CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 151

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp1	151	T151T	T151T	syn	acT	acC	1577	1458	0.92454	716-718
ORF1ab/nsp1	151	T151T	T151T	syn	acT	acA	1577	71	0.0450222	716-718
ORF1ab/nsp1	151	T151T	T151T	syn	acT	acG	1577	48	0.0304375	716-718
ORF1ab/nsp1	151	T151I	T151I	nonsyn	aCt	aTt	247	241	0.975708	716-718
ORF1ab/nsp1	151	T151I	T151I	nonsyn	aCT	aTA	247	4	0.0161943	716-718
ORF1ab/nsp1	151	T151I	T151I	nonsyn	aCT	aTC	247	2	0.00809717	716-718
ORF1ab/nsp1	151	T151S	T151S	nonsyn	Act	Tct	196	109	0.556122	716-718
ORF1ab/nsp1	151	T151S	T151S	nonsyn	AcT	TcA	196	38	0.193878	716-718
ORF1ab/nsp1	151	T151S	T151S	nonsyn	aCt	aGt	196	31	0.158163	716-718
ORF1ab/nsp1	151	T151S	T151S	nonsyn	AcT	TcG	196	7	0.0357143	716-718
ORF1ab/nsp1	151	T151S	T151S	nonsyn	AcT	TcC	196	6	0.0306122	716-718
ORF1ab/nsp1	151	T151S	T151S	nonsyn	aCT	aGC	196	5	0.0255102	716-718
ORF1ab/nsp1	151	T151A	T151A	nonsyn	Act	Gct	148	121	0.817568	716-718
ORF1ab/nsp1	151	T151A	T151A	nonsyn	AcT	GcA	148	18	0.121622	716-718
ORF1ab/nsp1	151	T151A	T151A	nonsyn	AcT	GcG	148	7	0.0472973	716-718
ORF1ab/nsp1	151	T151A	T151A	nonsyn	AcT	GcC	148	2	0.0135135	716-718
ORF1ab/nsp1	151	T151R	T151R	nonsyn	ACt	CGt	63	20	0.31746	716-718
ORF1ab/nsp1	151	T151R	T151R	nonsyn	aCT	aGA	63	19	0.301587	716-718
ORF1ab/nsp1	151	T151R	T151R	nonsyn	ACT	CGA	63	16	0.253968	716-718
ORF1ab/nsp1	151	T151R	T151R	nonsyn	aCT	aGG	63	4	0.0634921	716-718
ORF1ab/nsp1	151	T151R	T151R	nonsyn	ACT	CGG	63	2	0.031746	716-718
ORF1ab/nsp1	151	T151R	T151R	nonsyn	ACT	CGC	63	2	0.031746	716-718
ORF1ab/nsp1	151	T151P	T151P	nonsyn	Act	Cct	61	31	0.508197	716-718
ORF1ab/nsp1	151	T151P	T151P	nonsyn	AcT	CcA	61	19	0.311475	716-718
ORF1ab/nsp1	151	T151P	T151P	nonsyn	AcT	CcG	61	8	0.131148	716-718
ORF1ab/nsp1	151	T151P	T151P	nonsyn	AcT	CcC	61	3	0.0491803	716-718
ORF1ab/nsp1	151	T151N	T151N	nonsyn	aCt	aAt	57	55	0.964912	716-718
ORF1ab/nsp1	151	T151N	T151N	nonsyn	aCT	aAC	57	2	0.0350877	716-718
ORF1ab/nsp1	151	T151del	T151del	del	ACT	---	53	53	1	716-718
ORF1ab/nsp1	151	T151C	T151C	nonsyn	ACt	TGt	50	43	0.86	716-718
ORF1ab/nsp1	151	T151C	T151C	nonsyn	ACT	TGC	50	7	0.14	716-718
ORF1ab/nsp1	151	T151G	T151G	nonsyn	ACt	GGt	44	20	0.454545	716-718
ORF1ab/nsp1	151	T151G	T151G	nonsyn	ACT	GGA	44	17	0.386364	716-718
ORF1ab/nsp1	151	T151G	T151G	nonsyn	ACT	GGG	44	4	0.0909091	716-718
ORF1ab/nsp1	151	T151G	T151G	nonsyn	ACT	GGC	44	3	0.0681818	716-718
ORF1ab/nsp1	151	T151X	T151X	nonsyn	ACT	TGA	38	33	0.868421	716-718
ORF1ab/nsp1	151	T151X	T151X	nonsyn	ACT	TAA	38	4	0.105263	716-718
ORF1ab/nsp1	151	T151X	T151X	nonsyn	ACT	TAG	38	1	0.0263158	716-718
ORF1ab/nsp1	151	T151L	T151L	nonsyn	ACt	CTt	28	9	0.321429	716-718
ORF1ab/nsp1	151	T151L	T151L	nonsyn	ACT	TTA	28	6	0.214286	716-718
ORF1ab/nsp1	151	T151L	T151L	nonsyn	ACT	CTG	28	6	0.214286	716-718
ORF1ab/nsp1	151	T151L	T151L	nonsyn	ACT	TTG	28	4	0.142857	716-718
ORF1ab/nsp1	151	T151L	T151L	nonsyn	ACT	CTA	28	2	0.0714286	716-718
