CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 160

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1160N160NN160NsynaaCaaT28675286751743-745
ORF1ab/nsp1160N160SN160SnonsynaAcaGc2182160.990826743-745
ORF1ab/nsp1160N160SN160SnonsynAACTCT21810.00458716743-745
ORF1ab/nsp1160N160SN160SnonsynAAcTCc21810.00458716743-745
ORF1ab/nsp1160N160KN160KnonsynaaCaaA1711680.982456743-745
ORF1ab/nsp1160N160KN160KnonsynaaCaaG17130.0175439743-745
ORF1ab/nsp1160N160delN160deldelAAC---1291291743-745
ORF1ab/nsp1160N160HN160HnonsynAacCac78781743-745
ORF1ab/nsp1160N160DN160DnonsynAacGac51500.980392743-745
ORF1ab/nsp1160N160DN160DnonsynAaCGaT5110.0196078743-745
ORF1ab/nsp1160N160TN160TnonsynaAcaCc28281743-745
ORF1ab/nsp1160N160YN160YnonsynAacTac881743-745
ORF1ab/nsp1160N160IN160InonsynaAcaTc551743-745
ORF1ab/nsp1160N160del2N160del2delaACa--221743-745
ORF1ab/nsp1160N160LN160LnonsynAAcCTc210.5743-745
ORF1ab/nsp1160N160LN160LnonsynAACCTT210.5743-745
ORF1ab/nsp1160N160PN160PnonsynAACCCT210.5743-745
ORF1ab/nsp1160N160FN160FnonsynAACTTT210.5743-745
ORF1ab/nsp1160N160PN160PnonsynAAcCCc210.5743-745
ORF1ab/nsp1160N160FN160FnonsynAAcTTc210.5743-745
ORF1ab/nsp1160N160del1N160del1delaaCaa-111743-745

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1160N160NaaCaaT2867528675All0.005484
ORF1ab/nsp1160N160NaaCaaT93089308B.1.617.20.035048
ORF1ab/nsp1160N160NaaCaaT60606060AY.1020.160675
ORF1ab/nsp1160N160NaaCaaT20222022AY.40.003147
ORF1ab/nsp1160N160NaaCaaT17311731B.1.1.70.00155
ORF1ab/nsp1160N160NaaCaaT10411041AY.440.006336
ORF1ab/nsp1160N160NaaCaaT826826AY.430.00366
ORF1ab/nsp1160N160NaaCaaT781781B.1.1.5190.031014
ORF1ab/nsp1160N160NaaCaaT647647AY.390.015988
ORF1ab/nsp1160N160NaaCaaT442442AY.1080.487321
ORF1ab/nsp1160N160NaaCaaT405405AY.1040.803571
ORF1ab/nsp1160N160NaaCaaT387387B.1.20.003408
ORF1ab/nsp1160N160NaaCaaT280280AY.9.20.010284
ORF1ab/nsp1160N160NaaCaaT254254AY.860.210788
ORF1ab/nsp1160N160NaaCaaT245245B.1.3510.007283
ORF1ab/nsp1160N160NaaCaaT228228AY.250.001371
ORF1ab/nsp1160N160NaaCaaT222222P.1.140.010612
ORF1ab/nsp1160N160SaAcaGc216218All0.000041
ORF1ab/nsp1160N160SAACTCT1218All0
ORF1ab/nsp1160N160SAAcTCc1218All0
ORF1ab/nsp1160N160NaaCaaT212212AY.1030.001316
ORF1ab/nsp1160N160KaaCaaA168171All0.000032
ORF1ab/nsp1160N160KaaCaaG3171All0.000001
ORF1ab/nsp1160N160NaaCaaT164164AY.460.017069
ORF1ab/nsp1160N160NaaCaaT154154AY.420.006195
ORF1ab/nsp1160N160delAAC---129129All0.000025
ORF1ab/nsp1160N160NaaCaaT128128B.10.001172
ORF1ab/nsp1160N160NaaCaaT124124P.10.001953
ORF1ab/nsp1160N160NaaCaaT119119AY.450.01448
ORF1ab/nsp1160N160NaaCaaT105105AY.1170.008874
ORF1ab/nsp1160N160SaAcaGc105105B.1.1.70.000094
