CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 150

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp1	150	G150G	G150G	syn	ggC	ggT	1592	1483	0.931533	713-715
ORF1ab/nsp1	150	G150G	G150G	syn	ggC	ggA	1592	61	0.0383166	713-715
ORF1ab/nsp1	150	G150G	G150G	syn	ggC	ggG	1592	48	0.0301508	713-715
ORF1ab/nsp1	150	G150S	G150S	nonsyn	Ggc	Agc	1160	1047	0.902586	713-715
ORF1ab/nsp1	150	G150S	G150S	nonsyn	GGC	TCA	1160	46	0.0396552	713-715
ORF1ab/nsp1	150	G150S	G150S	nonsyn	GGC	TCG	1160	35	0.0301724	713-715
ORF1ab/nsp1	150	G150S	G150S	nonsyn	GGC	TCT	1160	12	0.0103448	713-715
ORF1ab/nsp1	150	G150S	G150S	nonsyn	GGc	TCc	1160	12	0.0103448	713-715
ORF1ab/nsp1	150	G150S	G150S	nonsyn	GgC	AgT	1160	8	0.00689655	713-715
ORF1ab/nsp1	150	G150C	G150C	nonsyn	Ggc	Tgc	935	920	0.983957	713-715
ORF1ab/nsp1	150	G150C	G150C	nonsyn	GgC	TgT	935	15	0.0160428	713-715
ORF1ab/nsp1	150	G150V	G150V	nonsyn	gGc	gTc	754	727	0.964191	713-715
ORF1ab/nsp1	150	G150V	G150V	nonsyn	gGC	gTG	754	10	0.0132626	713-715
ORF1ab/nsp1	150	G150V	G150V	nonsyn	gGC	gTA	754	9	0.0119363	713-715
ORF1ab/nsp1	150	G150V	G150V	nonsyn	gGC	gTT	754	8	0.0106101	713-715
ORF1ab/nsp1	150	G150D	G150D	nonsyn	gGc	gAc	517	510	0.98646	713-715
ORF1ab/nsp1	150	G150D	G150D	nonsyn	gGC	gAT	517	7	0.0135397	713-715
ORF1ab/nsp1	150	G150A	G150A	nonsyn	gGC	gCA	115	41	0.356522	713-715
ORF1ab/nsp1	150	G150A	G150A	nonsyn	gGC	gCG	115	34	0.295652	713-715
ORF1ab/nsp1	150	G150A	G150A	nonsyn	gGc	gCc	115	26	0.226087	713-715
ORF1ab/nsp1	150	G150A	G150A	nonsyn	gGC	gCT	115	14	0.121739	713-715
ORF1ab/nsp1	150	G150X	G150X	nonsyn	GgC	TgA	70	55	0.785714	713-715
ORF1ab/nsp1	150	G150X	G150X	nonsyn	GGC	TAA	70	8	0.114286	713-715
ORF1ab/nsp1	150	G150X	G150X	nonsyn	GGC	TAG	70	7	0.1	713-715
ORF1ab/nsp1	150	G150del	G150del	del	GGC	---	58	58	1	713-715
ORF1ab/nsp1	150	G150R	G150R	nonsyn	GgC	AgA	47	14	0.297872	713-715
ORF1ab/nsp1	150	G150R	G150R	nonsyn	GgC	AgG	47	12	0.255319	713-715
ORF1ab/nsp1	150	G150R	G150R	nonsyn	Ggc	Cgc	47	9	0.191489	713-715
ORF1ab/nsp1	150	G150R	G150R	nonsyn	GgC	CgT	47	6	0.12766	713-715
ORF1ab/nsp1	150	G150R	G150R	nonsyn	GgC	CgA	47	3	0.0638298	713-715
ORF1ab/nsp1	150	G150R	G150R	nonsyn	GgC	CgG	47	3	0.0638298	713-715
ORF1ab/nsp1	150	G150W	G150W	nonsyn	GgC	TgG	46	46	1	713-715
ORF1ab/nsp1	150	G150T	G150T	nonsyn	GGC	ACA	34	11	0.323529	713-715
ORF1ab/nsp1	150	G150T	G150T	nonsyn	GGC	ACG	34	10	0.294118	713-715
ORF1ab/nsp1	150	G150T	G150T	nonsyn	GGc	ACc	34	7	0.205882	713-715
ORF1ab/nsp1	150	G150T	G150T	nonsyn	GGC	ACT	34	6	0.176471	713-715
ORF1ab/nsp1	150	G150L	G150L	nonsyn	GGC	TTG	31	8	0.258065	713-715
ORF1ab/nsp1	150	G150L	G150L	nonsyn	GGC	TTA	31	8	0.258065	713-715
ORF1ab/nsp1	150	G150L	G150L	nonsyn	GGC	CTT	31	7	0.225806	713-715
ORF1ab/nsp1	150	G150L	G150L	nonsyn	GGc	CTc	31	5	0.16129	713-715
ORF1ab/nsp1	150	G150L	G150L	nonsyn	GGC	CTG	31	2	0.0645161	713-715
ORF1ab/nsp1	150	G150L	G150L	nonsyn	GGC	CTA	31	1	0.0322581	713-715
ORF1ab/nsp1	150	G150E	G150E	nonsyn	gGC	gAA	18	10	0.555556	713-715
ORF1ab/nsp1	150	G150E	G150E	nonsyn	gGC	gAG	18	8	0.444444	713-715
ORF1ab/nsp1	150	G150F	G150F	nonsyn	GGc	TTc	16	11	0.6875	713-715
ORF1ab/nsp1	150	G150F	G150F	nonsyn	GGC	TTT	16	5	0.3125	713-715
ORF1ab/nsp1	150	G150Y	G150Y	nonsyn	GGc	TAc	11	7	0.636364	713-715
ORF1ab/nsp1	150	G150Y	G150Y	nonsyn	GGC	TAT	11	4	0.363636	713-715
ORF1ab/nsp1	150	G150N	G150N	nonsyn	GGc	AAc	9	5	0.555556	713-715
ORF1ab/nsp1	150	G150N	G150N	nonsyn	GGC	AAT	9	4	0.444444	713-715
ORF1ab/nsp1	150	G150P	G150P	nonsyn	GGC	CCA	9	3	0.333333	713-715
ORF1ab/nsp1	150	G150P	G150P	nonsyn	GGC	CCT	9	3	0.333333	713-715
ORF1ab/nsp1	150	G150I	G150I	nonsyn	GGC	ATA	9	3	0.333333	713-715
ORF1ab/nsp1	150	G150I	G150I	nonsyn	GGC	ATT	9	3	0.333333	713-715
ORF1ab/nsp1	150	G150I	G150I	nonsyn	GGc	ATc	9	3	0.333333	713-715
ORF1ab/nsp1	150	G150P	G150P	nonsyn	GGc	CCc	9	2	0.222222	713-715
ORF1ab/nsp1	150	G150P	G150P	nonsyn	GGC	CCG	9	1	0.111111	713-715
ORF1ab/nsp1	150	G150K	G150K	nonsyn	GGC	AAG	6	3	0.5	713-715
ORF1ab/nsp1	150	G150K	G150K	nonsyn	GGC	AAA	6	3	0.5	713-715
ORF1ab/nsp1	150	G150M	G150M	nonsyn	GGC	ATG	5	5	1	713-715
ORF1ab/nsp1	150	G150del1	G150del1	del	Ggc	-gc	3	3	1	713-715
ORF1ab/nsp1	150	G150H	G150H	nonsyn	GGc	CAc	2	1	0.5	713-715
ORF1ab/nsp1	150	G150H	G150H	nonsyn	GGC	CAT	2	1	0.5	713-715
ORF1ab/nsp1	150	G150Q	G150Q	nonsyn	GGC	CAG	1	1	1	713-715

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp1	150	G150G	ggC	ggT	1483	1592	All	0.000284
ORF1ab/nsp1	150	G150G	ggC	ggA	61	1592	All	0.000012
ORF1ab/nsp1	150	G150G	ggC	ggG	48	1592	All	0.000009
ORF1ab/nsp1	150	G150S	Ggc	Agc	1047	1160	All	0.0002
ORF1ab/nsp1	150	G150S	GGC	TCA	46	1160	All	0.000009
ORF1ab/nsp1	150	G150S	GGC	TCG	35	1160	All	0.000007
ORF1ab/nsp1	150	G150S	GGc	TCc	12	1160	All	0.000002
ORF1ab/nsp1	150	G150S	GGC	TCT	12	1160	All	0.000002
ORF1ab/nsp1	150	G150S	GgC	AgT	8	1160	All	0.000002
ORF1ab/nsp1	150	G150C	Ggc	Tgc	920	935	All	0.000176
ORF1ab/nsp1	150	G150C	GgC	TgT	15	935	All	0.000003
ORF1ab/nsp1	150	G150V	gGc	gTc	727	754	All	0.000139
ORF1ab/nsp1	150	G150V	gGC	gTG	10	754	All	0.000002
ORF1ab/nsp1	150	G150V	gGC	gTA	9	754	All	0.000002
ORF1ab/nsp1	150	G150V	gGC	gTT	8	754	All	0.000002
ORF1ab/nsp1	150	G150D	gGc	gAc	510	517	All	0.000098
ORF1ab/nsp1	150	G150D	gGC	gAT	7	517	All	0.000001
ORF1ab/nsp1	150	G150V	gGc	gTc	469	481	B.1.1.7	0.00042
ORF1ab/nsp1	150	G150V	gGC	gTA	6	481	B.1.1.7	0.000005