ORF1ab/nsp1	151	T151L	T151L	nonsyn	ACT	CTC	28	1	0.0357143	716-718
ORF1ab/nsp1	151	T151F	T151F	nonsyn	ACt	TTt	21	18	0.857143	716-718
ORF1ab/nsp1	151	T151F	T151F	nonsyn	ACT	TTC	21	3	0.142857	716-718
ORF1ab/nsp1	151	T151V	T151V	nonsyn	ACt	GTt	19	10	0.526316	716-718
ORF1ab/nsp1	151	T151V	T151V	nonsyn	ACT	GTA	19	5	0.263158	716-718
ORF1ab/nsp1	151	T151V	T151V	nonsyn	ACT	GTG	19	3	0.157895	716-718
ORF1ab/nsp1	151	T151V	T151V	nonsyn	ACT	GTC	19	1	0.0526316	716-718
ORF1ab/nsp1	151	T151Y	T151Y	nonsyn	ACt	TAt	14	11	0.785714	716-718
ORF1ab/nsp1	151	T151Y	T151Y	nonsyn	ACT	TAC	14	3	0.214286	716-718
ORF1ab/nsp1	151	T151M	T151M	nonsyn	aCT	aTG	6	6	1	716-718
ORF1ab/nsp1	151	T151K	T151K	nonsyn	aCT	aAA	6	5	0.833333	716-718
ORF1ab/nsp1	151	T151K	T151K	nonsyn	aCT	aAG	6	1	0.166667	716-718
ORF1ab/nsp1	151	T151H	T151H	nonsyn	ACt	CAt	5	4	0.8	716-718
ORF1ab/nsp1	151	T151del2	T151del2	del	ACt	--t	5	3	0.6	716-718
ORF1ab/nsp1	151	T151H	T151H	nonsyn	ACT	CAC	5	1	0.2	716-718
ORF1ab/nsp1	151	T151del2	T151del2	del	aCT	a--	5	1	0.2	716-718
ORF1ab/nsp1	151	T151del2	T151del2	del	ACT	--A	5	1	0.2	716-718
ORF1ab/nsp1	151	T151W	T151W	nonsyn	ACT	TGG	4	4	1	716-718
ORF1ab/nsp1	151	T151D	T151D	nonsyn	ACt	GAt	3	3	1	716-718
ORF1ab/nsp1	151	T151Q	T151Q	nonsyn	ACT	CAA	2	2	1	716-718
ORF1ab/nsp1	151	T151E	T151E	nonsyn	ACT	GAA	1	1	1	716-718
ORF1ab/nsp1	151	T151del1	T151del1	del	acT	ac-	1	1	1	716-718

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp1	151	T151T	acT	acC	1458	1577	All	0.000279
ORF1ab/nsp1	151	T151T	acT	acA	71	1577	All	0.000014
ORF1ab/nsp1	151	T151T	acT	acG	48	1577	All	0.000009
ORF1ab/nsp1	151	T151T	acT	acC	1342	1403	B.1.1.7	0.001201
ORF1ab/nsp1	151	T151T	acT	acG	36	1403	B.1.1.7	0.000032
ORF1ab/nsp1	151	T151T	acT	acA	25	1403	B.1.1.7	0.000022
ORF1ab/nsp1	151	T151I	aCt	aTt	241	247	All	0.000046
ORF1ab/nsp1	151	T151I	aCT	aTA	4	247	All	0.000001
ORF1ab/nsp1	151	T151I	aCT	aTC	2	247	All	0
ORF1ab/nsp1	151	T151S	Act	Tct	109	196	All	0.000021
ORF1ab/nsp1	151	T151S	AcT	TcA	38	196	All	0.000007
ORF1ab/nsp1	151	T151S	aCt	aGt	31	196	All	0.000006
ORF1ab/nsp1	151	T151S	AcT	TcG	7	196	All	0.000001
ORF1ab/nsp1	151	T151S	AcT	TcC	6	196	All	0.000001
ORF1ab/nsp1	151	T151S	aCT	aGC	5	196	All	0.000001
ORF1ab/nsp1	151	T151A	Act	Gct	121	148	All	0.000023
ORF1ab/nsp1	151	T151A	AcT	GcA	18	148	All	0.000003
ORF1ab/nsp1	151	T151A	AcT	GcG	7	148	All	0.000001
ORF1ab/nsp1	151	T151A	AcT	GcC	2	148	All	0
ORF1ab/nsp1	151	T151S	Act	Tct	40	108	B.1.1.7	0.000036
ORF1ab/nsp1	151	T151S	AcT	TcA	35	108	B.1.1.7	0.000031
ORF1ab/nsp1	151	T151S	aCt	aGt	16	108	B.1.1.7	0.000014
ORF1ab/nsp1	151	T151S	AcT	TcG	7	108	B.1.1.7	0.000006
ORF1ab/nsp1	151	T151S	AcT	TcC	5	108	B.1.1.7	0.000004
ORF1ab/nsp1	151	T151S	aCT	aGC	5	108	B.1.1.7	0.000004
ORF1ab/nsp1	151	T151A	Act	Gct	81	81	B.1.274	0.964286
ORF1ab/nsp1	151	T151R	ACt	CGt	20	63	All	0.000004
ORF1ab/nsp1	151	T151R	aCT	aGA	19	63	All	0.000004
ORF1ab/nsp1	151	T151R	ACT	CGA	16	63	All	0.000003
ORF1ab/nsp1	151	T151R	aCT	aGG	4	63	All	0.000001
ORF1ab/nsp1	151	T151R	ACT	CGC	2	63	All	0