ORF1ab/nsp1160N160NaaCaaT9595AY.1180.005952
ORF1ab/nsp1160N160NaaCaaT9595C.1.20.404255
ORF1ab/nsp1160N160NaaCaaT8989B.1.10.001615
ORF1ab/nsp1160N160HAacCac7878All0.000015
ORF1ab/nsp1160N160NaaCaaT7171AY.34.10.036206
ORF1ab/nsp1160N160NaaCaaT6969B.1.1770.000909
ORF1ab/nsp1160N160HAacCac6767AY.1030.000416
ORF1ab/nsp1160N160NaaCaaT6666AY.30.000656
ORF1ab/nsp1160N160NaaCaaT6666AY.50.001363
ORF1ab/nsp1160N160NaaCaaT6666B.1.1600.002058
ORF1ab/nsp1160N160NaaCaaT6363AY.260.001784
ORF1ab/nsp1160N160NaaCaaT6161AY.1190.002154
ORF1ab/nsp1160N160NaaCaaT5858AY.5.30.019568
ORF1ab/nsp1160N160NaaCaaT5656B.1.1.4850.933333
ORF1ab/nsp1160N160NaaCaaT5252AY.980.004108
ORF1ab/nsp1160N160DAacGac5051All0.00001
ORF1ab/nsp1160N160DAaCGaT151All0
ORF1ab/nsp1160N160NaaCaaT5050AY.1000.0023
ORF1ab/nsp1160N160NaaCaaT4848AY.46.40.007896
ORF1ab/nsp1160N160NaaCaaT4343AY.330.002871
ORF1ab/nsp1160N160NaaCaaT4242AY.99.20.003871
ORF1ab/nsp1160N160NaaCaaT4141AY.46.50.008135
ORF1ab/nsp1160N160NaaCaaT4040B.1.1.3170.016468
ORF1ab/nsp1160N160NaaCaaT3939AY.75.10.007032
ORF1ab/nsp1160N160NaaCaaT3939B.1.4290.000918
ORF1ab/nsp1160N160NaaCaaT3838AY.1160.010898
ORF1ab/nsp1160N160NaaCaaT3838AY.200.001477
ORF1ab/nsp1160N160NaaCaaT3232AY.230.002232
ORF1ab/nsp1160N160TaAcaCc2828All0.000005
ORF1ab/nsp1160N160NaaCaaT2626AY.1110.004762
ORF1ab/nsp1160N160NaaCaaT2626B.1.258.170.002703
ORF1ab/nsp1160N160NaaCaaT2525AY.550.022936
ORF1ab/nsp1160N160KaaCaaA2525B.1.20.00022
ORF1ab/nsp1160N160SaAcaGc2525P.1.140.001195
ORF1ab/nsp1160N160KaaCaaA2324B.1.1.70.000021
ORF1ab/nsp1160N160KaaCaaG124B.1.1.70.000001
ORF1ab/nsp1160N160NaaCaaT2222AY.840.009624
ORF1ab/nsp1160N160NaaCaaT2121AY.39.10.000832
ORF1ab/nsp1160N160NaaCaaT2121AY.46.20.013342
ORF1ab/nsp1160N160NaaCaaT2121AY.470.000653
ORF1ab/nsp1160N160NaaCaaT2121AY.750.001176
ORF1ab/nsp1160N160delAAC---2121B.1.1.70.000019
ORF1ab/nsp1160N160KaaCaaA2020AY.1020.00053
ORF1ab/nsp1160N160NaaCaaT2020AY.410.005879
ORF1ab/nsp1160N160NaaCaaT2020AY.990.020986
ORF1ab/nsp1160N160NaaCaaT2020B.1.5870.037951
ORF1ab/nsp1160N160NaaCaaT1919AY.1060.006363
ORF1ab/nsp1160N160NaaCaaT1919AY.290.0003
ORF1ab/nsp1160N160NaaCaaT1919AY.4.30.015993
ORF1ab/nsp1160N160SaAcaGc1919AY.690.003547
ORF1ab/nsp1160N160NaaCaaT1919AY.98.10.00092
ORF1ab/nsp1160N160NaaCaaT1919B.1.4090.014844
ORF1ab/nsp1160N160NaaCaaT1818AY.1100.002028
ORF1ab/nsp1160N160NaaCaaT1818AY.120.10.005778
ORF1ab/nsp1160N160NaaCaaT1818AY.740.002082
ORF1ab/nsp1160N160KaaCaaA1818B.1.617.20.000068
ORF1ab/nsp1160N160KaaCaaA1717AY.30.000169
ORF1ab/nsp1160N160NaaCaaT1717AY.770.019166
ORF1ab/nsp1160N160NaaCaaT1717B.1.160.290.07173
ORF1ab/nsp1160N160NaaCaaT1717C.370.001973
ORF1ab/nsp1160N160NaaCaaT1616AY.4.20.000347
