CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 170 & Codon = aAc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1170T170NT170NnonsynaCcaAc2562561773-775

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1170T170NaCcaAc256256All0.000049
ORF1ab/nsp1170T170NaCcaAc131131B.1.6320.879195
ORF1ab/nsp1170T170NaCcaAc2929AY.200.001127
ORF1ab/nsp1170T170NaCcaAc2424AY.40.000037
ORF1ab/nsp1170T170NaCcaAc1010AY.90.000676
ORF1ab/nsp1170T170NaCcaAc88B.10.000073
ORF1ab/nsp1170T170NaCcaAc88B.1.1770.000105
ORF1ab/nsp1170T170NaCcaAc77AY.1060.002344
ORF1ab/nsp1170T170NaCcaAc77B.1.2580.000466
ORF1ab/nsp1170T170NaCcaAc44AY.30.00004
ORF1ab/nsp1170T170NaCcaAc44B.1.1.70.000004
ORF1ab/nsp1170T170NaCcaAc33B.1.617.20.000011
ORF1ab/nsp1170T170NaCcaAc22AY.1200.000074
ORF1ab/nsp1170T170NaCcaAc22AY.250.000012
ORF1ab/nsp1170T170NaCcaAc22AY.440.000012
ORF1ab/nsp1170T170NaCcaAc22B.1.4270.000101
ORF1ab/nsp1170T170NaCcaAc22B.1.6210.000177
ORF1ab/nsp1170T170NaCcaAc22B.1.6230.001073
ORF1ab/nsp1170T170NaCcaAc11AY.1130.000142
ORF1ab/nsp1170T170NaCcaAc11AY.290.000016
ORF1ab/nsp1170T170NaCcaAc11AY.390.000025
ORF1ab/nsp1170T170NaCcaAc11AY.430.000004
ORF1ab/nsp1170T170NaCcaAc11AZ.10.000867
ORF1ab/nsp1170T170NaCcaAc11B.1.10.000018
ORF1ab/nsp1170T170NaCcaAc11B.1.2060.000816
ORF1ab/nsp1170T170NaCcaAc11B.1.4430.004673
ORF1ab/nsp1170T170NaCcaAc11B.1.5960.000087

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.