ORF1ab/nsp1	151	T151R	ACT	CGG	2	63	All	0
ORF1ab/nsp1	151	T151P	Act	Cct	31	61	All	0.000006
ORF1ab/nsp1	151	T151P	AcT	CcA	19	61	All	0.000004
ORF1ab/nsp1	151	T151P	AcT	CcG	8	61	All	0.000002
ORF1ab/nsp1	151	T151P	AcT	CcC	3	61	All	0.000001
ORF1ab/nsp1	151	T151N	aCt	aAt	55	57	All	0.000011
ORF1ab/nsp1	151	T151N	aCT	aAC	2	57	All	0
ORF1ab/nsp1	151	T151R	ACt	CGt	18	57	B.1.1.7	0.000016
ORF1ab/nsp1	151	T151R	ACT	CGA	16	57	B.1.1.7	0.000014
ORF1ab/nsp1	151	T151R	aCT	aGA	15	57	B.1.1.7	0.000013
ORF1ab/nsp1	151	T151R	aCT	aGG	4	57	B.1.1.7	0.000004
ORF1ab/nsp1	151	T151R	ACT	CGG	2	57	B.1.1.7	0.000002
ORF1ab/nsp1	151	T151R	ACT	CGC	2	57	B.1.1.7	0.000002
ORF1ab/nsp1	151	T151P	Act	Cct	25	55	B.1.1.7	0.000022
ORF1ab/nsp1	151	T151P	AcT	CcA	19	55	B.1.1.7	0.000017
ORF1ab/nsp1	151	T151P	AcT	CcG	8	55	B.1.1.7	0.000007
ORF1ab/nsp1	151	T151P	AcT	CcC	3	55	B.1.1.7	0.000003
ORF1ab/nsp1	151	T151del	ACT	---	53	53	All	0.00001
ORF1ab/nsp1	151	T151C	ACt	TGt	43	50	All	0.000008
ORF1ab/nsp1	151	T151C	ACT	TGC	7	50	All	0.000001
ORF1ab/nsp1	151	T151A	Act	Gct	18	45	B.1.1.7	0.000016
ORF1ab/nsp1	151	T151A	AcT	GcA	18	45	B.1.1.7	0.000016
ORF1ab/nsp1	151	T151A	AcT	GcG	7	45	B.1.1.7	0.000006
ORF1ab/nsp1	151	T151A	AcT	GcC	2	45	B.1.1.7	0.000002
ORF1ab/nsp1	151	T151G	ACt	GGt	20	44	All	0.000004
ORF1ab/nsp1	151	T151G	ACT	GGA	17	44	All	0.000003
ORF1ab/nsp1	151	T151G	ACT	GGG	4	44	All	0.000001
ORF1ab/nsp1	151	T151G	ACT	GGC	3	44	All	0.000001
ORF1ab/nsp1	151	T151C	ACt	TGt	35	42	B.1.1.7	0.000031
ORF1ab/nsp1	151	T151C	ACT	TGC	7	42	B.1.1.7	0.000006
ORF1ab/nsp1	151	T151I	aCt	aTt	41	41	AY.4	0.000064
ORF1ab/nsp1	151	T151I	aCt	aTt	38	39	B.1.617.2	0.000143
ORF1ab/nsp1	151	T151I	aCT	aTC	1	39	B.1.617.2	0.000004
ORF1ab/nsp1	151	T151X	ACT	TGA	33	38	All	0.000006
ORF1ab/nsp1	151	T151X	ACT	TAA	4	38	All	0.000001
ORF1ab/nsp1	151	T151X	ACT	TAG	1	38	All	0
ORF1ab/nsp1	151	T151G	ACT	GGA	16	36	B.1.1.7	0.000014
ORF1ab/nsp1	151	T151G	ACt	GGt	13	36	B.1.1.7	0.000012
ORF1ab/nsp1	151	T151G	ACT	GGG	4	36	B.1.1.7	0.000004
ORF1ab/nsp1	151	T151G	ACT	GGC	3	36	B.1.1.7	0.000003
ORF1ab/nsp1	151	T151X	ACT	TGA	30	35	B.1.1.7	0.000027
ORF1ab/nsp1	151	T151X	ACT	TAA	4	35	B.1.1.7	0.000004
ORF1ab/nsp1	151	T151X	ACT	TAG	1	35	B.1.1.7	0.000001
ORF1ab/nsp1	151	T151S	Act	Tct	33	34	AY.44	0.000201
ORF1ab/nsp1	151	T151S	aCt	aGt	1	34	AY.44	0.000006
ORF1ab/nsp1	151	T151I	aCt	aTt	27	30	B.1.1.7	0.000024
ORF1ab/nsp1	151	T151I	aCT	aTA	3	30	B.1.1.7	0.000003
ORF1ab/nsp1	151	T151L	ACt	CTt	9	28	All	0.000002
ORF1ab/nsp1	151	T151L	ACT	TTA	6	28	All	0.000001
ORF1ab/nsp1	151	T151L	ACT	CTG	6	28	All	0.000001
ORF1ab/nsp1	151	T151L	ACT	TTG	4	28	All	0.000001
ORF1ab/nsp1	151	T151L	ACT	CTA	2	28	All	0
ORF1ab/nsp1	151	T151L	ACT	CTC	1	28	All	0
ORF1ab/nsp1	151	T151L	ACT	TTA	6	25	B.1.1.7	0.000005
ORF1ab/nsp1	151	T151L	ACT	CTG	6	25	B.1.1.7	0.000005
ORF1ab/nsp1	151	T151L	ACt	CTt	6	25	B.1.1.7	0.000005
ORF1ab/nsp1	151	T151L	ACT	TTG	4	25	B.1.1.7	0.000004
ORF1ab/nsp1	151	T151L	ACT	CTA	2	25	B.1.1.7	0.000002
ORF1ab/nsp1	151	T151L	ACT	CTC	1	25	B.1.1.7	0.000001