ORF1ab/nsp1	150	G150V	gGC	gTG	5	481	B.1.1.7	0.000004
ORF1ab/nsp1	150	G150V	gGC	gTT	1	481	B.1.1.7	0.000001
ORF1ab/nsp1	150	G150G	ggC	ggT	367	367	B.1.3	0.960733
ORF1ab/nsp1	150	G150G	ggC	ggT	188	268	B.1.1.7	0.000168
ORF1ab/nsp1	150	G150G	ggC	ggA	46	268	B.1.1.7	0.000041
ORF1ab/nsp1	150	G150G	ggC	ggG	34	268	B.1.1.7	0.00003
ORF1ab/nsp1	150	G150S	Ggc	Agc	268	268	P.1	0.004222
ORF1ab/nsp1	150	G150S	Ggc	Agc	164	255	B.1.1.7	0.000147
ORF1ab/nsp1	150	G150S	GGC	TCA	40	255	B.1.1.7	0.000036
ORF1ab/nsp1	150	G150S	GGC	TCG	31	255	B.1.1.7	0.000028
ORF1ab/nsp1	150	G150S	GGC	TCT	9	255	B.1.1.7	0.000008
ORF1ab/nsp1	150	G150S	GGc	TCc	7	255	B.1.1.7	0.000006
ORF1ab/nsp1	150	G150S	GgC	AgT	4	255	B.1.1.7	0.000004
ORF1ab/nsp1	150	G150G	ggC	ggT	201	201	AY.110	0.02265
ORF1ab/nsp1	150	G150D	gGc	gAc	154	154	AY.42	0.006195
ORF1ab/nsp1	150	G150G	ggC	ggT	127	127	AY.43	0.000563
ORF1ab/nsp1	150	G150A	gGC	gCA	41	115	All	0.000008
ORF1ab/nsp1	150	G150A	gGC	gCG	34	115	All	0.000007
ORF1ab/nsp1	150	G150A	gGc	gCc	26	115	All	0.000005
ORF1ab/nsp1	150	G150A	gGC	gCT	14	115	All	0.000003
ORF1ab/nsp1	150	G150A	gGC	gCA	36	90	B.1.1.7	0.000032
ORF1ab/nsp1	150	G150A	gGC	gCG	29	90	B.1.1.7	0.000026
ORF1ab/nsp1	150	G150A	gGc	gCc	14	90	B.1.1.7	0.000013
ORF1ab/nsp1	150	G150A	gGC	gCT	11	90	B.1.1.7	0.00001
ORF1ab/nsp1	150	G150G	ggC	ggT	85	86	B.1.2	0.000748
ORF1ab/nsp1	150	G150G	ggC	ggA	1	86	B.1.2	0.000009
ORF1ab/nsp1	150	G150G	ggC	ggT	84	84	B.1.617.2	0.000316
ORF1ab/nsp1	150	G150C	Ggc	Tgc	80	80	AY.4	0.000125
ORF1ab/nsp1	150	G150D	gGc	gAc	76	76	AY.4	0.000118
ORF1ab/nsp1	150	G150S	Ggc	Agc	71	71	B.1.351	0.002111
ORF1ab/nsp1	150	G150X	GgC	TgA	55	70	All	0.000011
ORF1ab/nsp1	150	G150X	GGC	TAA	8	70	All	0.000002
ORF1ab/nsp1	150	G150X	GGC	TAG	7	70	All	0.000001
ORF1ab/nsp1	150	G150C	Ggc	Tgc	60	68	B.1.1.7	0.000054
ORF1ab/nsp1	150	G150C	GgC	TgT	8	68	B.1.1.7	0.000007
ORF1ab/nsp1	150	G150S	Ggc	Agc	55	66	B.1	0.000504
ORF1ab/nsp1	150	G150S	GGC	TCA	4	66	B.1	0.000037
ORF1ab/nsp1	150	G150S	GGc	TCc	3	66	B.1	0.000027
ORF1ab/nsp1	150	G150S	GGC	TCG	2	66	B.1	0.000018
ORF1ab/nsp1	150	G150S	GgC	AgT	1	66	B.1	0.000009
ORF1ab/nsp1	150	G150S	GGC	TCT	1	66	B.1	0.000009
ORF1ab/nsp1	150	G150G	ggC	ggT	62	64	AY.4	0.000096
ORF1ab/nsp1	150	G150G	ggC	ggA	2	64	AY.4	0.000003
ORF1ab/nsp1	150	G150G	ggC	ggT	62	62	AA.5	1
ORF1ab/nsp1	150	G150del	GGC	---	58	58	All	0.000011
ORF1ab/nsp1	150	G150S	Ggc	Agc	55	55	AY.3	0.000547
ORF1ab/nsp1	150	G150X	GgC	TgA	44	55	B.1.1.7	0.000039
ORF1ab/nsp1	150	G150X	GGC	TAA	6	55	B.1.1.7	0.000005
ORF1ab/nsp1	150	G150X	GGC	TAG	5	55	B.1.1.7	0.000004
ORF1ab/nsp1	150	G150D	gGc	gAc	54	54	AY.25	0.000325
ORF1ab/nsp1	150	G150C	Ggc	Tgc	54	54	B.1.351	0.001605
ORF1ab/nsp1	150	G150C	Ggc	Tgc	48	49	B.1.617.2	0.000181
ORF1ab/nsp1	150	G150C	GgC	TgT	1	49	B.1.617.2	0.000004
ORF1ab/nsp1	150	G150C	Ggc	Tgc	48	48	AY.25	0.000289
ORF1ab/nsp1	150	G150R	GgC	AgA	14	47	All	0.000003
ORF1ab/nsp1	150	G150R	GgC	AgG	12	47	All	0.000002
ORF1ab/nsp1	150	G150R	Ggc	Cgc	9	47	All	0.000002
ORF1ab/nsp1	150	G150R	GgC	CgT	6	47	All	0.000001
ORF1ab/nsp1	150	G150R	GgC	CgA	3	47	All	0.000001
ORF1ab/nsp1	150	G150R	GgC	CgG	3	47	All	0.000001
ORF1ab/nsp1	150	G150V	gGc	gTc	47	47	AY.4	0.000073
ORF1ab/nsp1	150	G150S	Ggc	Agc	47	47	AY.4	0.000073
ORF1ab/nsp1	150	G150W	GgC	TgG	46	46	All	0.000009
ORF1ab/nsp1	150	G150D	gGc	gAc	43	46	B.1.1.7	0.000038
ORF1ab/nsp1	150	G150D	gGC	gAT	3	46	B.1.1.7	0.000003
ORF1ab/nsp1	150	G150S	Ggc	Agc	45	45	AY.46.6	0.003249
ORF1ab/nsp1	150	G150C	Ggc	Tgc	42	43	B.1.1	0.000762
ORF1ab/nsp1	150	G150C	GgC	TgT	1	43	B.1.1	0.000018
ORF1ab/nsp1	150	G150C	Ggc	Tgc	41	41	B.1.241	0.033279
ORF1ab/nsp1	150	G150C	Ggc	Tgc	38	38	B.1.429	0.000894
ORF1ab/nsp1	150	G150S	Ggc	Agc	37	37	B.1.1.519	0.001469
ORF1ab/nsp1	150	G150C	Ggc	Tgc	36	37	B.1.2	0.000317
ORF1ab/nsp1	150	G150C	GgC	TgT	1	37	B.1.2	0.000009
ORF1ab/nsp1	150	G150G	ggC	ggT	36	36	AY.103	0.000224
ORF1ab/nsp1	150	G150S	Ggc	Agc	34	36	AY.25	0.000205
ORF1ab/nsp1	150	G150S	GGC	TCA	1	36	AY.25	0.000006
ORF1ab/nsp1	150	G150S	GGC	TCG	1	36	AY.25	0.000006
ORF1ab/nsp1	150	G150W	GgC	TgG	36	36	B.1.1.7	0.000032
ORF1ab/nsp1	150	G150G	ggC	ggT	35	35	AY.44	0.000213
ORF1ab/nsp1	150	G150G	ggC	ggT	20	35	B.1	0.000183
ORF1ab/nsp1	150	G150G	ggC	ggA	8	35	B.1	0.000073
ORF1ab/nsp1	150	G150G	ggC	ggG	7	35	B.1	0.000064
ORF1ab/nsp1	150	G150C	Ggc	Tgc	35	35	B.1.1.63	0.013503
ORF1ab/nsp1	150	G150T	GGC	ACA	11	34	All	0.000002
ORF1ab/nsp1	150	G150T	GGC	ACG	10	34	All	0.000002
ORF1ab/nsp1	150	G150T	GGc	ACc	7	34	All	0.000001
ORF1ab/nsp1	150	G150T	GGC	ACT	6	34	All	0.000001
ORF1ab/nsp1	150	G150C	Ggc	Tgc	31	34	B.1	0.000284
ORF1ab/nsp1	150	G150C	GgC	TgT	3	34	B.1	0.000027
ORF1ab/nsp1	150	G150S	Ggc	Agc	32	32	R.1	0.00288
ORF1ab/nsp1	150	G150L	GGC	TTA	8	31	All	0.000002
ORF1ab/nsp1	150	G150L	GGC	TTG	8	31	All	0.000002
ORF1ab/nsp1	150	G150L	GGC	CTT	7	31	All	0.000001
ORF1ab/nsp1	150	G150L	GGc	CTc	5	31	All	0.000001
ORF1ab/nsp1	150	G150L	GGC	CTG	2	31	All	0
ORF1ab/nsp1	150	G150L	GGC	CTA	1	31	All	0
ORF1ab/nsp1	150	G150T	GGC	ACA	10	29	B.1.1.7	0.000009
ORF1ab/nsp1	150	G150T	GGC	ACG	8	29	B.1.1.7	0.000007
ORF1ab/nsp1	150	G150T	GGC	ACT	6	29	B.1.1.7	0.000005
ORF1ab/nsp1	150	G150T	GGc	ACc	5	29	B.1.1.7	0.000004
ORF1ab/nsp1	150	G150S	Ggc	Agc	28	28	AY.29.1	0.006174
ORF1ab/nsp1	150	G150V	gGc	gTc	27	27	P.1.6	0.052529
ORF1ab/nsp1	150	G150C	Ggc	Tgc	26	26	AY.4.2	0.000564