ORF1ab/nsp1160N160NaaCaaT1616AY.5.40.004427
ORF1ab/nsp1160N160NaaCaaT1616AY.640.009524
ORF1ab/nsp1160N160NaaCaaT1616AY.920.004596
ORF1ab/nsp1160N160NaaCaaT1515AY.340.001454
ORF1ab/nsp1160N160delAAC---1515AY.40.000023
ORF1ab/nsp1160N160KaaCaaA1515AY.40.000023
ORF1ab/nsp1160N160NaaCaaT1515B.1.438.10.001609
ORF1ab/nsp1160N160NaaCaaT1515B.1.5960.001307
ORF1ab/nsp1160N160NaaCaaT1515C.36.3.10.040761
ORF1ab/nsp1160N160NaaCaaT1414AY.1050.009003
ORF1ab/nsp1160N160NaaCaaT1414AY.870.011657
ORF1ab/nsp1160N160NaaCaaT1313AY.1140.003004
ORF1ab/nsp1160N160NaaCaaT1313B.1.177.810.002461
ORF1ab/nsp1160N160NaaCaaT1313B.1.4690.046931
ORF1ab/nsp1160N160NaaCaaT1212AY.1210.001624
ORF1ab/nsp1160N160NaaCaaT1212AY.3.10.001023
ORF1ab/nsp1160N160delAAC---1212AY.90.000811
ORF1ab/nsp1160N160TaAcaCc1212B.1.1770.000158
ORF1ab/nsp1160N160NaaCaaT1212B.1.177.230.038835
ORF1ab/nsp1160N160NaaCaaT1212B.1.177.550.027972
ORF1ab/nsp1160N160NaaCaaT1212B.1.5610.004764
ORF1ab/nsp1160N160NaaCaaT1212B.1.5820.005888
ORF1ab/nsp1160N160NaaCaaT1212Q.80.001979
ORF1ab/nsp1160N160NaaCaaT1111AY.500.008793
ORF1ab/nsp1160N160NaaCaaT1111AY.780.016949
ORF1ab/nsp1160N160NaaCaaT1111B.1.360.001605
ORF1ab/nsp1160N160DAacGac1111B.1.5750.003337
ORF1ab/nsp1160N160NaaCaaT1111B.1.6370.000804
ORF1ab/nsp1160N160NaaCaaT1010AY.140.00088
ORF1ab/nsp1160N160SaAcaGc1010AY.450.001217
ORF1ab/nsp1160N160NaaCaaT1010AY.46.60.000722
ORF1ab/nsp1160N160NaaCaaT1010AY.560.016051
ORF1ab/nsp1160N160NaaCaaT1010AY.850.004272
ORF1ab/nsp1160N160NaaCaaT1010B.1.110.30.007184
ORF1ab/nsp1160N160NaaCaaT1010B.1.5260.000235
ORF1ab/nsp1160N160NaaCaaT1010Q.10.001263
ORF1ab/nsp1160N160NaaCaaT99AY.1200.000335
ORF1ab/nsp1160N160NaaCaaT99AY.4.50.000967
ORF1ab/nsp1160N160delAAC---99AY.430.00004
ORF1ab/nsp1160N160NaaCaaT99AY.46.10.00924
ORF1ab/nsp1160N160NaaCaaT99AY.800.010158
ORF1ab/nsp1160N160NaaCaaT99AY.900.00616
ORF1ab/nsp1160N160NaaCaaT99B.1.1.630.003472
ORF1ab/nsp1160N160NaaCaaT99B.1.2210.000639
ORF1ab/nsp1160N160NaaCaaT99B.1.2430.000626
ORF1ab/nsp1160N160YAacTac88All0.000002
ORF1ab/nsp1160N160delAAC---88AY.440.000049
ORF1ab/nsp1160N160NaaCaaT88AY.580.00726
ORF1ab/nsp1160N160NaaCaaT88AY.610.000838
ORF1ab/nsp1160N160NaaCaaT88AY.7.10.000902
ORF1ab/nsp1160N160NaaCaaT88B.1.1.2840.000859
ORF1ab/nsp1160N160NaaCaaT88B.1.177.600.001747
ORF1ab/nsp1160N160NaaCaaT88B.1.2580.000532
ORF1ab/nsp1160N160NaaCaaT88B.1.4270.000404
ORF1ab/nsp1160N160NaaCaaT88P.1.120.003872
ORF1ab/nsp1160N160SaAcaGc77AY.250.000042
ORF1ab/nsp1160N160delAAC---77AY.250.000042
ORF1ab/nsp1160N160NaaCaaT77AY.590.003708
ORF1ab/nsp1160N160NaaCaaT77B.1.1.2140.000388
ORF1ab/nsp1160N160DAacGac77B.1.1.70.000006