ORF1ab/nsp1	151	T151T	acT	acC	22	22	B.1.1.418	0.5
ORF1ab/nsp1	151	T151F	ACt	TTt	18	21	All	0.000003
ORF1ab/nsp1	151	T151F	ACT	TTC	3	21	All	0.000001
ORF1ab/nsp1	151	T151I	aCt	aTt	20	20	AY.119	0.000706
ORF1ab/nsp1	151	T151V	ACt	GTt	10	19	All	0.000002
ORF1ab/nsp1	151	T151V	ACT	GTA	5	19	All	0.000001
ORF1ab/nsp1	151	T151V	ACT	GTG	3	19	All	0.000001
ORF1ab/nsp1	151	T151V	ACT	GTC	1	19	All	0
ORF1ab/nsp1	151	T151T	acT	acC	16	19	AY.4	0.000025
ORF1ab/nsp1	151	T151T	acT	acA	3	19	AY.4	0.000005
ORF1ab/nsp1	151	T151I	aCt	aTt	18	18	AY.3	0.000179
ORF1ab/nsp1	151	T151N	aCt	aAt	14	16	B.1.1.7	0.000013
ORF1ab/nsp1	151	T151N	aCT	aAC	2	16	B.1.1.7	0.000002
ORF1ab/nsp1	151	T151S	Act	Tct	8	15	B.1	0.000073
ORF1ab/nsp1	151	T151S	aCt	aGt	6	15	B.1	0.000055
ORF1ab/nsp1	151	T151S	AcT	TcA	1	15	B.1	0.000009
ORF1ab/nsp1	151	T151Y	ACt	TAt	11	14	All	0.000002
ORF1ab/nsp1	151	T151Y	ACT	TAC	3	14	All	0.000001
ORF1ab/nsp1	151	T151I	aCt	aTt	14	14	AY.44	0.000085
ORF1ab/nsp1	151	T151T	acT	acC	12	12	AY.30	0.004749
ORF1ab/nsp1	151	T151del	ACT	---	12	12	B.1.1.7	0.000011
ORF1ab/nsp1	151	T151F	ACt	TTt	10	12	B.1.1.7	0.000009
ORF1ab/nsp1	151	T151V	ACt	GTt	5	12	B.1.1.7	0.000004
ORF1ab/nsp1	151	T151V	ACT	GTA	3	12	B.1.1.7	0.000003
ORF1ab/nsp1	151	T151V	ACT	GTG	3	12	B.1.1.7	0.000003
ORF1ab/nsp1	151	T151F	ACT	TTC	2	12	B.1.1.7	0.000002
ORF1ab/nsp1	151	T151V	ACT	GTC	1	12	B.1.1.7	0.000001
ORF1ab/nsp1	151	T151T	acT	acC	5	12	B.1.617.2	0.000019
ORF1ab/nsp1	151	T151T	acT	acA	4	12	B.1.617.2	0.000015
ORF1ab/nsp1	151	T151T	acT	acG	3	12	B.1.617.2	0.000011
ORF1ab/nsp1	151	T151T	acT	acC	11	11	AY.3	0.000109
ORF1ab/nsp1	151	T151S	Act	Tct	11	11	AY.4	0.000017
ORF1ab/nsp1	151	T151N	aCt	aAt	11	11	AY.43	0.000049
ORF1ab/nsp1	151	T151Y	ACt	TAt	8	11	B.1.1.7	0.000007
ORF1ab/nsp1	151	T151Y	ACT	TAC	3	11	B.1.1.7	0.000003
ORF1ab/nsp1	151	T151T	acT	acA	7	11	P.1	0.00011
ORF1ab/nsp1	151	T151T	acT	acC	4	11	P.1	0.000063
ORF1ab/nsp1	151	T151I	aCt	aTt	9	10	AY.43	0.00004
ORF1ab/nsp1	151	T151I	aCT	aTC	1	10	AY.43	0.000004
ORF1ab/nsp1	151	T151T	acT	acC	4	10	AY.44	0.000024
ORF1ab/nsp1	151	T151T	acT	acG	4	10	AY.44	0.000024
ORF1ab/nsp1	151	T151T	acT	acA	2	10	AY.44	0.000012
ORF1ab/nsp1	151	T151I	aCt	aTt	9	9	B.1	0.000082
ORF1ab/nsp1	151	T151S	Act	Tct	5	7	B.1.617.2	0.000019
ORF1ab/nsp1	151	T151S	AcT	TcC	1	7	B.1.617.2	0.000004
ORF1ab/nsp1	151	T151S	aCt	aGt	1	7	B.1.617.2	0.000004
ORF1ab/nsp1	151	T151M	aCT	aTG	6	6	All	0.000001
ORF1ab/nsp1	151	T151K	aCT	aAA	5	6	All	0.000001
ORF1ab/nsp1	151	T151K	aCT	aAG	1	6	All	0
ORF1ab/nsp1	151	T151T	acT	acC	6	6	AY.43	0.000027
ORF1ab/nsp1	151	T151M	aCT	aTG	6	6	B.1.1.7	0.000005
ORF1ab/nsp1	151	T151H	ACt	CAt	4	5	All	0.000001
ORF1ab/nsp1	151	T151del2	ACt	--t	3	5	All	0.000001
ORF1ab/nsp1	151	T151del2	aCT	a--	1	5	All	0
ORF1ab/nsp1	151	T151H	ACT	CAC	1	5	All	0
ORF1ab/nsp1	151	T151del2	ACT	--A	1	5	All	0
ORF1ab/nsp1	151	T151T	acT	acC	2	5	AY.25	0.000012
ORF1ab/nsp1	151	T151T	acT	acA	2	5	AY.25	0.000012
ORF1ab/nsp1	151	T151T	acT	acG	1	5	AY.25	0.000006
