CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 16 | L16L | L16L | syn | ctC | ctT | 51153 | 51115 | 0.999257 | 311-313 |
ORF1ab/nsp1 | 16 | L16L | L16L | syn | ctC | ctA | 51153 | 28 | 0.000547377 | 311-313 |
ORF1ab/nsp1 | 16 | L16L | L16L | syn | ctC | ctG | 51153 | 9 | 0.000175943 | 311-313 |
ORF1ab/nsp1 | 16 | L16L | L16L | syn | CtC | TtG | 51153 | 1 | 0.0000195492 | 311-313 |
ORF1ab/nsp1 | 16 | L16F | L16F | nonsyn | Ctc | Ttc | 991 | 981 | 0.989909 | 311-313 |
ORF1ab/nsp1 | 16 | L16F | L16F | nonsyn | CtC | TtT | 991 | 10 | 0.0100908 | 311-313 |
ORF1ab/nsp1 | 16 | L16del | L16del | del | CTC | --- | 179 | 179 | 1 | 311-313 |
ORF1ab/nsp1 | 16 | L16P | L16P | nonsyn | cTc | cCc | 61 | 60 | 0.983607 | 311-313 |
ORF1ab/nsp1 | 16 | L16P | L16P | nonsyn | cTC | cCG | 61 | 1 | 0.0163934 | 311-313 |
ORF1ab/nsp1 | 16 | L16I | L16I | nonsyn | Ctc | Atc | 42 | 42 | 1 | 311-313 |
ORF1ab/nsp1 | 16 | L16R | L16R | nonsyn | cTc | cGc | 29 | 28 | 0.965517 | 311-313 |
ORF1ab/nsp1 | 16 | L16R | L16R | nonsyn | cTC | cGT | 29 | 1 | 0.0344828 | 311-313 |
ORF1ab/nsp1 | 16 | L16H | L16H | nonsyn | cTc | cAc | 27 | 27 | 1 | 311-313 |
ORF1ab/nsp1 | 16 | L16del1 | L16del1 | del | ctC | ct- | 18 | 16 | 0.888889 | 311-313 |
ORF1ab/nsp1 | 16 | L16del1 | L16del1 | del | cTc | c-c | 18 | 1 | 0.0555556 | 311-313 |
ORF1ab/nsp1 | 16 | L16del1 | L16del1 | del | cTC | cC- | 18 | 1 | 0.0555556 | 311-313 |
ORF1ab/nsp1 | 16 | L16V | L16V | nonsyn | Ctc | Gtc | 13 | 13 | 1 | 311-313 |
ORF1ab/nsp1 | 16 | L16del2 | L16del2 | del | CTc | --c | 13 | 8 | 0.615385 | 311-313 |
ORF1ab/nsp1 | 16 | L16del2 | L16del2 | del | cTC | c-- | 13 | 5 | 0.384615 | 311-313 |
ORF1ab/nsp1 | 16 | L16S | L16S | nonsyn | CTc | TCc | 10 | 7 | 0.7 | 311-313 |
ORF1ab/nsp1 | 16 | L16S | L16S | nonsyn | CTC | TCA | 10 | 2 | 0.2 | 311-313 |
ORF1ab/nsp1 | 16 | L16S | L16S | nonsyn | CTC | TCG | 10 | 1 | 0.1 | 311-313 |
ORF1ab/nsp1 | 16 | L16T | L16T | nonsyn | CTc | ACc | 2 | 2 | 1 | 311-313 |
ORF1ab/nsp1 | 16 | L16Y | L16Y | nonsyn | CTc | TAc | 1 | 1 | 1 | 311-313 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 51115 | 51153 | All | 0.009776 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 28 | 51153 | All | 0.000005 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctG | 9 | 51153 | All | 0.000002 |
ORF1ab/nsp1 | 16 | L16L | CtC | TtG | 1 | 51153 | All | 0 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 18025 | 18025 | B.1.1.214 | 0.999612 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 9308 | 9308 | B.1.1.284 | 0.999678 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 6277 | 6278 | B.1.1 | 0.113871 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 6278 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2181 | 2181 | B.1.1.306 | 0.95616 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2038 | 2038 | AE.8 | 0.996577 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1422 | 1422 | B.1.1.50 | 0.965377 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1250 | 1255 | B.1.1.7 | 0.001119 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 4 | 1255 | B.1.1.7 | 0.000004 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctG | 1 | 1255 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 981 | 991 | All | 0.000188 |
ORF1ab/nsp1 | 16 | L16F | CtC | TtT | 10 | 991 | All | 0.000002 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 765 | 765 | AY.4 | 0.001191 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 685 | 685 | B.1.1.433 | 0.975783 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 528 | 528 | B.1.1.51 | 0.907216 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 484 | 485 | AY.44 | 0.002946 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctG | 1 | 485 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 460 | 462 | B.1 | 0.004213 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 2 | 462 | B.1 | 0.000018 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 351 | 351 | B.1.1.303 | 0.969613 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 344 | 344 | B.1.1.48 | 0.988506 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 316 | 316 | AY.103 | 0.001962 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 269 | 269 | AY.43 | 0.001192 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 266 | 268 | B.1.617.2 | 0.001002 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 268 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctG | 1 | 268 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 230 | 230 | B.1.1.305 | 0.888031 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 220 | 220 | B.1.1.181 | 1 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 215 | 216 | AY.25 | 0.001293 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 216 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 214 | 214 | B.1.1.429 | 0.986175 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 200 | 200 | AY.119 | 0.007062 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 190 | 190 | B.1.1.272 | 0.989583 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 185 | 185 | AV.1 | 0.934343 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 182 | 182 | B.1.1.7 | 0.000163 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 181 | 181 | B.1.1.47 | 0.967914 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 179 | 179 | All | 0.000034 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 170 | 170 | B.1.1.226 | 0.988372 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 167 | 167 | B.1.1.210 | 0.954286 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 152 | 152 | B.1.1.285 | 0.993464 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 144 | 144 | B.1.160.14 | 0.305085 