
ORF1ab/nsp1180G180GggGggT11AY.600.000938
ORF1ab/nsp1180G180GggGggT11AY.700.000209
ORF1ab/nsp1180G180GggGggT11B.1.1.250.000569
ORF1ab/nsp1180G180GggGggT11B.1.1.4580.041667
ORF1ab/nsp1180G180GggGggT11B.1.1.5190.00004
ORF1ab/nsp1180G180GggGggT11B.1.1.5280.004808
ORF1ab/nsp1180G180GggGggT11B.1.177.160.000664
ORF1ab/nsp1180G180GggGggT11B.1.177.440.000519
ORF1ab/nsp1180G180GggGggT11B.1.258.110.000396
ORF1ab/nsp1180G180GggGggT11B.1.258.160.001637
ORF1ab/nsp1180G180GggGggT11B.1.3010.005917
ORF1ab/nsp1180G180GggGggT11B.1.3560.001727
ORF1ab/nsp1180G180GggGggT11B.1.3960.000706
ORF1ab/nsp1180G180GggGggT11B.1.4040.001302
ORF1ab/nsp1180G180GggGggT11B.1.4160.001269
ORF1ab/nsp1180G180GggGggT11B.1.416.10.001563
ORF1ab/nsp1180G180GggGggT11B.1.4350.011364
ORF1ab/nsp1180G180GggGggT11B.1.4970.000315
ORF1ab/nsp1180G180GggGggT11B.1.5150.014493
ORF1ab/nsp1180G180GggGggT11B.1.5500.013699
ORF1ab/nsp1180G180GggGggT11B.550.00295
ORF1ab/nsp1180G180GggGggT11C.370.000116
ORF1ab/nsp1180G180GggGggT11Q.20.000613
ORF1ab/nsp1180G180GggGggT11Q.30.000145
ORF1ab/nsp1180G180GggGggT11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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