ORF1ab/nsp1	151	T151N	aCt	aAt	5	5	AY.29	0.000079
ORF1ab/nsp1	151	T151P	Act	Cct	5	5	B.1	0.000046
ORF1ab/nsp1	151	T151F	ACt	TTt	5	5	B.1	0.000046
ORF1ab/nsp1	151	T151K	aCT	aAA	4	5	B.1.1.7	0.000004
ORF1ab/nsp1	151	T151K	aCT	aAG	1	5	B.1.1.7	0.000001
ORF1ab/nsp1	151	T151I	aCt	aTt	5	5	B.1.2	0.000044
ORF1ab/nsp1	151	T151T	acT	acC	4	4	A.27	0.006623
ORF1ab/nsp1	151	T151W	ACT	TGG	4	4	All	0.000001
ORF1ab/nsp1	151	T151N	aCt	aAt	4	4	AY.103	0.000025
ORF1ab/nsp1	151	T151I	aCt	aTt	4	4	AY.103	0.000025
ORF1ab/nsp1	151	T151N	aCt	aAt	4	4	AY.34	0.000388
ORF1ab/nsp1	151	T151A	Act	Gct	4	4	B.1	0.000037
ORF1ab/nsp1	151	T151C	ACt	TGt	4	4	B.1	0.000037
ORF1ab/nsp1	151	T151del	ACT	---	4	4	B.1.1.33	0.001684
ORF1ab/nsp1	151	T151del	ACT	---	4	4	B.1.1.348	0.003185
ORF1ab/nsp1	151	T151W	ACT	TGG	4	4	B.1.1.7	0.000004
ORF1ab/nsp1	151	T151H	ACt	CAt	3	4	B.1.1.7	0.000003
ORF1ab/nsp1	151	T151H	ACT	CAC	1	4	B.1.1.7	0.000001
ORF1ab/nsp1	151	T151T	acT	acC	4	4	B.1.429	0.000094
ORF1ab/nsp1	151	T151D	ACt	GAt	3	3	All	0.000001
ORF1ab/nsp1	151	T151N	aCt	aAt	3	3	AY.25	0.000018
ORF1ab/nsp1	151	T151S	Act	Tct	1	3	AY.25	0.000006
ORF1ab/nsp1	151	T151S	aCt	aGt	1	3	AY.25	0.000006
ORF1ab/nsp1	151	T151S	AcT	TcA	1	3	AY.25	0.000006
ORF1ab/nsp1	151	T151del	ACT	---	3	3	AY.4	0.000005
ORF1ab/nsp1	151	T151A	Act	Gct	3	3	AY.4	0.000005
ORF1ab/nsp1	151	T151T	acT	acA	3	3	AY.6	0.000123
ORF1ab/nsp1	151	T151A	Act	Gct	3	3	AY.98.1	0.000145
ORF1ab/nsp1	151	T151I	aCt	aTt	3	3	AY.99.2	0.000276
ORF1ab/nsp1	151	T151G	ACt	GGt	3	3	B.1	0.000027
ORF1ab/nsp1	151	T151T	acT	acA	2	3	B.1	0.000018
ORF1ab/nsp1	151	T151R	ACt	CGt	2	3	B.1	0.000018
ORF1ab/nsp1	151	T151R	aCT	aGA	1	3	B.1	0.000009
ORF1ab/nsp1	151	T151T	acT	acC	1	3	B.1	0.000009
ORF1ab/nsp1	151	T151T	acT	acC	3	3	B.1.1.222	0.000612
ORF1ab/nsp1	151	T151I	aCt	aTt	3	3	B.1.1.519	0.000119
ORF1ab/nsp1	151	T151I	aCt	aTt	3	3	B.1.324	0.004815
ORF1ab/nsp1	151	T151I	aCt	aTt	3	3	B.1.351	0.000089
ORF1ab/nsp1	151	T151S	AcT	TcA	1	3	B.1.576	0.000907
ORF1ab/nsp1	151	T151S	aCt	aGt	1	3	B.1.576	0.000907
ORF1ab/nsp1	151	T151S	Act	Tct	1	3	B.1.576	0.000907
ORF1ab/nsp1	151	T151Q	ACT	CAA	2	2	All	0
ORF1ab/nsp1	151	T151T	acT	acC	1	2	AY.103	0.000006
ORF1ab/nsp1	151	T151T	acT	acA	1	2	AY.103	0.000006
ORF1ab/nsp1	151	T151S	Act	Tct	2	2	AY.116	0.000574
ORF1ab/nsp1	151	T151I	aCt	aTt	2	2	AY.12	0.000632
ORF1ab/nsp1	151	T151T	acT	acC	2	2	AY.120	0.000074
ORF1ab/nsp1	151	T151I	aCt	aTt	2	2	AY.120.1	0.000642
ORF1ab/nsp1	151	T151D	ACt	GAt	2	2	AY.16.1	0.00094
ORF1ab/nsp1	151	T151I	aCt	aTt	2	2	AY.25	0.000012
ORF1ab/nsp1	151	T151T	acT	acA	2	2	AY.27	0.000129
ORF1ab/nsp1	151	T151del	ACT	---	2	2	AY.35	0.000466
ORF1ab/nsp1	151	T151T	acT	acA	2	2	AY.39	0.000049
ORF1ab/nsp1	151	T151del	ACT	---	2	2	AY.43	0.000009
ORF1ab/nsp1	151	T151I	aCt	aTt	2	2	AY.46	0.000208
ORF1ab/nsp1	151	T151T	acT	acC	2	2	AY.9	0.000135
ORF1ab/nsp1	151	T151T	acT	acA	2	2	AY.9.2	0.000073
ORF1ab/nsp1	151	T151del	ACT	---	2	2	B.1	0.000018
ORF1ab/nsp1	151	T151L	ACt	CTt	2	2	B.1	0.000018
ORF1ab/nsp1	151	T151V	ACt	GTt	2	2	B.1	0.000018