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 136 | 136 | B.1.1.113 | 0.951049 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 125 | 125 | B.1.1.236 | 0.862069 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 123 | 123 | B.1.538 | 0.991935 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 110 | 110 | B.1.1.209 | 0.982143 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 105 | 108 | B.1.2 | 0.000925 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 2 | 108 | B.1.2 | 0.000018 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctG | 1 | 108 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 104 | 104 | B.1.1.428 | 0.981132 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 93 | 93 | P.1 | 0.001465 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 85 | 86 | B.1.526 | 0.001998 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 86 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 85 | 85 | B.1.1.282 | 0.988372 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 81 | 81 | AY.39 | 0.002002 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 76 | 76 | AE.1 | 0.863636 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 74 | 74 | B.1.258 | 0.004924 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 72 | 72 | B.1.36.18 | 0.030252 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 70 | 70 | AY.20 | 0.002721 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 62 | 62 | B.1.1.431 | 1 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 60 | 61 | All | 0.000011 |
ORF1ab/nsp1 | 16 | L16P | cTC | cCG | 1 | 61 | All | 0 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 59 | 59 | B.1.617.2 | 0.000222 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 56 | 56 | B.1.1.49 | 0.982456 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 55 | 55 | AY.47 | 0.001711 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 49 | 51 | AY.4 | 0.000076 |
ORF1ab/nsp1 | 16 | L16F | CtC | TtT | 2 | 51 | AY.4 | 0.000003 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 50 | 50 | AY.4.2 | 0.001084 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 50 | 50 | B.1.160 | 0.001559 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 49 | 49 | AY.3 | 0.000487 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 48 | 49 | B.1.240 | 0.010347 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 49 | B.1.240 | 0.000216 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 47 | 47 | AE.5 | 0.87037 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 47 | 47 | B.1.1.7 | 0.000042 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 45 | 45 | B.1.1.213 | 0.978261 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 45 | 45 | B.1.177.44 | 0.023352 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 43 | 43 | AY.75 | 0.002409 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 43 | 43 | B.1.1.283 | 1 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 43 | 43 | B.1.1.482 | 1 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 42 | 42 | All | 0.000008 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 42 | 42 | B.1.1.139 | 0.954545 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 36 | 37 | B.1.177 | 0.000474 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctG | 1 | 37 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 31 | 31 | AP.1 | 0.046547 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 31 | 31 | B.1.1.162 | 0.911765 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 30 | 30 | B.1.1.160 | 0.714286 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 30 | 30 | B.1.1.378 | 0.218978 |
ORF1ab/nsp1 | 16 | L16R | cTc | cGc | 28 | 29 | All | 0.000005 |
ORF1ab/nsp1 | 16 | L16R | cTC | cGT | 1 | 29 | All | 0 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 29 | 29 | AY.102 | 0.000769 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 28 | 28 | AY.4.2 | 0.000607 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 28 | 28 | B.1.1.72 | 0.848485 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 27 | 27 | AF.1 | 1 |
ORF1ab/nsp1 | 16 | L16H | cTc | cAc | 27 | 27 | All | 0.000005 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 27 | 27 | AY.25 | 0.000162 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 26 | 27 | AY.33 | 0.001736 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 27 | AY.33 | 0.000067 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 27 | 27 | AY.9.2 | 0.000992 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 27 | 27 | B.1.351 | 0.000803 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 27 | 27 | C.37 | 0.003134 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 26 | 26 | AE.3 | 0.83871 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 26 | 26 | AE.6 | 1 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 26 | 26 | AY.46.5 | 0.005159 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 26 | 26 | B.1.36 | 0.003793 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 24 | 24 | C.28 | 0.96 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 23 | 23 | AE.4 | 1 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 22 | 23 | AY.26 | 0.000623 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctG | 1 | 23 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 23 | 23 | AY.43 | 0.000102 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 23 | 23 | B.1.2 | 0.000203 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 22 | 22 | B.1.1.286 | 0.063768 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 22 | 22 | B.1.548 | 0.785714 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 21 | 21 | B.1.1.337 | 0.07554 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 21 | 21 | B.1.177.21 | 0.001606 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 21 | 21 | P.1 | 0.000331 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 20 | 20 | B.1.1.170 | 0.024938 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 20 | 20 | B.1.1.425 | 0.909091 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 20 | 20 | B.1.1.430 | 0.833333 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 18 | 20 | B.1.1.519 | 0.000715 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctG | 1 | 20 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 16 | L16L | CtC | TtG | 1 | 20 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 20 | 20 | B.1.177.15 | 0.012618 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 20 | 20 | B.1.221 | 0.001421 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 20 | 20 | B.1.243 | 0.001392 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 19 | 20 | B.1.429 | 0.000447 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 20 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 19 | 19 | AY.87 | 0.01582 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 19 | 19 | P.2 | 0.003546 |
ORF1ab/nsp1 | 16 | L16del1 | ctC | ct- | 16 | 18 | All | 0.000003 |
ORF1ab/nsp1 | 16 | L16del1 | cTc | c-c | 1 | 18 | All | 0 |
ORF1ab/nsp1 | 16 | L16del1 | cTC | cC- | 1 | 18 | All | 0 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 18 | 18 | AY.44 | 0.00011 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 18 | 18 | B | 0.002301 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 18 | 18 | B.1.177.81 | 0.003408 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 18 | 18 | P.1.1 | 0.005718 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 18 | 18 | P.1.14 | 0.00086 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 17 | 17 | AE.2 | 1 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 17 | 17 | B.1.427 | 0.000858 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 16 | 16 | AY.106 | 0.005358 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 16 | 16 | B.1.609 | 0.00767 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 16 | 16 | P.1.7 | 0.005109 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 15 | 15 | AY.93 | 0.004096 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 15 | 15 | B.1.1.114 | 1 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 15 | 15 | B.1.1.207 | 0.01773 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 15 | 15 | P.1.17 | 0.002426 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 14 | 14 | AY.45 | 0.001704 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 13 | 14 | AY.5 | 0.000268 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 14 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 14 | 14 | AY.61 | 0.001467 |
ORF1ab/nsp1 | 16 | L16V | Ctc | Gtc | 13 | 13 | All | 0.000002 |
ORF1ab/nsp1 | 16 | L16del2 | CTc | --c | 8 | 13 | All | 0.000002 |
ORF1ab/nsp1 | 16 | L16del2 | cTC | c-- | 5 | 13 | All | 0.000001 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 13 | 13 | AY.16 | 0.004935 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 13 | 13 | AY.99.2 | 0.001198 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 13 | 13 | B.1.1.174 | 0.043919 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 13 | 13 | B.1.165 | 0.154762 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 13 | 13 | B.1.177.15 | 0.008202 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 13 | 13 | B.1.396 | 0.009174 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 12 | 12 | AE.7 | 1 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 12 | 12 | AY.119 | 0.000424 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 12 | 12 | AY.69 | 0.00224 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 12 | 12 | B.1.1.368 | 0.037037 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 12 | 12 | B.1.1.39 | 0.006116 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 12 | 12 | B.1.596 | 0.001046 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 11 | 11 | AY.100 | 0.000506 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 11 | 11 | AY.11 | 0.014726 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 11 | 11 | AY.120 | 0.000409 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 11 | 11 | AY.46 | 0.001145 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 11 | 11 | AY.62 | 0.004793 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 11 | 11 | B.1.1.56 | 0.196429 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 11 | 11 | B.1.177 | 0.000145 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 11 | 11 | B.1.223 | 0.030556 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 11 | 11 | B.1.471 | 0.030055 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 11 | 11 | B.1.617.1 | 0.001419 |
ORF1ab/nsp1 | 16 | L16S | CTc | TCc | 7 | 10 | All | 0.000001 |
ORF1ab/nsp1 | 16 | L16S | CTC | TCA | 2 | 10 | All | 0 |
ORF1ab/nsp1 | 16 | L16S | CTC | TCG | 1 | 10 | All | 0 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 8 | 10 | B.1.1 | 0.000145 |