ORF1ab/nsp1	150	G150G	ggC	ggT	23	25	AY.25	0.000138
ORF1ab/nsp1	150	G150G	ggC	ggG	1	25	AY.25	0.000006
ORF1ab/nsp1	150	G150G	ggC	ggA	1	25	AY.25	0.000006
ORF1ab/nsp1	150	G150C	Ggc	Tgc	25	25	AY.44	0.000152
ORF1ab/nsp1	150	G150R	GgC	AgA	12	25	B.1.1.7	0.000011
ORF1ab/nsp1	150	G150R	GgC	AgG	9	25	B.1.1.7	0.000008
ORF1ab/nsp1	150	G150R	GgC	CgA	2	25	B.1.1.7	0.000002
ORF1ab/nsp1	150	G150R	GgC	CgT	1	25	B.1.1.7	0.000001
ORF1ab/nsp1	150	G150R	GgC	CgG	1	25	B.1.1.7	0.000001
ORF1ab/nsp1	150	G150C	Ggc	Tgc	23	23	AY.102	0.00061
ORF1ab/nsp1	150	G150S	Ggc	Agc	23	23	AY.29	0.000363
ORF1ab/nsp1	150	G150G	ggC	ggT	22	22	AY.3	0.000219
ORF1ab/nsp1	150	G150C	Ggc	Tgc	22	22	P.1	0.000347
ORF1ab/nsp1	150	G150C	Ggc	Tgc	21	21	AY.43	0.000093
ORF1ab/nsp1	150	G150C	Ggc	Tgc	21	21	AY.99.2	0.001935
ORF1ab/nsp1	150	G150V	gGc	gTc	21	21	B.1.525	0.002376
ORF1ab/nsp1	150	G150S	Ggc	Agc	17	19	B.1.617.2	0.000064
ORF1ab/nsp1	150	G150S	GGc	TCc	1	19	B.1.617.2	0.000004
ORF1ab/nsp1	150	G150S	GGC	TCT	1	19	B.1.617.2	0.000004
ORF1ab/nsp1	150	G150E	gGC	gAA	10	18	All	0.000002
ORF1ab/nsp1	150	G150E	gGC	gAG	8	18	All	0.000002
ORF1ab/nsp1	150	G150C	Ggc	Tgc	18	18	B.1.1.207	0.021277
ORF1ab/nsp1	150	G150C	Ggc	Tgc	17	17	AY.113	0.002421
ORF1ab/nsp1	150	G150F	GGc	TTc	11	16	All	0.000002
ORF1ab/nsp1	150	G150F	GGC	TTT	5	16	All	0.000001
ORF1ab/nsp1	150	G150C	Ggc	Tgc	16	16	AY.13	0.002576
ORF1ab/nsp1	150	G150V	gGc	gTc	7	16	B.1	0.000064
ORF1ab/nsp1	150	G150V	gGC	gTT	4	16	B.1	0.000037
ORF1ab/nsp1	150	G150V	gGC	gTG	3	16	B.1	0.000027
ORF1ab/nsp1	150	G150V	gGC	gTA	2	16	B.1	0.000018
ORF1ab/nsp1	150	G150V	gGc	gTc	15	15	AY.3	0.000149
ORF1ab/nsp1	150	G150C	Ggc	Tgc	14	14	AY.103	0.000087
ORF1ab/nsp1	150	G150A	gGc	gCc	6	14	B.1	0.000055
ORF1ab/nsp1	150	G150A	gGC	gCA	4	14	B.1	0.000037
ORF1ab/nsp1	150	G150A	gGC	gCG	3	14	B.1	0.000027
ORF1ab/nsp1	150	G150A	gGC	gCT	1	14	B.1	0.000009
ORF1ab/nsp1	150	G150D	gGc	gAc	14	14	B.1.596	0.00122
ORF1ab/nsp1	150	G150V	gGc	gTc	13	14	B.1.617.2	0.000049
ORF1ab/nsp1	150	G150V	gGC	gTT	1	14	B.1.617.2	0.000004
ORF1ab/nsp1	150	G150S	Ggc	Agc	13	13	AY.103	0.000081
ORF1ab/nsp1	150	G150D	gGc	gAc	13	13	AY.26	0.000368
ORF1ab/nsp1	150	G150G	ggC	ggT	13	13	AY.75	0.000728
ORF1ab/nsp1	150	G150L	GGC	TTG	3	13	B.1	0.000027
ORF1ab/nsp1	150	G150L	GGC	CTT	3	13	B.1	0.000027
ORF1ab/nsp1	150	G150L	GGc	CTc	3	13	B.1	0.000027
ORF1ab/nsp1	150	G150L	GGC	TTA	2	13	B.1	0.000018
ORF1ab/nsp1	150	G150L	GGC	CTA	1	13	B.1	0.000009
ORF1ab/nsp1	150	G150L	GGC	CTG	1	13	B.1	0.000009
ORF1ab/nsp1	150	G150del	GGC	---	13	13	B.1.1.7	0.000012
ORF1ab/nsp1	150	G150E	gGC	gAA	7	13	B.1.1.7	0.000006
ORF1ab/nsp1	150	G150E	gGC	gAG	6	13	B.1.1.7	0.000005
ORF1ab/nsp1	150	G150D	gGc	gAc	13	13	B.1.2	0.000114
ORF1ab/nsp1	150	G150V	gGc	gTc	12	12	AY.102	0.000318
ORF1ab/nsp1	150	G150V	gGc	gTc	12	12	AY.25	0.000072
ORF1ab/nsp1	150	G150V	gGc	gTc	12	12	AY.29	0.000189
ORF1ab/nsp1	150	G150D	gGc	gAc	12	12	AY.39.1	0.000475
ORF1ab/nsp1	150	G150C	Ggc	Tgc	12	12	AY.9	0.000811
ORF1ab/nsp1	150	G150S	Ggc	Agc	10	12	B.1.1	0.000181
ORF1ab/nsp1	150	G150S	GGc	TCc	1	12	B.1.1	0.000018
ORF1ab/nsp1	150	G150S	GGC	TCT	1	12	B.1.1	0.000018
ORF1ab/nsp1	150	G150C	Ggc	Tgc	12	12	B.40	0.004372
ORF1ab/nsp1	150	G150Y	GGc	TAc	7	11	All	0.000001
ORF1ab/nsp1	150	G150Y	GGC	TAT	4	11	All	0.000001
ORF1ab/nsp1	150	G150V	gGc	gTc	11	11	AY.33	0.000735
ORF1ab/nsp1	150	G150C	Ggc	Tgc	11	11	AY.90	0.007529
ORF1ab/nsp1	150	G150X	GgC	TgA	7	11	B.1	0.000064
ORF1ab/nsp1	150	G150X	GGC	TAG	2	11	B.1	0.000018
ORF1ab/nsp1	150	G150X	GGC	TAA	2	11	B.1	0.000018
ORF1ab/nsp1	150	G150D	gGc	gAc	11	11	B.1.617.2	0.000041
ORF1ab/nsp1	150	G150G	ggC	ggT	10	10	AY.39	0.000247
ORF1ab/nsp1	150	G150R	Ggc	Cgc	3	10	B.1	0.000027
ORF1ab/nsp1	150	G150R	GgC	CgT	3	10	B.1	0.000027
ORF1ab/nsp1	150	G150R	GgC	AgG	2	10	B.1	0.000018
ORF1ab/nsp1	150	G150R	GgC	CgG	1	10	B.1	0.000009
ORF1ab/nsp1	150	G150R	GgC	CgA	1	10	B.1	0.000009
ORF1ab/nsp1	150	G150S	Ggc	Agc	10	10	B.1.623	0.005365
ORF1ab/nsp1	150	G150N	GGc	AAc	5	9	All	0.000001
ORF1ab/nsp1	150	G150N	GGC	AAT	4	9	All	0.000001
ORF1ab/nsp1	150	G150P	GGC	CCA	3	9	All	0.000001
ORF1ab/nsp1	150	G150I	GGC	ATA	3	9	All	0.000001
ORF1ab/nsp1	150	G150I	GGc	ATc	3	9	All	0.000001
ORF1ab/nsp1	150	G150P	GGC	CCT	3	9	All	0.000001
ORF1ab/nsp1	150	G150I	GGC	ATT	3	9	All	0.000001
ORF1ab/nsp1	150	G150P	GGc	CCc	2	9	All	0
ORF1ab/nsp1	150	G150P	GGC	CCG	1	9	All	0
ORF1ab/nsp1	150	G150G	ggC	ggT	6	9	AY.100	0.000276
ORF1ab/nsp1	150	G150G	ggC	ggG	3	9	AY.100	0.000138
ORF1ab/nsp1	150	G150C	Ggc	Tgc	9	9	AY.14	0.000792
ORF1ab/nsp1	150	G150D	gGc	gAc	9	9	AY.3	0.00009
ORF1ab/nsp1	150	G150V	gGc	gTc	9	9	AY.43	0.00004
ORF1ab/nsp1	150	G150S	Ggc	Agc	9	9	AY.44	0.000055
ORF1ab/nsp1	150	G150L	GGC	TTA	5	9	B.1.1.7	0.000004
ORF1ab/nsp1	150	G150L	GGC	TTG	3	9	B.1.1.7	0.000003
ORF1ab/nsp1	150	G150L	GGC	CTT	1	9	B.1.1.7	0.000001
ORF1ab/nsp1	150	G150V	gGc	gTc	9	9	R.1	0.00081
ORF1ab/nsp1	150	G150D	gGc	gAc	8	8	AY.43	0.000035
ORF1ab/nsp1	150	G150V	gGc	gTc	8	8	AY.44	0.000049
ORF1ab/nsp1	150	G150F	GGc	TTc	5	8	B.1	0.000046
ORF1ab/nsp1	150	G150F	GGC	TTT	3	8	B.1	0.000027
ORF1ab/nsp1	150	G150C	Ggc	Tgc	8	8	B.1.1.214	0.000444
ORF1ab/nsp1	150	G150S	Ggc	Agc	7	7	AY.23	0.000488
ORF1ab/nsp1	150	G150D	gGc	gAc	5	7	B.1	0.000046
ORF1ab/nsp1	150	G150D	gGC	gAT	2	7	B.1	0.000018
ORF1ab/nsp1	150	G150C	Ggc	Tgc	7	7	B.1.258	0.000466
ORF1ab/nsp1	150	G150K	GGC	AAG	3	6	All	0.000001