ORF1ab/nsp1	151	T151S	aCt	aGt	1	2	B.1.1	0.000018
ORF1ab/nsp1	151	T151S	Act	Tct	1	2	B.1.1	0.000018
ORF1ab/nsp1	151	T151A	Act	Gct	2	2	B.1.1.214	0.000111
ORF1ab/nsp1	151	T151T	acT	acC	2	2	B.1.1.420	0.002012
ORF1ab/nsp1	151	T151Q	ACT	CAA	2	2	B.1.1.7	0.000002
ORF1ab/nsp1	151	T151T	acT	acA	2	2	B.1.160	0.000062
ORF1ab/nsp1	151	T151A	Act	Gct	2	2	B.1.177	0.000026
ORF1ab/nsp1	151	T151T	acT	acC	2	2	B.1.2	0.000018
ORF1ab/nsp1	151	T151S	Act	Tct	1	2	B.1.417	0.028571
ORF1ab/nsp1	151	T151S	aCt	aGt	1	2	B.1.417	0.028571
ORF1ab/nsp1	151	T151I	aCt	aTt	2	2	B.1.426	0.002018
ORF1ab/nsp1	151	T151T	acT	acC	2	2	B.1.526	0.000047
ORF1ab/nsp1	151	T151del	ACT	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp1	151	T151N	aCt	aAt	2	2	B.1.617.2	0.000008
ORF1ab/nsp1	151	T151F	ACt	TTt	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	151	T151F	ACT	TTC	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	151	T151T	acT	acA	2	2	D.3	0.011834
ORF1ab/nsp1	151	T151del	ACT	---	2	2	N.4	0.008511
ORF1ab/nsp1	151	T151del	ACT	---	2	2	N.6	0.014184
ORF1ab/nsp1	151	T151N	aCt	aAt	2	2	P.1	0.000032
ORF1ab/nsp1	151	T151del	ACT	---	2	2	P.1	0.000032
ORF1ab/nsp1	151	T151V	ACT	GTA	1	2	P.1	0.000016
ORF1ab/nsp1	151	T151V	ACt	GTt	1	2	P.1	0.000016
ORF1ab/nsp1	151	T151G	ACT	GGA	1	2	P.1	0.000016
ORF1ab/nsp1	151	T151I	aCt	aTt	1	2	P.1	0.000016
ORF1ab/nsp1	151	T151G	ACt	GGt	1	2	P.1	0.000016
ORF1ab/nsp1	151	T151I	aCT	aTA	1	2	P.1	0.000016
ORF1ab/nsp1	151	T151T	acT	acA	2	2	P.1.15	0.000465
ORF1ab/nsp1	151	T151del	ACT	---	2	2	P.2	0.000373
ORF1ab/nsp1	151	T151E	ACT	GAA	1	1	All	0
ORF1ab/nsp1	151	T151del1	acT	ac-	1	1	All	0
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.100	0.000046
ORF1ab/nsp1	151	T151T	acT	acC	1	1	AY.102	0.000027
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.102	0.000027
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.111	0.000183
ORF1ab/nsp1	151	T151S	Act	Tct	1	1	AY.115	0.005208
ORF1ab/nsp1	151	T151del	ACT	---	1	1	AY.116	0.000287
ORF1ab/nsp1	151	T151T	acT	acC	1	1	AY.117	0.000085
ORF1ab/nsp1	151	T151T	acT	acC	1	1	AY.119	0.000035
ORF1ab/nsp1	151	T151del	ACT	---	1	1	AY.12	0.000316
ORF1ab/nsp1	151	T151N	aCt	aAt	1	1	AY.120.1	0.000321
ORF1ab/nsp1	151	T151T	acT	acA	1	1	AY.13	0.000161
ORF1ab/nsp1	151	T151T	acT	acG	1	1	AY.16	0.00038
ORF1ab/nsp1	151	T151T	acT	acC	1	1	AY.16.1	0.00047
ORF1ab/nsp1	151	T151N	aCt	aAt	1	1	AY.20	0.000039
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.23	0.00007
ORF1ab/nsp1	151	T151X	ACT	TGA	1	1	AY.25	0.000006
ORF1ab/nsp1	151	T151A	Act	Gct	1	1	AY.25	0.000006
ORF1ab/nsp1	151	T151R	aCT	aGA	1	1	AY.25	0.000006
ORF1ab/nsp1	151	T151del	ACT	---	1	1	AY.25	0.000006
ORF1ab/nsp1	151	T151C	ACt	TGt	1	1	AY.25	0.000006
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.29.1	0.000221
ORF1ab/nsp1	151	T151S	aCt	aGt	1	1	AY.32	0.000532
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.33	0.000067
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.38	0.000499
ORF1ab/nsp1	151	T151del	ACT	---	1	1	AY.38	0.000499