ORF1ab/nsp1 | 16 | L16F | CtC | TtT | 2 | 10 | B.1.1 | 0.000036 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 10 | 10 | B.1.1.350 | 0.4 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 10 | 10 | B.1.1.45 | 0.140845 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 10 | 10 | D.2 | 0.00075 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 9 | 9 | A.27 | 0.014901 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 9 | 9 | AY.100 | 0.000414 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 8 | 9 | AY.118 | 0.000501 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 9 | AY.118 | 0.000063 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 8 | 9 | AY.23 | 0.000558 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctG | 1 | 9 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 9 | 9 | AY.3.1 | 0.000767 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 9 | 9 | B.1.1.135 | 0.042254 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 8 | 9 | B.1.1.232 | 0.014519 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 9 | B.1.1.232 | 0.001815 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 9 | 9 | B.1.1.291 | 0.006682 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 9 | 9 | B.1.1.340 | 0.409091 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 9 | 9 | B.1.258.17 | 0.000936 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 9 | 9 | B.1.575 | 0.002731 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 9 | 9 | B.1.632 | 0.060403 |
ORF1ab/nsp1 | 16 | L16R | cTc | cGc | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 9 | 9 | P.1.15 | 0.002091 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 8 | 8 | AY.39.1 | 0.000317 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 8 | 8 | B.1.1.317 | 0.003294 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 8 | 8 | B.1.1.356 | 0.068376 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 8 | 8 | B.1.234 | 0.001056 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 8 | 8 | R.1 | 0.00072 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 7 | 7 | AY.113 | 0.000997 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 7 | 7 | AY.59 | 0.003708 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 7 | 7 | AY.9 | 0.000473 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 7 | 7 | AY.98.1 | 0.000339 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 7 | 7 | B.1.1.117 | 0.067961 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 7 | 7 | B.1.1.269 | 0.009472 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 7 | 7 | B.1.1.28 | 0.002179 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 7 | 7 | B.1.1.369 | 0.003124 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 7 | 7 | B.1.1.37 | 0.00135 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 7 | 7 | B.1.1.419 | 0.051852 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 7 | 7 | B.1.1.44 | 0.016867 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 7 | 7 | B.1.1.67 | 0.031963 |
ORF1ab/nsp1 | 16 | L16R | cTc | cGc | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp1 | 16 | L16del2 | CTc | --c | 5 | 7 | B.1.1.7 | 0.000004 |
ORF1ab/nsp1 | 16 | L16del2 | cTC | c-- | 2 | 7 | B.1.1.7 | 0.000002 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 7 | 7 | B.1.1.89 | 0.042424 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 7 | 7 | B.1.36.27 | 0.005344 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 7 | 7 | B.1.517 | 0.002989 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 7 | 7 | Q.4 | 0.003183 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 5 | 6 | A | 0.001935 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 6 | A | 0.000387 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 6 | 6 | AY.27 | 0.000388 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 6 | 6 | AY.35 | 0.001398 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp1 | 16 | L16H | cTc | cAc | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 6 | 6 | B.1.1.171 | 0.022059 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 6 | 6 | B.1.1.416 | 0.00543 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 6 | 6 | B.1.1.442 | 0.111111 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 6 | 6 | B.1.239 | 0.007326 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 6 | 6 | B.1.400 | 0.002574 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 6 | 6 | B.1.438.1 | 0.000644 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 5 | AY.42 | 0.000121 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctG | 1 | 5 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 5 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 5 | 5 | AY.91 | 0.003652 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 5 | 5 | B.1.1.176 | 0.002197 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 5 | 5 | B.1.1.309 | 0.02924 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 5 | 5 | B.1.1.372 | 0.003444 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 5 | 5 | B.1.1.464 | 0.007364 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 5 | 5 | B.1.1.523 | 0.007812 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 5 | 5 | B.1.177.10 | 0.00439 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 5 | 5 | B.1.177.4 | 0.001055 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 5 | 5 | B.1.177.7 | 0.000824 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 5 | 5 | N.5 | 0.008834 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | A.2.4 | 0.013468 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 3 | 4 | AY.23 | 0.000209 |
ORF1ab/nsp1 | 16 | L16F | CtC | TtT | 1 | 4 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 4 | 4 | AY.34.1 | 0.00204 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | AY.46.3 | 0.003735 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | AY.85 | 0.001709 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | B.1.1.189 | 0.006051 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | B.1.1.253 | 0.010025 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | B.1.1.294 | 0.005063 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | B.1.1.301 | 0.004717 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | B.1.1.57 | 0.045977 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | B.1.1.61 | 0.035088 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | B.1.1.63 | 0.001543 |