ORF1ab/nsp1160N160NaaCaaT77B.1.177.210.000535
ORF1ab/nsp1160N160NaaCaaT77B.1.214.20.004197
ORF1ab/nsp1160N160NaaCaaT77B.1.36.80.007
ORF1ab/nsp1160N160NaaCaaT77B.1.575.10.017073
ORF1ab/nsp1160N160NaaCaaT77P.1.170.001132
ORF1ab/nsp1160N160NaaCaaT66AY.240.002586
ORF1ab/nsp1160N160NaaCaaT66AY.320.003195
ORF1ab/nsp1160N160NaaCaaT66AY.360.000889
ORF1ab/nsp1160N160NaaCaaT66B0.000767
ORF1ab/nsp1160N160KaaCaaA66B.10.000055
ORF1ab/nsp1160N160NaaCaaT66B.1.1.280.001867
ORF1ab/nsp1160N160NaaCaaT66B.1.3960.004234
ORF1ab/nsp1160N160NaaCaaT66B.1.617.10.000774
ORF1ab/nsp1160N160delAAC---66B.1.617.20.000023
ORF1ab/nsp1160N160NaaCaaT66B.1.6210.000531
ORF1ab/nsp1160N160NaaCaaT66C.110.06383
ORF1ab/nsp1160N160NaaCaaT66C.36.30.003403
ORF1ab/nsp1160N160NaaCaaT66R.10.00054
ORF1ab/nsp1160N160IaAcaTc55All0.000001
ORF1ab/nsp1160N160NaaCaaT55AY.10.001979
ORF1ab/nsp1160N160SaAcaGc55AY.29.10.001103
ORF1ab/nsp1160N160SaAcaGc55AY.40.000008
ORF1ab/nsp1160N160NaaCaaT55AY.60.000206
ORF1ab/nsp1160N160NaaCaaT55AY.680.001369
ORF1ab/nsp1160N160NaaCaaT55AY.890.02451
ORF1ab/nsp1160N160NaaCaaT55AY.90.000338
ORF1ab/nsp1160N160NaaCaaT55AZ.30.007599
ORF1ab/nsp1160N160NaaCaaT55B.1.1.4340.001743
ORF1ab/nsp1160N160NaaCaaT55B.1.2340.00066
ORF1ab/nsp1160N160SaAcaGc35B.1.617.20.000011
ORF1ab/nsp1160N160SAACTCT15B.1.617.20.000004
ORF1ab/nsp1160N160SAAcTCc15B.1.617.20.000004
ORF1ab/nsp1160N160NaaCaaT55B.1.6280.001762
ORF1ab/nsp1160N160DAacGac55P.10.000079
ORF1ab/nsp1160N160DAacGac44AY.1090.002959
ORF1ab/nsp1160N160NaaCaaT44AY.110.005355
ORF1ab/nsp1160N160NaaCaaT44AY.170.032787
ORF1ab/nsp1160N160NaaCaaT44AY.190.004561
ORF1ab/nsp1160N160SaAcaGc44AY.440.000024
ORF1ab/nsp1160N160KaaCaaA44AY.50.000083
ORF1ab/nsp1160N160NaaCaaT44AY.880.003537
ORF1ab/nsp1160N160NaaCaaT44AY.950.003044
ORF1ab/nsp1160N160NaaCaaT44B.1.1.2070.004728
ORF1ab/nsp1160N160NaaCaaT44B.1.1.2220.000816
ORF1ab/nsp1160N160delAAC---44B.1.1.330.001684
ORF1ab/nsp1160N160delAAC---44B.1.1.3480.003185
ORF1ab/nsp1160N160NaaCaaT44B.1.177.860.000734
ORF1ab/nsp1160N160HAacCac44B.1.20.000035
ORF1ab/nsp1160N160KaaCaaA44B.1.2210.000284
ORF1ab/nsp1160N160NaaCaaT44B.1.4160.005076
ORF1ab/nsp1160N160NaaCaaT44B.1.5090.003463
ORF1ab/nsp1160N160DAacGac34B.1.617.20.000011
ORF1ab/nsp1160N160DAaCGaT14B.1.617.20.000004
ORF1ab/nsp1160N160NaaCaaT44C.180.010363
ORF1ab/nsp1160N160NaaCaaT44C.350.003096
ORF1ab/nsp1160N160KaaCaaA44P.10.000063
ORF1ab/nsp1160N160SaAcaGc44P.10.000063
ORF1ab/nsp1160N160NaaCaaT44P.1.60.007782
ORF1ab/nsp1160N160NaaCaaT44P.20.000747
ORF1ab/nsp1160N160NaaCaaT33AD.20.000657
ORF1ab/nsp1160N160KaaCaaA33AY.1030.000019
ORF1ab/nsp1160N160NaaCaaT33AY.1130.000427
ORF1ab/nsp1160N160NaaCaaT33AY.160.001139