ORF1ab/nsp1	151	T151N	aCt	aAt	1	1	AY.39	0.000025
ORF1ab/nsp1	151	T151T	acT	acC	1	1	AY.39.1	0.00004
ORF1ab/nsp1	151	T151N	aCt	aAt	1	1	AY.4	0.000002
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.4.2	0.000022
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.4.2.1	0.000149
ORF1ab/nsp1	151	T151del	ACT	---	1	1	AY.4.5	0.000107
ORF1ab/nsp1	151	T151T	acT	acG	1	1	AY.40	0.000964
ORF1ab/nsp1	151	T151S	Act	Tct	1	1	AY.43	0.000004
ORF1ab/nsp1	151	T151H	ACt	CAt	1	1	AY.43	0.000004
ORF1ab/nsp1	151	T151A	Act	Gct	1	1	AY.43	0.000004
ORF1ab/nsp1	151	T151S	Act	Tct	1	1	AY.46	0.000104
ORF1ab/nsp1	151	T151del	ACT	---	1	1	AY.46	0.000104
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.47	0.000031
ORF1ab/nsp1	151	T151S	Act	Tct	1	1	AY.47	0.000031
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.5	0.000021
ORF1ab/nsp1	151	T151N	aCt	aAt	1	1	AY.5	0.000021
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.5.4	0.000277
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.54	0.000095
ORF1ab/nsp1	151	T151T	acT	acC	1	1	AY.54	0.000095
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.58	0.000907
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.65	0.000533
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.70	0.000209
ORF1ab/nsp1	151	T151del2	ACt	--t	1	1	AY.71	0.000475
ORF1ab/nsp1	151	T151T	acT	acC	1	1	AY.74	0.000116
ORF1ab/nsp1	151	T151del	ACT	---	1	1	AY.75.1	0.00018
ORF1ab/nsp1	151	T151T	acT	acA	1	1	AY.87	0.000833
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.88	0.000884
ORF1ab/nsp1	151	T151T	acT	acA	1	1	AY.9.1	0.000084
ORF1ab/nsp1	151	T151del	ACT	---	1	1	AY.9.1	0.000084
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.9.2	0.000037
ORF1ab/nsp1	151	T151del	ACT	---	1	1	AY.95	0.000761
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	AY.99	0.001049
ORF1ab/nsp1	151	T151Y	ACt	TAt	1	1	B.1	0.000009
ORF1ab/nsp1	151	T151N	aCt	aAt	1	1	B.1	0.000009
ORF1ab/nsp1	151	T151X	ACT	TGA	1	1	B.1	0.000009
ORF1ab/nsp1	151	T151G	ACt	GGt	1	1	B.1.1	0.000018
ORF1ab/nsp1	151	T151A	Act	Gct	1	1	B.1.1	0.000018
ORF1ab/nsp1	151	T151C	ACt	TGt	1	1	B.1.1	0.000018
ORF1ab/nsp1	151	T151T	acT	acC	1	1	B.1.1	0.000018
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	B.1.1	0.000018
ORF1ab/nsp1	151	T151F	ACt	TTt	1	1	B.1.1.1	0.000327
ORF1ab/nsp1	151	T151N	aCt	aAt	1	1	B.1.1.1	0.000327
ORF1ab/nsp1	151	T151S	Act	Tct	1	1	B.1.1.1	0.000327
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	B.1.1.1	0.000327
ORF1ab/nsp1	151	T151Y	ACt	TAt	1	1	B.1.1.1	0.000327
ORF1ab/nsp1	151	T151T	acT	acA	1	1	B.1.1.153	0.001095
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	B.1.1.312	0.001912
ORF1ab/nsp1	151	T151T	acT	acA	1	1	B.1.1.39	0.00051
ORF1ab/nsp1	151	T151N	aCt	aAt	1	1	B.1.1.519	0.00004
ORF1ab/nsp1	151	T151T	acT	acG	1	1	B.1.1.519	0.00004
ORF1ab/nsp1	151	T151del2	ACt	--t	1	1	B.1.1.7	0.000001
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	B.1.160	0.000031
ORF1ab/nsp1	151	T151del	ACT	---	1	1	B.1.160.7	0.002079
ORF1ab/nsp1	151	T151S	aCt	aGt	1	1	B.1.177	0.000013
