CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 180 & Codon = ggA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1180G180GG180GsynggGggA462214920.322804803-805

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1180G180GggGggA14924622All0.000285
ORF1ab/nsp1180G180GggGggA971447AY.40.000151
ORF1ab/nsp1180G180GggGggA211371B.1.1.70.000189
ORF1ab/nsp1180G180GggGggA278342B.1.617.20.001047
ORF1ab/nsp1180G180GggGggA113119B.1.2210.008027
ORF1ab/nsp1180G180GggGggA18110AY.470.00056
ORF1ab/nsp1180G180GggGggA9494B.1.6210.008321
ORF1ab/nsp1180G180GggGggA7685B.1.20.000669
ORF1ab/nsp1180G180GggGggA2680B.1.10.000472
ORF1ab/nsp1180G180GggGggA3260AY.430.000142
ORF1ab/nsp1180G180GggGggA4651AY.1000.002116
ORF1ab/nsp1180G180GggGggA2648B.10.000238
ORF1ab/nsp1180G180GggGggA244B.1.4290.000047
ORF1ab/nsp1180G180GggGggA4143AY.980.003239
ORF1ab/nsp1180G180GggGggA2537AY.440.000152
ORF1ab/nsp1180G180GggGggA3537P.10.000551
ORF1ab/nsp1180G180GggGggA3536AY.350.008157
ORF1ab/nsp1180G180GggGggA1329AY.1020.000345
ORF1ab/nsp1180G180GggGggA529AY.9.10.000419
ORF1ab/nsp1180G180GggGggA2529B.1.5250.002829
ORF1ab/nsp1180G180GggGggA1628AY.250.000096
ORF1ab/nsp1180G180GggGggA2626AY.10.010289
ORF1ab/nsp1180G180GggGggA1223AY.30.000119
ORF1ab/nsp1180G180GggGggA2222AY.1140.005084
ORF1ab/nsp1180G180GggGggA918AY.1030.000056
ORF1ab/nsp1180G180GggGggA118B.1.5260.000024
ORF1ab/nsp1180G180GggGggA1112B.1.3510.000327
ORF1ab/nsp1180G180GggGggA711AY.39.10.000277
ORF1ab/nsp1180G180GggGggA910AY.16.10.004229
ORF1ab/nsp1180G180GggGggA910AY.290.000142
ORF1ab/nsp1180G180GggGggA210AY.420.00008
ORF1ab/nsp1180G180GggGggA99AY.850.003845
ORF1ab/nsp1180G180GggGggA79B.1.1.2140.000388
ORF1ab/nsp1180G180GggGggA99B.1.177.540.005458
ORF1ab/nsp1180G180GggGggA68AY.390.000148
ORF1ab/nsp1180G180GggGggA58B.1.1770.000066
ORF1ab/nsp1180G180GggGggA48B.1.2580.000266
ORF1ab/nsp1180G180GggGggA17AY.50.000021
ORF1ab/nsp1180G180GggGggA36AY.330.0002
ORF1ab/nsp1180G180GggGggA36AY.340.000291
ORF1ab/nsp1180G180GggGggA66AY.480.002791
ORF1ab/nsp1180G180GggGggA36AY.98.10.000145
ORF1ab/nsp1180G180GggGggA45AY.230.000279
ORF1ab/nsp1180G180GggGggA44AY.130.000644
ORF1ab/nsp1180G180GggGggA14AY.200.000039
ORF1ab/nsp1180G180GggGggA14AY.4.2.10.000149
ORF1ab/nsp1180G180GggGggA44B.1.4270.000202
ORF1ab/nsp1180G180GggGggA44B.1.5960.000349
ORF1ab/nsp1180G180GggGggA33A.2.30.014218
ORF1ab/nsp1180G180GggGggA13AY.1200.000037
ORF1ab/nsp1180G180GggGggA23AY.450.000243
ORF1ab/nsp1180G180GggGggA33AY.5.30.001012
ORF1ab/nsp1180G180GggGggA33AY.530.000863
ORF1ab/nsp1180G180GggGggA33AY.680.000821
ORF1ab/nsp1180G180GggGggA33AY.9.20.00011