ORF1ab/nsp1160N160NaaCaaT33AY.210.005693
ORF1ab/nsp1160N160SaAcaGc33AY.30.00003
ORF1ab/nsp1160N160NaaCaaT33AY.380.001498
ORF1ab/nsp1160N160TaAcaCc33AY.40.000005
ORF1ab/nsp1160N160KaaCaaA23AY.4.20.000043
ORF1ab/nsp1160N160KaaCaaG13AY.4.20.000022
ORF1ab/nsp1160N160NaaCaaT33AY.400.002893
ORF1ab/nsp1160N160KaaCaaA33AY.430.000013
ORF1ab/nsp1160N160TaAcaCc33AY.440.000018
ORF1ab/nsp1160N160KaaCaaA33AY.440.000018
ORF1ab/nsp1160N160NaaCaaT33AY.490.009585
ORF1ab/nsp1160N160DAacGac33AY.50.000062
ORF1ab/nsp1160N160NaaCaaT33AY.520.002443
ORF1ab/nsp1160N160NaaCaaT33AY.620.001307
ORF1ab/nsp1160N160NaaCaaT33AY.650.001599
ORF1ab/nsp1160N160NaaCaaT33AY.670.001393
ORF1ab/nsp1160N160NaaCaaT33AY.710.001425
ORF1ab/nsp1160N160NaaCaaT33AY.9.10.000251
ORF1ab/nsp1160N160NaaCaaT33AY.960.006224
ORF1ab/nsp1160N160delAAC---33B.10.000027
ORF1ab/nsp1160N160TaAcaCc33B.1.10.000054
ORF1ab/nsp1160N160NaaCaaT33B.1.1.1600.071429
ORF1ab/nsp1160N160NaaCaaT33B.1.1.2360.02069
ORF1ab/nsp1160N160NaaCaaT33B.1.1.2860.008696
ORF1ab/nsp1160N160NaaCaaT33B.1.1.3800.029412
ORF1ab/nsp1160N160TaAcaCc33B.1.1.70.000003
ORF1ab/nsp1160N160YAacTac33B.1.1.70.000003
ORF1ab/nsp1160N160NaaCaaT33B.1.160.170.005102
ORF1ab/nsp1160N160KaaCaaA33B.1.1770.00004
ORF1ab/nsp1160N160NaaCaaT33B.1.177.320.004049
ORF1ab/nsp1160N160NaaCaaT33B.1.3110.000824
ORF1ab/nsp1160N160NaaCaaT33B.1.4560.009804
ORF1ab/nsp1160N160NaaCaaT33B.1.4700.004213
ORF1ab/nsp1160N160NaaCaaT33B.1.4990.003151
ORF1ab/nsp1160N160NaaCaaT33B.1.5760.00272
ORF1ab/nsp1160N160HAacCac33B.1.617.20.000011
ORF1ab/nsp1160N160NaaCaaT33C.140.012987
ORF1ab/nsp1160N160NaaCaaT33C.360.002732
ORF1ab/nsp1160N160NaaCaaT33D.20.000225
ORF1ab/nsp1160N160NaaCaaT33Q.40.001364
ORF1ab/nsp1160N160NaaCaaT22A0.000774
ORF1ab/nsp1160N160NaaCaaT22A.2.50.000998
ORF1ab/nsp1160N160NaaCaaT22A.210.00554
ORF1ab/nsp1160N160del2aACa--22All0
ORF1ab/nsp1160N160PAACCCT12All0
ORF1ab/nsp1160N160PAAcCCc12All0
ORF1ab/nsp1160N160LAAcCTc12All0
ORF1ab/nsp1160N160FAAcTTc12All0
ORF1ab/nsp1160N160LAACCTT12All0
ORF1ab/nsp1160N160FAACTTT12All0
ORF1ab/nsp1160N160delAAC---22AY.1000.000092
ORF1ab/nsp1160N160SaAcaGc22AY.1000.000092
ORF1ab/nsp1160N160SaAcaGc22AY.1010.000981
ORF1ab/nsp1160N160NaaCaaT22AY.1090.001479
ORF1ab/nsp1160N160KaaCaaA22AY.1180.000125
ORF1ab/nsp1160N160delAAC---22AY.1190.000071
ORF1ab/nsp1160N160KaaCaaA22AY.1200.000074
ORF1ab/nsp1160N160NaaCaaT22AY.130.000322
ORF1ab/nsp1160N160NaaCaaT22AY.270.000129
ORF1ab/nsp1160N160delAAC---22AY.270.000129
ORF1ab/nsp1160N160delAAC---22AY.330.000134
ORF1ab/nsp1160N160KaaCaaA22AY.330.000134
ORF1ab/nsp1160N160delAAC---22AY.350.000466
ORF1ab/nsp1160N160NaaCaaT22AY.370.000632
