CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 156 | D156D | D156D | syn | gaT | gaC | 114849 | 114849 | 1 | 731-733 |
ORF1ab/nsp1 | 156 | D156N | D156N | nonsyn | Gat | Aat | 372 | 360 | 0.967742 | 731-733 |
ORF1ab/nsp1 | 156 | D156N | D156N | nonsyn | GaT | AaC | 372 | 12 | 0.0322581 | 731-733 |
ORF1ab/nsp1 | 156 | D156G | D156G | nonsyn | gAt | gGt | 219 | 218 | 0.995434 | 731-733 |
ORF1ab/nsp1 | 156 | D156G | D156G | nonsyn | gAT | gGC | 219 | 1 | 0.00456621 | 731-733 |
ORF1ab/nsp1 | 156 | D156Y | D156Y | nonsyn | Gat | Tat | 151 | 148 | 0.980132 | 731-733 |
ORF1ab/nsp1 | 156 | D156Y | D156Y | nonsyn | GaT | TaC | 151 | 3 | 0.0198676 | 731-733 |
ORF1ab/nsp1 | 156 | D156del | D156del | del | GAT | --- | 79 | 79 | 1 | 731-733 |
ORF1ab/nsp1 | 156 | D156E | D156E | nonsyn | gaT | gaG | 55 | 47 | 0.854545 | 731-733 |
ORF1ab/nsp1 | 156 | D156E | D156E | nonsyn | gaT | gaA | 55 | 8 | 0.145455 | 731-733 |
ORF1ab/nsp1 | 156 | D156A | D156A | nonsyn | gAt | gCt | 45 | 44 | 0.977778 | 731-733 |
ORF1ab/nsp1 | 156 | D156A | D156A | nonsyn | gAT | gCC | 45 | 1 | 0.0222222 | 731-733 |
ORF1ab/nsp1 | 156 | D156V | D156V | nonsyn | gAt | gTt | 14 | 14 | 1 | 731-733 |
ORF1ab/nsp1 | 156 | D156H | D156H | nonsyn | Gat | Cat | 11 | 10 | 0.909091 | 731-733 |
ORF1ab/nsp1 | 156 | D156H | D156H | nonsyn | GaT | CaC | 11 | 1 | 0.0909091 | 731-733 |
ORF1ab/nsp1 | 156 | D156del1 | D156del1 | del | gaT | ga- | 8 | 6 | 0.75 | 731-733 |
ORF1ab/nsp1 | 156 | D156del1 | D156del1 | del | Gat | -at | 8 | 2 | 0.25 | 731-733 |
ORF1ab/nsp1 | 156 | D156R | D156R | nonsyn | GAt | CGt | 2 | 2 | 1 | 731-733 |
ORF1ab/nsp1 | 156 | D156P | D156P | nonsyn | GAt | CCt | 2 | 1 | 0.5 | 731-733 |
ORF1ab/nsp1 | 156 | D156S | D156S | nonsyn | GAt | TCt | 2 | 1 | 0.5 | 731-733 |
ORF1ab/nsp1 | 156 | D156S | D156S | nonsyn | GAT | TCC | 2 | 1 | 0.5 | 731-733 |
ORF1ab/nsp1 | 156 | D156P | D156P | nonsyn | GAT | CCC | 2 | 1 | 0.5 | 731-733 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 114849 | 114849 | All | 0.021966 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 62866 | 62866 | P.1 | 0.99039 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 20877 | 20877 | P.1.14 | 0.997945 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 6158 | 6158 | P.1.17 | 0.996118 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 4271 | 4271 | P.1.15 | 0.992333 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3698 | 3698 | P.1.10 | 0.996497 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3117 | 3117 | P.1.7 | 0.995211 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3064 | 3064 | P.1.1 | 0.973316 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2601 | 2601 | P.1.16 | 0.973064 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1944 | 1944 | P.1.12 | 0.940949 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1143 | 1143 | P.1.17.1 | 1 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1101 | 1101 | P.1.13 | 0.989218 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1023 | 1023 | P.1.4 | 0.999023 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 864 | 864 | P.1.2 | 0.998844 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 513 | 513 | P.1.6 | 0.998054 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 360 | 372 | All | 0.000069 |
ORF1ab/nsp1 | 156 | D156N | GaT | AaC | 12 | 372 | All | 0.000002 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 218 | 219 | All | 0.000042 |
ORF1ab/nsp1 | 156 | D156G | gAT | gGC | 1 | 219 | All | 0 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 209 | 209 | P.1.8 | 1 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 207 | 207 | P.1.9 | 0.995192 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 195 | 195 | AY.44 | 0.001187 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 164 | 164 | AY.4 | 0.000255 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 148 | 151 | All | 0.000028 |
ORF1ab/nsp1 | 156 | D156Y | GaT | TaC | 3 | 151 | All | 0.000001 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 126 | 126 | B.1.1.7 | 0.000113 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 114 | 114 | P.1.10.1 | 0.926829 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 104 | 104 | B.1 | 0.000953 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 98 | 98 | P.1.11 | 1 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 95 | 95 | B.1.1 | 0.001723 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 79 | 79 | All | 0.000015 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 69 | 69 | AY.4 | 0.000107 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 60 | 60 | B.1.1.7 | 0.000054 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaG | 47 | 55 | All | 0.000009 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaA | 8 | 55 | All | 0.000002 |