ORF1ab/nsp1 | 16 | L16H | cTc | cAc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | B.1.161 | 0.068966 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 4 | 4 | B.1.177.57 | 0.001124 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | B.1.241 | 0.003247 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | B.1.247 | 0.059701 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | B.1.562 | 0.074074 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | B.1.588 | 0.00364 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | B.1.627 | 0.008081 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp1 | 16 | L16V | Ctc | Gtc | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp1 | 16 | L16H | cTc | cAc | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | AY.58 | 0.002722 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 3 | AY.7.1 | 0.000225 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 3 | AY.7.1 | 0.000113 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | B.1.1.101 | 0.03 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | B.1.1.237 | 0.016216 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | B.1.1.316 | 0.002775 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | B.1.1.344 | 0.032258 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp1 | 16 | L16V | Ctc | Gtc | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | B.1.1.462 | 0.025862 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | B.1.1.486 | 0.004732 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | B.1.1.522 | 0.051724 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | B.1.1.95 | 0.058824 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | B.1.177.56 | 0.002003 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | B.1.236 | 0.00616 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 2 | 3 | B.1.617.1 | 0.000258 |
ORF1ab/nsp1 | 16 | L16F | CtC | TtT | 1 | 3 | B.1.617.1 | 0.000129 |
ORF1ab/nsp1 | 16 | L16del1 | ctC | ct- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 3 | B.6 | 0.00182 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 3 | B.6 | 0.00091 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 3 | 3 | N.6 | 0.021277 |
ORF1ab/nsp1 | 16 | L16T | CTc | ACc | 2 | 2 | All | 0 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp1 | 16 | L16R | cTc | cGc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp1 | 16 | L16del1 | ctC | ct- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp1 | 16 | L16H | cTc | cAc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.1.134 | 0.022727 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.1.137 | 0.025 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.1.198 | 0.002937 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.1.200 | 0.014925 |
ORF1ab/nsp1 | 16 | L16F | CtC | TtT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.1.221 | 0.020202 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.1.254 | 0.022472 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp1 | 16 | L16R | cTc | cGc | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp1 | 16 | L16P | cTC | cCG | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 16 | L16S | CTC | TCG | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 16 | L16S | CTc | TCc | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.1.524 | 0.041667 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.1.54 | 0.006042 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.1.55 | 0.025974 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.160.28 | 0.005848 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 2 | 2 | B.1.177.2 | 0.009091 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.177.33 | 0.003289 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp1 | 16 | L16del1 | ctC | ct- | 2 | 2 | B.1.247 | 0.029851 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.3 | 0.005236 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.305 | 0.004301 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp1 | 16 | L16F | CtC | TtT | 1 | 2 | B.1.36.18 | 0.00042 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 2 | B.1.36.18 | 0.00042 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.388 | 0.181818 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.389 | 0.002004 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.395 | 0.014085 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.404 | 0.002604 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.416.1 | 0.003125 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp1 | 16 | L16H | cTc | cAc | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.564.1 | 0.003155 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.569 | 0.028986 |
ORF1ab/nsp1 | 16 | L16del1 | ctC | ct- | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 16 | L16H | cTc | cAc | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 2 | B.1.623 | 0.000536 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 2 | B.1.623 | 0.000536 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 2 | 2 | B.1.630 | 0.010471 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 2 | 2 | L.3 | 0.007092 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | A.29 | 0.005319 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AA.1 | 0.007246 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp1 | 16 | L16Y | CTc | TAc | 1 | 1 | All | 0 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp1 | 16 | L16T | CTc | ACc | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 16 | L16H | cTc | cAc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp1 | 16 | L16H | cTc | cAc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp1 | 16 | L16del1 | ctC | ct- | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp1 | 16 | L16S | CTc | TCc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 16 | L16V | Ctc | Gtc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 16 | L16R | cTc | cGc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp1 | 16 | L16R | cTc | cGc | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 16 | L16R | cTc | cGc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 16 | L16V | Ctc | Gtc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp1 | 16 | L16del2 | cTC | c-- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 16 | L16R | cTc | cGc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 16 | L16S | CTc | TCc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 16 | L16del1 | cTC | cC- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 16 | L16H | cTc | cAc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 16 | L16del1 | ctC | ct- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 16 | L16V | Ctc | Gtc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 16 | L16R | cTc | cGc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp1 | 16 | L16R | cTc | cGc | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp1 | 16 | L16del2 | cTC | c-- | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp1 | 16 | L16del1 | cTc | c-c | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp1 | 16 | L16H | cTc | cAc | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp1 | 16 | L16H | cTc | cAc | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp1 | 16 | L16del2 | CTc | --c | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 16 | L16R | cTC | cGT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 16 | L16H | cTc | cAc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 16 | L16S | CTC | TCA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 16 | L16del1 | ctC | ct- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp1 | 16 | L16del1 | ctC | ct- | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.197 | 0.037037 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.26 | 0.005236 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.266 | 0.012195 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp1 | 16 | L16F | CtC | TtT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp1 | 16 | L16R | cTc | cGc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.328 | 0.016949 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.364 | 0.066667 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.365 | 0.005587 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.403 | 0.025641 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.484 | 0.1 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.514 | 0.038462 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp1 | 16 | L16V | Ctc | Gtc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 16 | L16S | CTc | TCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.98 | 0.018519 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.113 | 0.015625 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.169 | 0.014925 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 16 | L16V | Ctc | Gtc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 16 | L16H | cTc | cAc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp1 | 16 | L16del2 | cTC | c-- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.258.22 | 0.002667 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 16 | L16S | CTc | TCc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 16 | L16del1 | ctC | ct- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 16 | L16I | Ctc | Atc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 16 | L16R | cTc | cGc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.362.2 | 0.004717 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp1 | 16 | L16del2 | CTc | --c | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.428.2 | 0.033333 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 16 | L16Y | CTc | TAc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.496 | 0.125 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 1 | B.1.513 | 0.013889 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.517.1 | 0.005263 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp1 | 16 | L16S | CTc | TCc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp1 | 16 | L16S | CTC | TCA | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.594 | 0.03125 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.610 | 0.003546 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp1 | 16 | L16T | CTc | ACc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp1 | 16 | L16V | Ctc | Gtc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 16 | L16S | CTc | TCc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 16 | L16del1 | ctC | ct- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp1 | 16 | L16del2 | CTc | --c | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.18 | 0.043478 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp1 | 16 | L16H | cTc | cAc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 16 | L16P | cTc | cCc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 16 | L16del1 | ctC | ct- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 16 | L16V | Ctc | Gtc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctA | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp1 | 16 | L16L | ctC | ctT | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp1 | 16 | L16F | Ctc | Ttc | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp1 | 16 | L16del | CTC | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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