ORF1ab/nsp1	151	T151A	Act	Gct	1	1	B.1.177.23	0.003236
ORF1ab/nsp1	151	T151del2	ACt	--t	1	1	B.1.177.4	0.000211
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	B.1.177.44	0.000519
ORF1ab/nsp1	151	T151N	aCt	aAt	1	1	B.1.177.55	0.002331
ORF1ab/nsp1	151	T151T	acT	acA	1	1	B.1.177.57	0.000281
ORF1ab/nsp1	151	T151V	ACT	GTA	1	1	B.1.177.7	0.000165
ORF1ab/nsp1	151	T151V	ACt	GTt	1	1	B.1.2	0.000009
ORF1ab/nsp1	151	T151A	Act	Gct	1	1	B.1.2	0.000009
ORF1ab/nsp1	151	T151P	Act	Cct	1	1	B.1.2	0.000009
ORF1ab/nsp1	151	T151L	ACt	CTt	1	1	B.1.2	0.000009
ORF1ab/nsp1	151	T151T	acT	acC	1	1	B.1.201	0.005682
ORF1ab/nsp1	151	T151T	acT	acA	1	1	B.1.221	0.000071
ORF1ab/nsp1	151	T151T	acT	acC	1	1	B.1.258	0.000067
ORF1ab/nsp1	151	T151N	aCt	aAt	1	1	B.1.258	0.000067
ORF1ab/nsp1	151	T151T	acT	acG	1	1	B.1.351	0.00003
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	B.1.351.3	0.000876
ORF1ab/nsp1	151	T151del	ACT	---	1	1	B.1.36	0.000146
ORF1ab/nsp1	151	T151S	Act	Tct	1	1	B.1.36.18	0.00042
ORF1ab/nsp1	151	T151V	ACt	GTt	1	1	B.1.417	0.028571
ORF1ab/nsp1	151	T151F	ACt	TTt	1	1	B.1.417	0.028571
ORF1ab/nsp1	151	T151G	ACt	GGt	1	1	B.1.417	0.028571
ORF1ab/nsp1	151	T151A	Act	Gct	1	1	B.1.417	0.028571
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	B.1.417	0.028571
ORF1ab/nsp1	151	T151C	ACt	TGt	1	1	B.1.417	0.028571
ORF1ab/nsp1	151	T151del	ACT	---	1	1	B.1.427	0.00005
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	B.1.428	0.00102
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	B.1.429	0.000024
ORF1ab/nsp1	151	T151del	ACT	---	1	1	B.1.429	0.000024
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	B.1.526	0.000024
ORF1ab/nsp1	151	T151X	ACT	TGA	1	1	B.1.576	0.000907
ORF1ab/nsp1	151	T151R	aCT	aGA	1	1	B.1.576	0.000907
ORF1ab/nsp1	151	T151C	ACt	TGt	1	1	B.1.576	0.000907
ORF1ab/nsp1	151	T151T	acT	acA	1	1	B.1.576	0.000907
ORF1ab/nsp1	151	T151T	acT	acA	1	1	B.1.596	0.000087
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	B.1.596	0.000087
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	B.1.609	0.000479
ORF1ab/nsp1	151	T151Y	ACt	TAt	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	151	T151del2	aCT	a--	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	151	T151T	acT	acA	1	1	B.1.627	0.00202
ORF1ab/nsp1	151	T151G	ACt	GGt	1	1	B.6	0.00091
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	C.17	0.055556
ORF1ab/nsp1	151	T151del	ACT	---	1	1	C.35	0.000774
ORF1ab/nsp1	151	T151A	Act	Gct	1	1	C.36.3	0.000567
ORF1ab/nsp1	151	T151A	Act	Gct	1	1	C.37	0.000116
ORF1ab/nsp1	151	T151I	aCt	aTt	1	1	D.2	0.000075
ORF1ab/nsp1	151	T151S	aCt	aGt	1	1	P.1	0.000016
ORF1ab/nsp1	151	T151D	ACt	GAt	1	1	P.1	0.000016
ORF1ab/nsp1	151	T151E	ACT	GAA	1	1	P.1	0.000016
ORF1ab/nsp1	151	T151R	aCT	aGA	1	1	P.1	0.000016
ORF1ab/nsp1	151	T151K	aCT	aAA	1	1	P.1	0.000016
ORF1ab/nsp1	151	T151del1	acT	ac-	1	1	P.1.1	0.000318
ORF1ab/nsp1	151	T151T	acT	acC	1	1	Q.3	0.000145
ORF1ab/nsp1	151	T151del2	ACT	--A	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.