ORF1ab/nsp1 | 156 | D156A | gAt | gCt | 44 | 45 | All | 0.000008 |
ORF1ab/nsp1 | 156 | D156A | gAT | gCC | 1 | 45 | All | 0 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 41 | 41 | AY.103 | 0.000255 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 38 | 38 | AY.43 | 0.000168 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 35 | 35 | B.1.617.2 | 0.000132 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 34 | 34 | AY.44 | 0.000207 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 33 | 33 | C.37 | 0.00383 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 29 | 29 | P.1.3 | 1 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 24 | 24 | P.1.10.2 | 1 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 23 | 23 | AY.4.5 | 0.002472 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 22 | 22 | AY.6 | 0.000905 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 21 | 21 | B.1.596 | 0.00183 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 18 | 18 | B.1.1.28 | 0.005602 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 17 | 17 | B.1.1.7 | 0.000015 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 17 | 17 | B.1.526 | 0.0004 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp1 | 156 | D156V | gAt | gTt | 14 | 14 | All | 0.000003 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 13 | 13 | B.1.1.528 | 0.0625 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 13 | 13 | P.1.5 | 1 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 12 | 12 | AY.4.2 | 0.00026 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaG | 12 | 12 | AY.9.1 | 0.001005 |
ORF1ab/nsp1 | 156 | D156A | gAt | gCt | 12 | 12 | B.1.177.51 | 0.054795 |
ORF1ab/nsp1 | 156 | D156H | Gat | Cat | 10 | 11 | All | 0.000002 |
ORF1ab/nsp1 | 156 | D156H | GaT | CaC | 1 | 11 | All | 0 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 11 | 11 | B.1.258.17 | 0.001144 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 10 | 10 | A.2.5 | 0.00499 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 10 | 10 | B.1.1.306 | 0.004384 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaG | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp1 | 156 | D156N | GaT | AaC | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp1 | 156 | D156del1 | gaT | ga- | 6 | 8 | All | 0.000001 |
ORF1ab/nsp1 | 156 | D156del1 | Gat | -at | 2 | 8 | All | 0 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 8 | 8 | AY.72 | 0.010884 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 8 | 8 | B.1.599 | 0.029197 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 8 | 8 | C.37.1 | 0.020942 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 8 | 8 | Q.1 | 0.001011 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaG | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 7 | 7 | B.1.427 | 0.000353 |
ORF1ab/nsp1 | 156 | D156A | gAt | gCt | 6 | 7 | B.1.617.2 | 0.000023 |
ORF1ab/nsp1 | 156 | D156A | gAT | gCC | 1 | 7 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp1 | 156 | D156V | gAt | gTt | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 6 | 6 | B | 0.000767 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaG | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp1 | 156 | D156A | gAt | gCt | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 5 | 5 | B.1.1.507 | 0.043478 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaA | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 4 | 4 | B | 0.000511 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp1 | 156 | D156A | gAt | gCt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaG | 3 | 4 | B.1.1.7 | 0.000003 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaA | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 4 | 4 | B.1.349 | 0.002859 |
ORF1ab/nsp1 | 156 | D156N | GaT | AaC | 3 | 4 | B.1.596 | 0.000261 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 4 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp1 | 156 | D156H | Gat | Cat | 3 | 4 | B.1.617.2 | 0.000011 |
ORF1ab/nsp1 | 156 | D156H | GaT | CaC | 1 | 4 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaG | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp1 | 156 | D156A | gAt | gCt | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp1 | 156 | D156A | gAt | gCt | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | B.1.1.372 | 0.002066 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | B.1.1.409 | 0.008499 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 3 | 3 | B.1.1.413 | 0.02069 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 156 | D156Y | GaT | TaC | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 156 | D156R | GAt | CGt | 2 | 2 | All | 0 |