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ORF1ab/nsp1160N160SaAcaGc22AY.430.000009
ORF1ab/nsp1160N160NaaCaaT22AY.480.00093
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ORF1ab/nsp1160N160NaaCaaT22AY.540.000191
ORF1ab/nsp1160N160NaaCaaT22AY.570.001312
ORF1ab/nsp1160N160NaaCaaT22AY.690.000373
ORF1ab/nsp1160N160SaAcaGc22AY.75.10.000361
ORF1ab/nsp1160N160DAacGac22AY.800.002257
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ORF1ab/nsp1160N160FAACTTT12B.1.617.20.000004
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ORF1ab/nsp1160N160NaaCaaT22B.1.617.30.00597
ORF1ab/nsp1160N160NaaCaaT22B.1.6230.001073
ORF1ab/nsp1160N160delAAC---22N.40.008511
ORF1ab/nsp1160N160delAAC---22N.60.014184
ORF1ab/nsp1160N160NaaCaaT22P.1.130.001797
ORF1ab/nsp1160N160NaaCaaT22P.1.150.000465
ORF1ab/nsp1160N160NaaCaaT22P.1.17.10.00175
ORF1ab/nsp1160N160NaaCaaT22P.1.70.000639
ORF1ab/nsp1160N160delAAC---22P.20.000373
ORF1ab/nsp1160N160NaaCaaT22Q.30.00029
ORF1ab/nsp1160N160SaAcaGc22Q.80.00033
ORF1ab/nsp1160N160NaaCaaT110.055556
ORF1ab/nsp1160N160NaaCaaT11A.110.058824
ORF1ab/nsp1160N160NaaCaaT11AE.80.000489
ORF1ab/nsp1160N160del1aaCaa-11All0
ORF1ab/nsp1160N160NaaCaaT11AW.10.003049
ORF1ab/nsp1160N160NaaCaaT11AY.100.00053
ORF1ab/nsp1160N160NaaCaaT11AY.1010.00049
ORF1ab/nsp1160N160YAacTac11AY.1020.000027
ORF1ab/nsp1160N160DAacGac11AY.1030.000006
ORF1ab/nsp1160N160delAAC---11AY.1050.000643
ORF1ab/nsp1160N160NaaCaaT11AY.1070.000466
ORF1ab/nsp1160N160delAAC---11AY.1160.000287
ORF1ab/nsp1160N160NaaCaaT11AY.116.10.000311
ORF1ab/nsp1160N160KaaCaaA11AY.1170.000085
ORF1ab/nsp1160N160SaAcaGc11AY.1190.000035
ORF1ab/nsp1160N160delAAC---11AY.120.000316
ORF1ab/nsp1160N160KaaCaaA11AY.120.10.000321
ORF1ab/nsp1160N160NaaCaaT11AY.120.20.001285
ORF1ab/nsp1160N160KaaCaaG11AY.1210.000135
ORF1ab/nsp1160N160DAacGac11AY.200.000039
ORF1ab/nsp1160N160NaaCaaT11AY.23.10.000417
ORF1ab/nsp1160N160DAacGac11AY.250.000006
ORF1ab/nsp1160N160KaaCaaA11AY.260.000028
ORF1ab/nsp1160N160delAAC---11AY.260.000028
ORF1ab/nsp1160N160SaAcaGc11AY.270.000065
ORF1ab/nsp1160N160NaaCaaT11AY.280.00189
ORF1ab/nsp1160N160delAAC---11AY.30.00001
ORF1ab/nsp1160N160DAacGac11AY.30.00001
ORF1ab/nsp1160N160NaaCaaT11AY.350.000233
ORF1ab/nsp1160N160delAAC---11AY.380.000499
ORF1ab/nsp1160N160DAacGac11AY.40.000002
ORF1ab/nsp1160N160NaaCaaT11AY.4.10.000737
ORF1ab/nsp1160N160delAAC---11AY.4.20.000022
ORF1ab/nsp1160N160delAAC---11AY.4.50.000107
ORF1ab/nsp1160N160del2aACa--11AY.440.000006
ORF1ab/nsp1160N160delAAC---11AY.460.000104
ORF1ab/nsp1160N160NaaCaaT11AY.46.30.000934
ORF1ab/nsp1160N160HAacCac11AY.50.000021
ORF1ab/nsp1160N160TaAcaCc11AY.50.000021
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ORF1ab/nsp1160N160DAacGac11AY.610.000105