ORF1ab/nsp1180G180GggGggA33B.1.177.730.001699
ORF1ab/nsp1180G180GggGggA13B.1.2430.00007
ORF1ab/nsp1180G180GggGggA33P.1.140.000143
ORF1ab/nsp1180G180GggGggA22AY.1080.002205
ORF1ab/nsp1180G180GggGggA22AY.160.000759
ORF1ab/nsp1180G180GggGggA12AY.460.000104
ORF1ab/nsp1180G180GggGggA22AY.520.001629
ORF1ab/nsp1180G180GggGggA22AY.590.001059
ORF1ab/nsp1180G180GggGggA12AY.70.000196
ORF1ab/nsp1180G180GggGggA22AY.720.002721
ORF1ab/nsp1180G180GggGggA12AY.99.20.000092
ORF1ab/nsp1180G180GggGggA22B.1.1.2410.004141
ORF1ab/nsp1180G180GggGggA22B.1.1.4340.000697
ORF1ab/nsp1180G180GggGggA22B.1.177.570.000562
ORF1ab/nsp1180G180GggGggA22B.1.2400.000431
ORF1ab/nsp1180G180GggGggA22B.1.258.140.001961
ORF1ab/nsp1180G180GggGggA12B.1.36.290.000517
ORF1ab/nsp1180G180GggGggA22B.3.10.003317
ORF1ab/nsp1180G180GggGggA22C.160.002121
ORF1ab/nsp1180G180GggGggA22P.1.120.000968
ORF1ab/nsp1180G180GggGggA22P.1.160.000748
ORF1ab/nsp1180G180GggGggA22P.60.006289
ORF1ab/nsp1180G180GggGggA11A.2.20.001689
ORF1ab/nsp1180G180GggGggA11A.230.010526
ORF1ab/nsp1180G180GggGggA11A.30.002096
ORF1ab/nsp1180G180GggGggA11AY.1180.000063
ORF1ab/nsp1180G180GggGggA11AY.260.000028
ORF1ab/nsp1180G180GggGggA11AY.370.000316
ORF1ab/nsp1180G180GggGggA11AY.46.30.000934
ORF1ab/nsp1180G180GggGggA11AY.710.000475
ORF1ab/nsp1180G180GggGggA11AY.750.000056
ORF1ab/nsp1180G180GggGggA11AY.770.001127
ORF1ab/nsp1180G180GggGggA11AY.930.000273
ORF1ab/nsp1180G180GggGggA11B0.000128
ORF1ab/nsp1180G180GggGggA11B.1.1.1410.002012
ORF1ab/nsp1180G180GggGggA11B.1.1.2200.001859
ORF1ab/nsp1180G180GggGggA11B.1.1.2220.000204
ORF1ab/nsp1180G180GggGggA11B.1.1.280.000311
ORF1ab/nsp1180G180GggGggA11B.1.1.3110.000358
ORF1ab/nsp1180G180GggGggA11B.1.1.3480.000796
ORF1ab/nsp1180G180GggGggA11B.1.1600.000031
ORF1ab/nsp1180G180GggGggA11B.1.177.150.000631
ORF1ab/nsp1180G180GggGggA11B.1.2190.009434
ORF1ab/nsp1180G180GggGggA11B.1.2340.000132
ORF1ab/nsp1180G180GggGggA11B.1.258.170.000104
ORF1ab/nsp1180G180GggGggA11B.1.350.008475
ORF1ab/nsp1180G180GggGggA11B.1.3690.000285
ORF1ab/nsp1180G180GggGggA11B.1.3980.002976
ORF1ab/nsp1180G180GggGggA11B.1.3990.001934
ORF1ab/nsp1180G180GggGggA11B.1.4530.003236
ORF1ab/nsp1180G180GggGggA11B.1.466.20.000391
ORF1ab/nsp1180G180GggGggA11B.1.5300.007143
ORF1ab/nsp1180G180GggGggA11B.1.5560.007519
ORF1ab/nsp1180G180GggGggA11B.1.5760.000907
ORF1ab/nsp1180G180GggGggA11B.1.5800.004065
ORF1ab/nsp1180G180GggGggA11B.1.6190.000871
ORF1ab/nsp1180G180GggGggA11B.280.003279
ORF1ab/nsp1180G180GggGggA11P.1.10.10.00813
ORF1ab/nsp1180G180GggGggA11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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