ORF1ab/nsp1 | 156 | D156S | GAt | TCt | 1 | 2 | All | 0 |
ORF1ab/nsp1 | 156 | D156S | GAT | TCC | 1 | 2 | All | 0 |
ORF1ab/nsp1 | 156 | D156P | GAt | CCt | 1 | 2 | All | 0 |
ORF1ab/nsp1 | 156 | D156P | GAT | CCC | 1 | 2 | All | 0 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp1 | 156 | D156del1 | gaT | ga- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp1 | 156 | D156A | gAt | gCt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp1 | 156 | D156H | Gat | Cat | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp1 | 156 | D156A | gAt | gCt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.179 | 0.007519 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 2 | 2 | B.1.460 | 0.035714 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp1 | 156 | D156S | GAt | TCt | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 156 | D156P | GAT | CCC | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 156 | D156P | GAt | CCt | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 156 | D156S | GAT | TCC | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 2 | 2 | B.1.636 | 0.013423 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp1 | 156 | D156G | gAT | gGC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp1 | 156 | D156A | gAt | gCt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp1 | 156 | D156A | gAt | gCt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp1 | 156 | D156V | gAt | gTt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 156 | D156R | GAt | CGt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp1 | 156 | D156V | gAt | gTt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp1 | 156 | D156A | gAt | gCt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaG | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp1 | 156 | D156V | gAt | gTt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 156 | D156H | Gat | Cat | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp1 | 156 | D156V | gAt | gTt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp1 | 156 | D156R | GAt | CGt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaG | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 156 | D156A | gAt | gCt | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp1 | 156 | D156H | Gat | Cat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp1 | 156 | D156del1 | gaT | ga- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 156 | D156H | Gat | Cat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp1 | 156 | D156A | gAt | gCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp1 | 156 | D156del1 | Gat | -at | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp1 | 156 | D156A | gAt | gCt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp1 | 156 | D156V | gAt | gTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaA | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp1 | 156 | D156H | Gat | Cat | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 156 | D156V | gAt | gTt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 156 | D156del1 | gaT | ga- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 156 | D156del1 | Gat | -at | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp1 | 156 | D156H | Gat | Cat | 1 | 1 | B.1.423 | 0.010204 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 156 | D156del1 | gaT | ga- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.528 | 0.047619 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp1 | 156 | D156V | gAt | gTt | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp1 | 156 | D156Y | Gat | Tat | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp1 | 156 | D156V | gAt | gTt | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp1 | 156 | D156G | gAt | gGt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp1 | 156 | D156del | GAT | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp1 | 156 | D156A | gAt | gCt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp1 | 156 | D156Y | GaT | TaC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 156 | D156E | gaT | gaA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp1 | 156 | D156Y | GaT | TaC | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | P.4 | 0.003802 |
ORF1ab/nsp1 | 156 | D156D | gaT | gaC | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp1 | 156 | D156N | Gat | Aat | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp1 | 156 | D156del1 | gaT | ga- | 1 | 1 | Q.3 | 0.000145 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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