CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 150 | G150S | G150S | nonsyn | Ggc | Agc | 1160 | 1047 | 0.902586 | 713-715 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1047 | 1160 | All | 0.0002 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 268 | 268 | P.1 | 0.004222 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 164 | 255 | B.1.1.7 | 0.000147 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 71 | 71 | B.1.351 | 0.002111 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 55 | 66 | B.1 | 0.000504 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 55 | 55 | AY.3 | 0.000547 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 47 | 47 | AY.4 | 0.000073 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 45 | 45 | AY.46.6 | 0.003249 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 37 | 37 | B.1.1.519 | 0.001469 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 34 | 36 | AY.25 | 0.000205 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 32 | 32 | R.1 | 0.00288 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 28 | 28 | AY.29.1 | 0.006174 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 23 | 23 | AY.29 | 0.000363 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 17 | 19 | B.1.617.2 | 0.000064 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 13 | 13 | AY.103 | 0.000081 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 10 | 12 | B.1.1 | 0.000181 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 10 | 10 | B.1.623 | 0.005365 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 7 | 7 | AY.23 | 0.000488 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 6 | 6 | AU.2 | 0.014528 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 6 | 6 | B.1.36.36 | 0.003612 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 5 | 5 | B.1.177.35 | 0.003455 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 3 | 4 | AY.43 | 0.000013 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 4 | 4 | B.1.1.354 | 0.017544 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 3 | 3 | B.1.1.141 | 0.006036 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 2 | 0.055556 | |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 2 | 2 | B.1.110 | 0.00905 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 2 | B.1.258 | 0.000067 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp1 | 150 | G150S | Ggc | Agc | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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