ORF1ab/nsp1160N160SaAcaGc11AY.650.000533
ORF1ab/nsp1160N160NaaCaaT11AY.660.00107
ORF1ab/nsp1160N160NaaCaaT11AY.70.000196
ORF1ab/nsp1160N160delAAC---11AY.70.000196
ORF1ab/nsp1160N160NaaCaaT11AY.700.000209
ORF1ab/nsp1160N160delAAC---11AY.750.000056
ORF1ab/nsp1160N160delAAC---11AY.75.10.00018
ORF1ab/nsp1160N160NaaCaaT11AY.790.001211
ORF1ab/nsp1160N160NaaCaaT11AY.80.000606
ORF1ab/nsp1160N160NaaCaaT11AY.810.001992
ORF1ab/nsp1160N160NaaCaaT11AY.830.001724
ORF1ab/nsp1160N160delAAC---11AY.850.000427
ORF1ab/nsp1160N160SaAcaGc11AY.90.000068
ORF1ab/nsp1160N160DAacGac11AY.90.000068
ORF1ab/nsp1160N160delAAC---11AY.9.10.000084
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ORF1ab/nsp1160N160NaaCaaT11AY.940.000443
ORF1ab/nsp1160N160delAAC---11AY.950.000761
ORF1ab/nsp1160N160NaaCaaT11AY.99.10.001553
ORF1ab/nsp1160N160SaAcaGc11AY.99.20.000092
ORF1ab/nsp1160N160NaaCaaT11AZ.20.000821
ORF1ab/nsp1160N160SaAcaGc11B0.000128
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ORF1ab/nsp1160N160NaaCaaT11B.1.1.1610.003534
ORF1ab/nsp1160N160NaaCaaT11B.1.1.1700.001247
ORF1ab/nsp1160N160NaaCaaT11B.1.1.1740.003378
ORF1ab/nsp1160N160NaaCaaT11B.1.1.1890.001513
ORF1ab/nsp1160N160NaaCaaT11B.1.1.2100.005714
ORF1ab/nsp1160N160NaaCaaT11B.1.1.2210.010101
ORF1ab/nsp1160N160SaAcaGc11B.1.1.2220.000204
ORF1ab/nsp1160N160NaaCaaT11B.1.1.2410.00207
ORF1ab/nsp1160N160NaaCaaT11B.1.1.250.000569
ORF1ab/nsp1160N160NaaCaaT11B.1.1.2940.001266
ORF1ab/nsp1160N160NaaCaaT11B.1.1.3060.000438
ORF1ab/nsp1160N160NaaCaaT11B.1.1.3180.000302
ORF1ab/nsp1160N160NaaCaaT11B.1.1.330.000421
ORF1ab/nsp1160N160NaaCaaT11B.1.1.3690.000446
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ORF1ab/nsp1160N160NaaCaaT11B.1.1.4320.001266
ORF1ab/nsp1160N160KaaCaaA11B.1.1.4320.001266
ORF1ab/nsp1160N160DAacGac11B.1.1.4330.001425
ORF1ab/nsp1160N160NaaCaaT11B.1.1.4350.034483
ORF1ab/nsp1160N160NaaCaaT11B.1.1.4380.05
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ORF1ab/nsp1160N160NaaCaaT11B.1.1.4640.001473
ORF1ab/nsp1160N160SaAcaGc11B.1.1.630.000386
ORF1ab/nsp1160N160del1aaCaa-11B.1.1.70.000001
ORF1ab/nsp1160N160NaaCaaT11B.1.1.700.000341
ORF1ab/nsp1160N160NaaCaaT11B.1.1.750.010638
ORF1ab/nsp1160N160NaaCaaT11B.1.1.950.019608
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ORF1ab/nsp1160N160DAacGac11B.1.1770.000013
ORF1ab/nsp1160N160delAAC---11B.1.1770.000013
ORF1ab/nsp1160N160IaAcaTc11B.1.1770.000013
ORF1ab/nsp1160N160NaaCaaT11B.1.177.100.000878
ORF1ab/nsp1160N160DAacGac11B.1.177.230.003236
ORF1ab/nsp1160N160KaaCaaA11B.1.177.330.001645
ORF1ab/nsp1160N160NaaCaaT11B.1.177.40.000211
ORF1ab/nsp1160N160TaAcaCc11B.1.177.60.000977