ORF1ab/nsp1	150	G150K	GGC	AAA	3	6	All	0.000001
ORF1ab/nsp1	150	G150S	Ggc	Agc	6	6	AU.2	0.014528
ORF1ab/nsp1	150	G150S	Ggc	Agc	6	6	AY.102	0.000159
ORF1ab/nsp1	150	G150G	ggC	ggT	6	6	AY.29	0.000095
ORF1ab/nsp1	150	G150D	gGc	gAc	6	6	AY.44	0.000037
ORF1ab/nsp1	150	G150S	Ggc	Agc	6	6	AY.99.2	0.000553
ORF1ab/nsp1	150	G150W	GgC	TgG	6	6	B.1	0.000055
ORF1ab/nsp1	150	G150Y	GGc	TAc	4	6	B.1	0.000037
ORF1ab/nsp1	150	G150Y	GGC	TAT	2	6	B.1	0.000018
ORF1ab/nsp1	150	G150S	Ggc	Agc	6	6	B.1.221	0.000426
ORF1ab/nsp1	150	G150V	gGc	gTc	6	6	B.1.240	0.001293
ORF1ab/nsp1	150	G150S	Ggc	Agc	6	6	B.1.36.36	0.003612
ORF1ab/nsp1	150	G150D	gGc	gAc	6	6	B.40	0.002186
ORF1ab/nsp1	150	G150C	Ggc	Tgc	6	6	C.37	0.000696
ORF1ab/nsp1	150	G150M	GGC	ATG	5	5	All	0.000001
ORF1ab/nsp1	150	G150G	ggC	ggT	5	5	AY.20	0.000194
ORF1ab/nsp1	150	G150C	Ggc	Tgc	5	5	AY.34	0.000485
ORF1ab/nsp1	150	G150S	Ggc	Agc	5	5	AY.39	0.000124
ORF1ab/nsp1	150	G150G	ggC	ggT	5	5	AY.6	0.000206
ORF1ab/nsp1	150	G150C	Ggc	Tgc	5	5	B.1.1.1	0.001633
ORF1ab/nsp1	150	G150Y	GGc	TAc	3	5	B.1.1.7	0.000003
ORF1ab/nsp1	150	G150I	GGC	ATA	3	5	B.1.1.7	0.000003
ORF1ab/nsp1	150	G150Y	GGC	TAT	2	5	B.1.1.7	0.000002
ORF1ab/nsp1	150	G150I	GGc	ATc	1	5	B.1.1.7	0.000001
ORF1ab/nsp1	150	G150I	GGC	ATT	1	5	B.1.1.7	0.000001
ORF1ab/nsp1	150	G150S	Ggc	Agc	5	5	B.1.177	0.000066
ORF1ab/nsp1	150	G150C	Ggc	Tgc	5	5	B.1.177	0.000066
ORF1ab/nsp1	150	G150S	Ggc	Agc	5	5	B.1.177.35	0.003455
ORF1ab/nsp1	150	G150G	ggC	ggT	5	5	B.1.232	0.002687
ORF1ab/nsp1	150	G150S	Ggc	Agc	5	5	B.1.240	0.001078
ORF1ab/nsp1	150	G150C	Ggc	Tgc	5	5	B.1.420	0.052083
ORF1ab/nsp1	150	G150G	ggC	ggT	5	5	C.37	0.00058
ORF1ab/nsp1	150	G150D	gGc	gAc	5	5	P.1	0.000079
ORF1ab/nsp1	150	G150D	gGc	gAc	4	4	AY.103	0.000025
ORF1ab/nsp1	150	G150V	gGc	gTc	4	4	AY.120	0.000149
ORF1ab/nsp1	150	G150G	ggC	ggT	4	4	AY.121	0.000541
ORF1ab/nsp1	150	G150C	Ggc	Tgc	4	4	AY.3	0.00004
ORF1ab/nsp1	150	G150C	Ggc	Tgc	4	4	AY.39.1	0.000158
ORF1ab/nsp1	150	G150S	Ggc	Agc	3	4	AY.43	0.000013
ORF1ab/nsp1	150	G150S	GgC	AgT	1	4	AY.43	0.000004
ORF1ab/nsp1	150	G150D	gGc	gAc	4	4	AY.6	0.000165
ORF1ab/nsp1	150	G150C	Ggc	Tgc	4	4	AY.9.2	0.000147
ORF1ab/nsp1	150	G150D	gGc	gAc	4	4	AY.98.1	0.000194
ORF1ab/nsp1	150	G150E	gGC	gAG	2	4	B.1	0.000018
ORF1ab/nsp1	150	G150E	gGC	gAA	2	4	B.1	0.000018
ORF1ab/nsp1	150	G150G	ggC	ggT	4	4	B.1.1.214	0.000222
ORF1ab/nsp1	150	G150del	GGC	---	4	4	B.1.1.33	0.001684
ORF1ab/nsp1	150	G150del	GGC	---	4	4	B.1.1.348	0.003185
ORF1ab/nsp1	150	G150S	Ggc	Agc	4	4	B.1.1.354	0.017544
ORF1ab/nsp1	150	G150G	ggC	ggT	4	4	B.1.1.519	0.000159
ORF1ab/nsp1	150	G150M	GGC	ATG	4	4	B.1.1.7	0.000004
ORF1ab/nsp1	150	G150P	GGC	CCA	2	4	B.1.1.7	0.000002
ORF1ab/nsp1	150	G150P	GGC	CCT	1	4	B.1.1.7	0.000001
ORF1ab/nsp1	150	G150P	GGC	CCG	1	4	B.1.1.7	0.000001
ORF1ab/nsp1	150	G150D	gGc	gAc	4	4	B.1.177	0.000053
ORF1ab/nsp1	150	G150V	gGc	gTc	3	4	B.1.258	0.0002
ORF1ab/nsp1	150	G150V	gGC	gTT	1	4	B.1.258	0.000067
ORF1ab/nsp1	150	G150L	GGC	CTT	1	4	B.1.417	0.028571
ORF1ab/nsp1	150	G150L	GGc	CTc	1	4	B.1.417	0.028571
ORF1ab/nsp1	150	G150L	GGC	TTG	1	4	B.1.417	0.028571
ORF1ab/nsp1	150	G150L	GGC	CTG	1	4	B.1.417	0.028571
ORF1ab/nsp1	150	G150G	ggC	ggT	4	4	B.1.429	0.000094
ORF1ab/nsp1	150	G150C	Ggc	Tgc	4	4	B.1.466.2	0.001565
ORF1ab/nsp1	150	G150C	Ggc	Tgc	4	4	B.1.526	0.000094
ORF1ab/nsp1	150	G150G	ggC	ggT	3	4	P.1	0.000047
ORF1ab/nsp1	150	G150G	ggC	ggA	1	4	P.1	0.000016
ORF1ab/nsp1	150	G150del1	Ggc	-gc	3	3	All	0.000001
ORF1ab/nsp1	150	G150V	gGc	gTc	3	3	AY.103	0.000019
ORF1ab/nsp1	150	G150D	gGc	gAc	3	3	AY.119	0.000106
ORF1ab/nsp1	150	G150C	Ggc	Tgc	3	3	AY.20	0.000117
ORF1ab/nsp1	150	G150D	gGc	gAc	3	3	AY.20	0.000117
ORF1ab/nsp1	150	G150D	gGc	gAc	3	3	AY.39	0.000074
ORF1ab/nsp1	150	G150del	GGC	---	3	3	AY.4	0.000005
ORF1ab/nsp1	150	G150G	ggC	ggT	3	3	AY.46	0.000312
ORF1ab/nsp1	150	G150G	ggC	ggT	3	3	AY.53	0.000863
ORF1ab/nsp1	150	G150G	ggC	ggT	3	3	AY.9	0.000203
ORF1ab/nsp1	150	G150D	gGc	gAc	3	3	AY.99.2	0.000276
ORF1ab/nsp1	150	G150C	Ggc	Tgc	3	3	B	0.000383
ORF1ab/nsp1	150	G150P	GGC	CCA	1	3	B.1	0.000009
ORF1ab/nsp1	150	G150P	GGC	CCT	1	3	B.1	0.000009
ORF1ab/nsp1	150	G150P	GGc	CCc	1	3	B.1	0.000009
ORF1ab/nsp1	150	G150G	ggC	ggT	3	3	B.1.1	0.000054
ORF1ab/nsp1	150	G150D	gGc	gAc	3	3	B.1.1	0.000054
ORF1ab/nsp1	150	G150S	Ggc	Agc	3	3	B.1.1.141	0.006036
ORF1ab/nsp1	150	G150G	ggC	ggT	3	3	B.1.1.263	0.004673
ORF1ab/nsp1	150	G150G	ggC	ggT	3	3	B.1.1.411	0.044118
ORF1ab/nsp1	150	G150C	Ggc	Tgc	3	3	B.1.1.442	0.055556
ORF1ab/nsp1	150	G150K	GGC	AAG	2	3	B.1.1.7	0.000002
ORF1ab/nsp1	150	G150K	GGC	AAA	1	3	B.1.1.7	0.000001
ORF1ab/nsp1	150	G150V	gGc	gTc	2	3	B.1.177	0.000026
ORF1ab/nsp1	150	G150V	gGC	gTG	1	3	B.1.177	0.000013
ORF1ab/nsp1	150	G150G	ggC	ggT	3	3	B.1.258.17	0.000312
ORF1ab/nsp1	150	G150G	ggC	ggT	3	3	B.1.369	0.000856
ORF1ab/nsp1	150	G150V	gGc	gTc	1	3	B.1.417	0.028571
ORF1ab/nsp1	150	G150V	gGC	gTG	1	3	B.1.417	0.028571
ORF1ab/nsp1	150	G150V	gGC	gTT	1	3	B.1.417	0.028571
ORF1ab/nsp1	150	G150R	GgC	CgT	1	3	B.1.417	0.028571
ORF1ab/nsp1	150	G150R	Ggc	Cgc	1	3	B.1.417	0.028571
ORF1ab/nsp1	150	G150R	GgC	CgG	1	3	B.1.417	0.028571
ORF1ab/nsp1	150	G150C	Ggc	Tgc	3	3	B.1.525	0.000339
ORF1ab/nsp1	150	G150G	ggC	ggT	3	3	B.1.596	0.000261
ORF1ab/nsp1	150	G150S	Ggc	Agc	3	3	B.1.621	0.000266
ORF1ab/nsp1	150	G150C	Ggc	Tgc	3	3	B.1.621	0.000266
ORF1ab/nsp1	150	G150G	ggC	ggT	3	3	P.1.14	0.000143
ORF1ab/nsp1	150	G150C	Ggc	Tgc	3	3	Q.7	0.003333
ORF1ab/nsp1	150	G150D	gGC	gAT	1	2		0.055556
ORF1ab/nsp1	150	G150G	ggC	ggT	1	2		0.055556
ORF1ab/nsp1	150	G150S	GgC	AgT	1	2		0.055556
ORF1ab/nsp1	150	G150G	ggC	ggA	1	2		0.055556
ORF1ab/nsp1	150	G150N	GGc	AAc	1	2		0.055556
ORF1ab/nsp1	150	G150N	GGC	AAT	1	2		0.055556
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	2		0.055556
ORF1ab/nsp1	150	G150D	gGc	gAc	1	2		0.055556
ORF1ab/nsp1	150	G150C	Ggc	Tgc	2	2	A.2.5.1	0.009615
ORF1ab/nsp1	150	G150H	GGc	CAc	1	2	All	0
ORF1ab/nsp1	150	G150H	GGC	CAT	1	2	All	0
ORF1ab/nsp1	150	G150V	gGc	gTc	2	2	AU.2	0.004843
ORF1ab/nsp1	150	G150G	ggC	ggT	2	2	AY.102	0.000053
ORF1ab/nsp1	150	G150G	ggC	ggT	2	2	AY.118	0.000125
ORF1ab/nsp1	150	G150D	gGc	gAc	2	2	AY.120	0.000074
ORF1ab/nsp1	150	G150D	gGc	gAc	2	2	AY.121	0.000271
ORF1ab/nsp1	150	G150C	Ggc	Tgc	2	2	AY.16.1	0.00094
ORF1ab/nsp1	150	G150G	ggC	ggT	2	2	AY.23	0.000139
ORF1ab/nsp1	150	G150A	gGC	gCG	1	2	AY.25	0.000006
ORF1ab/nsp1	150	G150A	gGC	gCA	1	2	AY.25	0.000006
ORF1ab/nsp1	150	G150G	ggC	ggT	2	2	AY.26	0.000057
ORF1ab/nsp1	150	G150S	Ggc	Agc	2	2	AY.3.1	0.000171
ORF1ab/nsp1	150	G150G	ggC	ggT	1	2	AY.32	0.000532
ORF1ab/nsp1	150	G150G	ggC	ggA	1	2	AY.32	0.000532
ORF1ab/nsp1	150	G150S	Ggc	Agc	2	2	AY.33	0.000134
ORF1ab/nsp1	150	G150del	GGC	---	2	2	AY.35	0.000466
ORF1ab/nsp1	150	G150C	Ggc	Tgc	2	2	AY.39	0.000049
ORF1ab/nsp1	150	G150V	gGc	gTc	2	2	AY.39.1	0.000079
ORF1ab/nsp1	150	G150S	Ggc	Agc	2	2	AY.4.2	0.000043
ORF1ab/nsp1	150	G150C	Ggc	Tgc	2	2	AY.42	0.00008
ORF1ab/nsp1	150	G150del	GGC	---	2	2	AY.43	0.000009
ORF1ab/nsp1	150	G150V	gGc	gTc	2	2	AY.45	0.000243
ORF1ab/nsp1	150	G150C	Ggc	Tgc	2	2	AY.46.6	0.000144
ORF1ab/nsp1	150	G150D	gGc	gAc	2	2	AY.47	0.000062
ORF1ab/nsp1	150	G150C	Ggc	Tgc	2	2	AY.47	0.000062
ORF1ab/nsp1	150	G150V	gGc	gTc	2	2	AY.5.4	0.000553
ORF1ab/nsp1	150	G150S	Ggc	Agc	2	2	AY.6	0.000082
ORF1ab/nsp1	150	G150C	Ggc	Tgc	2	2	AY.61	0.00021
ORF1ab/nsp1	150	G150D	gGc	gAc	2	2	AY.75	0.000112
ORF1ab/nsp1	150	G150del	GGC	---	2	2	B.1	0.000018
ORF1ab/nsp1	150	G150N	GGc	AAc	1	2	B.1	0.000009
ORF1ab/nsp1	150	G150H	GGC	CAT	1	2	B.1	0.000009
ORF1ab/nsp1	150	G150H	GGc	CAc	1	2	B.1	0.000009
ORF1ab/nsp1	150	G150I	GGC	ATT	1	2	B.1	0.000009
ORF1ab/nsp1	150	G150I	GGc	ATc	1	2	B.1	0.000009
ORF1ab/nsp1	150	G150N	GGC	AAT	1	2	B.1	0.000009
ORF1ab/nsp1	150	G150T	GGC	ACG	1	2	B.1	0.000009
ORF1ab/nsp1	150	G150T	GGc	ACc	1	2	B.1	0.000009
ORF1ab/nsp1	150	G150A	gGC	gCT	1	2	B.1.1	0.000018
ORF1ab/nsp1	150	G150A	gGc	gCc	1	2	B.1.1	0.000018
ORF1ab/nsp1	150	G150C	Ggc	Tgc	2	2	B.1.1.189	0.003026
ORF1ab/nsp1	150	G150S	Ggc	Agc	2	2	B.1.1.216	0.001781
ORF1ab/nsp1	150	G150C	Ggc	Tgc	2	2	B.1.1.218	0.015385
ORF1ab/nsp1	150	G150C	Ggc	Tgc	2	2	B.1.1.220	0.003717
ORF1ab/nsp1	150	G150G	ggC	ggT	2	2	B.1.1.297	0.004474
ORF1ab/nsp1	150	G150G	ggC	ggT	2	2	B.1.1.306	0.000877
ORF1ab/nsp1	150	G150D	gGc	gAc	2	2	B.1.1.318	0.000604
ORF1ab/nsp1	150	G150F	GGc	TTc	2	2	B.1.1.7	0.000002
ORF1ab/nsp1	150	G150S	Ggc	Agc	2	2	B.1.110	0.00905
ORF1ab/nsp1	150	G150V	gGc	gTc	2	2	B.1.160	0.000062
ORF1ab/nsp1	150	G150S	Ggc	Agc	2	2	B.1.160	0.000062
ORF1ab/nsp1	150	G150G	ggC	ggT	2	2	B.1.160.10	0.016129
ORF1ab/nsp1	150	G150G	ggC	ggT	1	2	B.1.177	0.000013
ORF1ab/nsp1	150	G150G	ggC	ggG	1	2	B.1.177	0.000013
ORF1ab/nsp1	150	G150D	gGc	gAc	2	2	B.1.177.6	0.001953
ORF1ab/nsp1	150	G150S	Ggc	Agc	2	2	B.1.177.60	0.000437
ORF1ab/nsp1	150	G150S	Ggc	Agc	2	2	B.1.2	0.000018
ORF1ab/nsp1	150	G150V	gGc	gTc	2	2	B.1.234	0.000264
ORF1ab/nsp1	150	G150C	Ggc	Tgc	2	2	B.1.239	0.002442
ORF1ab/nsp1	150	G150D	gGC	gAT	1	2	B.1.258	0.000067
ORF1ab/nsp1	150	G150I	GGC	ATT	1	2	B.1.258	0.000067
ORF1ab/nsp1	150	G150I	GGc	ATc	1	2	B.1.258	0.000067
ORF1ab/nsp1	150	G150N	GGc	AAc	1	2	B.1.258	0.000067
ORF1ab/nsp1	150	G150D	gGc	gAc	1	2	B.1.258	0.000067
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	2	B.1.258	0.000067
ORF1ab/nsp1	150	G150S	GgC	AgT	1	2	B.1.258	0.000067
ORF1ab/nsp1	150	G150N	GGC	AAT	1	2	B.1.258	0.000067
ORF1ab/nsp1	150	G150C	Ggc	Tgc	2	2	B.1.258.17	0.000208
ORF1ab/nsp1	150	G150D	gGc	gAc	2	2	B.1.351	0.000059
ORF1ab/nsp1	150	G150C	Ggc	Tgc	2	2	B.1.36	0.000292
ORF1ab/nsp1	150	G150G	ggC	ggT	2	2	B.1.367	0.001585
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	2	B.1.417	0.028571
ORF1ab/nsp1	150	G150G	ggC	ggG	1	2	B.1.417	0.028571
ORF1ab/nsp1	150	G150G	ggC	ggT	1	2	B.1.417	0.028571
ORF1ab/nsp1	150	G150F	GGc	TTc	1	2	B.1.417	0.028571
ORF1ab/nsp1	150	G150C	GgC	TgT	1	2	B.1.417	0.028571
ORF1ab/nsp1	150	G150F	GGC	TTT	1	2	B.1.417	0.028571
ORF1ab/nsp1	150	G150D	gGc	gAc	2	2	B.1.429	0.000047
ORF1ab/nsp1	150	G150G	ggC	ggT	2	2	B.1.526	0.000047
ORF1ab/nsp1	150	G150C	Ggc	Tgc	2	2	B.1.560	0.009259
ORF1ab/nsp1	150	G150G	ggC	ggT	2	2	B.1.564	0.000852
ORF1ab/nsp1	150	G150R	GgC	AgG	1	2	B.1.576	0.000907
ORF1ab/nsp1	150	G150T	GGC	ACG	1	2	B.1.576	0.000907
ORF1ab/nsp1	150	G150T	GGC	ACA	1	2	B.1.576	0.000907
ORF1ab/nsp1	150	G150R	GgC	AgA	1	2	B.1.576	0.000907
ORF1ab/nsp1	150	G150S	GGC	TCA	1	2	B.1.576	0.000907
ORF1ab/nsp1	150	G150S	GGC	TCG	1	2	B.1.576	0.000907