ORF1ab/nsp1160N160NaaCaaT11B.1.177.620.001192
ORF1ab/nsp1160N160NaaCaaT11B.1.177.70.000165
ORF1ab/nsp1160N160DAacGac11B.1.177.710.010101
ORF1ab/nsp1160N160NaaCaaT11B.1.2100.002132
ORF1ab/nsp1160N160delAAC---11B.1.2320.000537
ORF1ab/nsp1160N160delAAC---11B.1.2580.000067
ORF1ab/nsp1160N160NaaCaaT11B.1.258.70.001912
ORF1ab/nsp1160N160NaaCaaT11B.1.351.30.000876
ORF1ab/nsp1160N160NaaCaaT11B.1.3590.022727
ORF1ab/nsp1160N160SaAcaGc11B.1.360.000146
ORF1ab/nsp1160N160delAAC---11B.1.360.000146
ORF1ab/nsp1160N160NaaCaaT11B.1.36.170.000494
ORF1ab/nsp1160N160NaaCaaT11B.1.36.180.00042
ORF1ab/nsp1160N160NaaCaaT11B.1.3610.001289
ORF1ab/nsp1160N160NaaCaaT11B.1.3620.001541
ORF1ab/nsp1160N160NaaCaaT11B.1.3670.000792
ORF1ab/nsp1160N160NaaCaaT11B.1.3690.000285
ORF1ab/nsp1160N160NaaCaaT11B.1.3750.00082
ORF1ab/nsp1160N160NaaCaaT11B.1.4000.000429
ORF1ab/nsp1160N160NaaCaaT11B.1.4030.003268
ORF1ab/nsp1160N160NaaCaaT11B.1.4110.003704
ORF1ab/nsp1160N160NaaCaaT11B.1.4230.010204
ORF1ab/nsp1160N160delAAC---11B.1.4270.00005
ORF1ab/nsp1160N160KaaCaaA11B.1.4270.00005
ORF1ab/nsp1160N160delAAC---11B.1.4290.000024
ORF1ab/nsp1160N160NaaCaaT11B.1.4590.004082
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ORF1ab/nsp1160N160DAacGac11B.1.5250.000113
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ORF1ab/nsp1160N160NaaCaaT11B.1.5270.003704
ORF1ab/nsp1160N160NaaCaaT11B.1.5420.03125
ORF1ab/nsp1160N160NaaCaaT11B.1.5440.006024
ORF1ab/nsp1160N160NaaCaaT11B.1.5510.00129
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ORF1ab/nsp1160N160NaaCaaT11B.1.5770.000687
ORF1ab/nsp1160N160NaaCaaT11B.1.5800.004065
ORF1ab/nsp1160N160NaaCaaT11B.1.5880.00091
ORF1ab/nsp1160N160SaAcaGc11B.1.5900.004545
ORF1ab/nsp1160N160KaaCaaA11B.1.5960.000087
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ORF1ab/nsp1160N160NaaCaaT11B.1.621.10.000506
ORF1ab/nsp1160N160delAAC---11B.1.6380.052632
ORF1ab/nsp1160N160NaaCaaT11B.1.88.10.004808
ORF1ab/nsp1160N160NaaCaaT11B.260.014706
ORF1ab/nsp1160N160SaAcaGc11B.290.003509
ORF1ab/nsp1160N160KaaCaaA11B.30.000831
ORF1ab/nsp1160N160NaaCaaT11B.300.014706
ORF1ab/nsp1160N160NaaCaaT11C.160.00106
ORF1ab/nsp1160N160delAAC---11C.350.000774
ORF1ab/nsp1160N160NaaCaaT11C.80.004464
ORF1ab/nsp1160N160delAAC---11D.20.000075
ORF1ab/nsp1160N160IaAcaTc11D.20.000075
ORF1ab/nsp1160N160NaaCaaT11L.30.003546
ORF1ab/nsp1160N160NaaCaaT11N.30.005814
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ORF1ab/nsp1160N160NaaCaaT11P.1.160.000374
ORF1ab/nsp1160N160DAacGac11P.1.70.000319
ORF1ab/nsp1160N160NaaCaaT11P.70.004367
ORF1ab/nsp1160N160del2aACa--11U.30.003861
ORF1ab/nsp1160N160NaaCaaT11V.10.022727
ORF1ab/nsp1160N160NaaCaaT11W.30.005263