ORF1ab/nsp1	150	G150del	GGC	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp1	150	G150R	Ggc	Cgc	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	150	G150P	GGc	CCc	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	150	G150P	GGC	CCT	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	150	G150L	GGc	CTc	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	150	G150A	gGc	gCc	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	150	G150A	gGC	gCT	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	150	G150R	GgC	CgT	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	150	G150L	GGC	CTT	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	150	G150F	GGc	TTc	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	150	G150F	GGC	TTT	1	2	B.1.617.2	0.000004
ORF1ab/nsp1	150	G150C	Ggc	Tgc	2	2	B.1.637	0.000146
ORF1ab/nsp1	150	G150C	Ggc	Tgc	2	2	C.36	0.001821
ORF1ab/nsp1	150	G150del	GGC	---	2	2	N.4	0.008511
ORF1ab/nsp1	150	G150del	GGC	---	2	2	N.6	0.014184
ORF1ab/nsp1	150	G150del	GGC	---	2	2	P.1	0.000032
ORF1ab/nsp1	150	G150V	gGC	gTA	1	2	P.1	0.000016
ORF1ab/nsp1	150	G150V	gGc	gTc	1	2	P.1	0.000016
ORF1ab/nsp1	150	G150S	Ggc	Agc	2	2	P.1.12	0.000968
ORF1ab/nsp1	150	G150D	gGc	gAc	2	2	P.1.13	0.001797
ORF1ab/nsp1	150	G150G	ggC	ggT	2	2	P.1.15	0.000465
ORF1ab/nsp1	150	G150C	Ggc	Tgc	2	2	P.1.17	0.000324
ORF1ab/nsp1	150	G150D	gGc	gAc	2	2	P.1.17	0.000324
ORF1ab/nsp1	150	G150S	Ggc	Agc	2	2	P.1.7	0.000639
ORF1ab/nsp1	150	G150del	GGC	---	2	2	P.2	0.000373
ORF1ab/nsp1	150	G150G	ggC	ggT	2	2	Q.4	0.00091
ORF1ab/nsp1	150	G150R	GgC	AgA	1	1		0.055556
ORF1ab/nsp1	150	G150K	GGC	AAA	1	1		0.055556
ORF1ab/nsp1	150	G150E	gGC	gAA	1	1		0.055556
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	A	0.000387
ORF1ab/nsp1	150	G150R	Ggc	Cgc	1	1	A.1	0.000282
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	A.1	0.000282
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	A.2.2	0.001689
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	A.2.5	0.000499
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	A.2.5	0.000499
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	AA.1	0.007246
ORF1ab/nsp1	150	G150Q	GGC	CAG	1	1	All	0
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	AY.1	0.000396
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	AY.100	0.000046
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.100	0.000046
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	AY.102	0.000027
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.105	0.000643
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.106	0.000335
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.109	0.00074
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	AY.114	0.000231
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.116	0.000287
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.116	0.000287
ORF1ab/nsp1	150	G150del	GGC	---	1	1	AY.116	0.000287
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	AY.118	0.000063
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.119	0.000035
ORF1ab/nsp1	150	G150del	GGC	---	1	1	AY.12	0.000316
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.120	0.000037
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	AY.120.2	0.001285
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.14	0.000088
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.16	0.00038
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	AY.16.1	0.00047
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	AY.20	0.000039
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.23	0.00007
ORF1ab/nsp1	150	G150del	GGC	---	1	1	AY.25	0.000006
ORF1ab/nsp1	150	G150X	GgC	TgA	1	1	AY.25	0.000006
ORF1ab/nsp1	150	G150W	GgC	TgG	1	1	AY.25	0.000006
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.27	0.000065
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	AY.29	0.000016
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.35	0.000233
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.37	0.000316
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	AY.37	0.000316
ORF1ab/nsp1	150	G150del	GGC	---	1	1	AY.38	0.000499
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.38	0.000499
ORF1ab/nsp1	150	G150A	gGc	gCc	1	1	AY.39	0.000025
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.39.1	0.00004
ORF1ab/nsp1	150	G150A	gGc	gCc	1	1	AY.4	0.000002
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	AY.4.2	0.000022
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.4.2	0.000022
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.4.2.1	0.000149
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	AY.4.4	0.000409
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	AY.4.5	0.000107
ORF1ab/nsp1	150	G150del	GGC	---	1	1	AY.4.5	0.000107
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.41	0.000294
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	AY.42	0.00004
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	AY.42	0.00004
ORF1ab/nsp1	150	G150N	GGc	AAc	1	1	AY.43	0.000004
ORF1ab/nsp1	150	G150del1	Ggc	-gc	1	1	AY.43	0.000004
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	AY.45	0.000122
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	AY.46	0.000104
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.46	0.000104
ORF1ab/nsp1	150	G150del	GGC	---	1	1	AY.46	0.000104
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.46.2	0.000635
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.46.4	0.000165
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	AY.46.4	0.000165
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	AY.46.6	0.000072
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	AY.47	0.000031
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.47	0.000031
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.5	0.000021
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.5	0.000021
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	AY.5	0.000021
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	AY.5	0.000021
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.50	0.000799
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	AY.51	0.000909
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.54	0.000095
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	AY.54	0.000095
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.54	0.000095
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	AY.59	0.00053
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	AY.59	0.00053
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.61	0.000105
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.62	0.000436
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.68	0.000274
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	AY.69	0.000187
ORF1ab/nsp1	150	G150del	GGC	---	1	1	AY.71	0.000475
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.71	0.000475
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.73	0.000665
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	AY.73	0.000665
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	AY.75	0.000056
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.75.1	0.00018
ORF1ab/nsp1	150	G150del	GGC	---	1	1	AY.75.1	0.00018
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.77	0.001127
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	AY.78	0.001541
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	AY.9	0.000068
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	AY.9.1	0.000084
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	AY.9.1	0.000084
ORF1ab/nsp1	150	G150del	GGC	---	1	1	AY.9.1	0.000084
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	AY.9.2	0.000037
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.95	0.000761
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.95	0.000761
ORF1ab/nsp1	150	G150del	GGC	---	1	1	AY.95	0.000761
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	AY.96	0.002075
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	AY.98	0.000079
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	AY.98.1	0.000048
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	B	0.000128
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	B	0.000128
ORF1ab/nsp1	150	G150K	GGC	AAA	1	1	B	0.000128
ORF1ab/nsp1	150	G150Q	GGC	CAG	1	1	B.1	0.000009
ORF1ab/nsp1	150	G150M	GGC	ATG	1	1	B.1	0.000009
ORF1ab/nsp1	150	G150K	GGC	AAG	1	1	B.1	0.000009
ORF1ab/nsp1	150	G150del1	Ggc	-gc	1	1	B.1	0.000009
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	B.1.1	0.000018
ORF1ab/nsp1	150	G150R	Ggc	Cgc	1	1	B.1.1.153	0.001095
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	B.1.1.16	0.055556
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	B.1.1.176	0.000439
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	B.1.1.214	0.000055
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	B.1.1.220	0.001859
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	B.1.1.25	0.000569
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	B.1.1.262	0.015152
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	B.1.1.263	0.001558
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	B.1.1.277	0.000759
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	B.1.1.28	0.000311
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	B.1.1.282	0.011628
ORF1ab/nsp1	150	G150A	gGc	gCc	1	1	B.1.1.301	0.001179
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	B.1.1.303	0.002762
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	B.1.1.306	0.000438
ORF1ab/nsp1	150	G150A	gGC	gCG	1	1	B.1.1.306	0.000438
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	B.1.1.33	0.000421
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	B.1.1.354	0.004386
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	B.1.1.413	0.006897
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	B.1.1.44	0.00241
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	B.1.1.462	0.008621
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	B.1.1.507	0.008696
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	B.1.1.519	0.00004
ORF1ab/nsp1	150	G150del1	Ggc	-gc	1	1	B.1.1.7	0.000001
ORF1ab/nsp1	150	G150N	GGC	AAT	1	1	B.1.1.7	0.000001
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	B.1.1.70	0.000341
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	B.1.1.99	0.02381
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	B.1.111	0.001175
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	B.1.128	0.000635
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	B.1.160	0.000031
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	B.1.160	0.000031
ORF1ab/nsp1	150	G150del	GGC	---	1	1	B.1.160.7	0.002079
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	B.1.160.8	0.001289
ORF1ab/nsp1	150	G150F	GGc	TTc	1	1	B.1.177	0.000013
ORF1ab/nsp1	150	G150L	GGC	TTG	1	1	B.1.177	0.000013
ORF1ab/nsp1	150	G150W	GgC	TgG	1	1	B.1.177	0.000013
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	B.1.177.12	0.000152
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	B.1.177.17	0.000821
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	B.1.177.21	0.000076
ORF1ab/nsp1	150	G150G	ggC	ggG	1	1	B.1.177.32	0.00135
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	B.1.177.4	0.000211
ORF1ab/nsp1	150	G150del	GGC	---	1	1	B.1.177.4	0.000211
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	B.1.177.57	0.000281
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	B.1.177.65	0.000665
ORF1ab/nsp1	150	G150L	GGC	CTT	1	1	B.1.177.7	0.000165
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	B.1.177.81	0.000189
ORF1ab/nsp1	150	G150X	GgC	TgA	1	1	B.1.2	0.000009
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	B.1.2	0.000009
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	B.1.206	0.000816
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	B.1.219	0.009434
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	B.1.234	0.000132
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	B.1.235	0.002519
ORF1ab/nsp1	150	G150A	gGc	gCc	1	1	B.1.240	0.000216
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	B.1.243	0.00007
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	B.1.243	0.00007
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	B.1.258	0.000067
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	B.1.260	0.003344
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	B.1.351	0.00003
ORF1ab/nsp1	150	G150del	GGC	---	1	1	B.1.36	0.000146
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	B.1.36.10	0.004785
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	B.1.400	0.000429
ORF1ab/nsp1	150	G150W	GgC	TgG	1	1	B.1.417	0.028571
ORF1ab/nsp1	150	G150del	GGC	---	1	1	B.1.427	0.00005
ORF1ab/nsp1	150	G150del	GGC	---	1	1	B.1.429	0.000024
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	B.1.429	0.000024
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	B.1.466.2	0.000391
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	B.1.521	0.004975
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	B.1.526	0.000024
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	B.1.561	0.000397
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	B.1.564	0.000426
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	B.1.572	0.025
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	B.1.575	0.000303
ORF1ab/nsp1	150	G150X	GgC	TgA	1	1	B.1.576	0.000907
ORF1ab/nsp1	150	G150W	GgC	TgG	1	1	B.1.576	0.000907
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	B.1.577	0.000687
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	B.1.582	0.000491
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	B.1.595	0.000261
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	B.1.596	0.000087
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	B.1.596	0.000087
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	B.1.609	0.000479
ORF1ab/nsp1	150	G150T	GGc	ACc	1	1	B.1.617.2	0.000004
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	B.1.621	0.000089
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	B.1.623	0.000536
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	B.1.625	0.002353
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	B.1.627	0.00202
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	B.1.628	0.000352
ORF1ab/nsp1	150	G150R	Ggc	Cgc	1	1	B.1.637	0.000073
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	C.1	0.002392
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	C.1	0.002392
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	C.13	0.025641
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	C.16	0.00106
ORF1ab/nsp1	150	G150N	GGc	AAc	1	1	C.17	0.055556
ORF1ab/nsp1	150	G150del	GGC	---	1	1	C.35	0.000774
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	C.36	0.000911
ORF1ab/nsp1	150	G150del	GGC	---	1	1	C.36.3	0.000567
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	C.37	0.000116
ORF1ab/nsp1	150	G150R	Ggc	Cgc	1	1	D.2	0.000075
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	D.2	0.000075
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	N.5	0.001767
ORF1ab/nsp1	150	G150X	GgC	TgA	1	1	P.1	0.000016
ORF1ab/nsp1	150	G150F	GGc	TTc	1	1	P.1	0.000016
ORF1ab/nsp1	150	G150L	GGC	TTA	1	1	P.1	0.000016
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	P.1.1	0.000318
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	P.1.10.1	0.00813
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	P.1.14	0.000048
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	P.1.15	0.000232
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	P.1.15	0.000232
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	P.1.4	0.000977
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	P.1.5	0.076923
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	P.1.7	0.000319
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	P.2	0.000187
ORF1ab/nsp1	150	G150G	ggC	ggT	1	1	P.2	0.000187
ORF1ab/nsp1	150	G150S	Ggc	Agc	1	1	Q.3	0.000145
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	Q.3	0.000145
ORF1ab/nsp1	150	G150V	gGc	gTc	1	1	Q.8	0.000165
ORF1ab/nsp1	150	G150del	GGC	---	1	1	Q.8	0.000165
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	Q.8	0.000165
ORF1ab/nsp1	150	G150C	Ggc	Tgc	1	1	R.1	0.00009
ORF1ab/nsp1	150	G150D	gGc	gAc	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.