CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 149

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1149L149LL149LsynctTctC9207110.772826710-712
ORF1ab/nsp1149L149LL149LsynctTctA9201000.108696710-712
ORF1ab/nsp1149L149LL149LsynctTctG920600.0652174710-712
ORF1ab/nsp1149L149LL149LsynCtTTtG920320.0347826710-712
ORF1ab/nsp1149L149LL149LsynCtTTtA920170.0184783710-712
ORF1ab/nsp1149L149FL149FnonsynCttTtt6586500.987842710-712
ORF1ab/nsp1149L149FL149FnonsynCtTTtC65880.0121581710-712
ORF1ab/nsp1149L149GL149GnonsynCTTGGG115420.365217710-712
ORF1ab/nsp1149L149GL149GnonsynCTtGGt115400.347826710-712
ORF1ab/nsp1149L149GL149GnonsynCTTGGA115260.226087710-712
ORF1ab/nsp1149L149GL149GnonsynCTTGGC11570.0608696710-712
ORF1ab/nsp1149L149VL149VnonsynCttGtt113670.59292710-712
ORF1ab/nsp1149L149VL149VnonsynCtTGtG113280.247788710-712
ORF1ab/nsp1149L149VL149VnonsynCtTGtA113110.0973451710-712
ORF1ab/nsp1149L149VL149VnonsynCtTGtC11370.0619469710-712
ORF1ab/nsp1149L149PL149PnonsyncTtcCt110850.772727710-712
ORF1ab/nsp1149L149PL149PnonsyncTTcCG110120.109091710-712
ORF1ab/nsp1149L149PL149PnonsyncTTcCA11090.0818182710-712
ORF1ab/nsp1149L149PL149PnonsyncTTcCC11040.0363636710-712
ORF1ab/nsp1149L149RL149RnonsyncTtcGt109520.477064710-712
ORF1ab/nsp1149L149RL149RnonsyncTTcGG109230.211009710-712
ORF1ab/nsp1149L149RL149RnonsyncTTcGA109180.165138710-712
ORF1ab/nsp1149L149RL149RnonsyncTTcGC10970.0642202710-712
ORF1ab/nsp1149L149RL149RnonsynCTTAGG10950.0458716710-712
ORF1ab/nsp1149L149RL149RnonsynCTTAGA10940.0366972710-712
ORF1ab/nsp1149L149SL149SnonsynCTTTCG88310.352273710-712
ORF1ab/nsp1149L149SL149SnonsynCTTTCA88240.272727710-712
ORF1ab/nsp1149L149SL149SnonsynCTtTCt88220.25710-712
ORF1ab/nsp1149L149SL149SnonsynCTTTCC8850.0568182710-712
ORF1ab/nsp1149L149SL149SnonsynCTtAGt8850.0568182710-712
ORF1ab/nsp1149L149SL149SnonsynCTTAGC8810.0113636710-712
ORF1ab/nsp1149L149IL149InonsynCttAtt60560.933333710-712
ORF1ab/nsp1149L149IL149InonsynCtTAtA6030.05710-712
ORF1ab/nsp1149L149IL149InonsynCtTAtC6010.0166667710-712
ORF1ab/nsp1149L149AL149AnonsynCTTGCG59240.40678710-712
ORF1ab/nsp1149L149AL149AnonsynCTtGCt59180.305085710-712
ORF1ab/nsp1149L149AL149AnonsynCTTGCA59160.271186710-712
ORF1ab/nsp1149L149AL149AnonsynCTTGCC5910.0169492710-712
ORF1ab/nsp1149L149WL149WnonsynCTTTGG58581710-712
ORF1ab/nsp1149L149delL149deldelCTT---58581710-712
ORF1ab/nsp1149L149XL149XnonsynCTTTGA55370.672727710-712
ORF1ab/nsp1149L149XL149XnonsynCTTTAG55120.218182710-712
ORF1ab/nsp1149L149XL149XnonsynCTTTAA5560.109091710-712
ORF1ab/nsp1149L149CL149CnonsynCTtTGt50430.86710-712
ORF1ab/nsp1149L149CL149CnonsynCTTTGC5070.14710-712
ORF1ab/nsp1149L149HL149HnonsyncTtcAt21200.952381710-712
ORF1ab/nsp1149L149HL149HnonsyncTTcAC2110.047619710-712
ORF1ab/nsp1149L149EL149EnonsynCTTGAG18120.666667710-712
ORF1ab/nsp1149L149EL149EnonsynCTTGAA1860.333333710-712
ORF1ab/nsp1149L149QL149QnonsyncTTcAG1490.642857710-712
ORF1ab/nsp1149L149QL149QnonsyncTTcAA1450.357143710-712
ORF1ab/nsp1149L149YL149YnonsynCTtTAt1090.9710-712
ORF1ab/nsp1149L149DL149DnonsynCTtGAt1090.9710-712
ORF1ab/nsp1149L149DL149DnonsynCTTGAC1010.1710-712
ORF1ab/nsp1149L149YL149YnonsynCTTTAC1010.1710-712
ORF1ab/nsp1149L149TL149TnonsynCTTACG830.375710-712
ORF1ab/nsp1149L149TL149TnonsynCTTACA830.375710-712
ORF1ab/nsp1149L149TL149TnonsynCTtACt820.25710-712
ORF1ab/nsp1149L149ML149MnonsynCtTAtG441710-712
ORF1ab/nsp1149L149del1L149del1delcTtc-t210.5710-712
ORF1ab/nsp1149L149del1L149del1delCtt-tt210.5710-712

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1149L149LctTctC711920All0.000136
ORF1ab/nsp1149L149LctTctA100920All0.000019
ORF1ab/nsp1149L149LctTctG60920All0.000011
ORF1ab/nsp1149L149LCtTTtG32920All0.000006
ORF1ab/nsp1149L149LCtTTtA17920All0.000003
ORF1ab/nsp1149L149FCttTtt650658All0.000124
ORF1ab/nsp1149L149FCtTTtC8658All0.000002
ORF1ab/nsp1149L149LctTctC331331AY.4.50.03558
ORF1ab/nsp1149L149FCttTtt233233AY.40.000363
ORF1ab/nsp1149L149GCTTGGG42115All0.000008
ORF1ab/nsp1149L149GCTtGGt40115All0.000008
ORF1ab/nsp1149L149GCTTGGA26115All0.000005
ORF1ab/nsp1149L149GCTTGGC7115All0.000001
ORF1ab/nsp1149L149VCttGtt67113All0.000013
ORF1ab/nsp1149L149VCtTGtG28113All0.000005
ORF1ab/nsp1149L149VCtTGtA11113All0.000002
ORF1ab/nsp1149L149VCtTGtC7113All0.000001
ORF1ab/nsp1149L149PcTtcCt85110All0.000016
ORF1ab/nsp1149L149PcTTcCG12110All0.000002
ORF1ab/nsp1149L149PcTTcCA9110All0.000002
ORF1ab/nsp1149L149PcTTcCC4110All0.000001
ORF1ab/nsp1149L149RcTtcGt52109All0.00001
ORF1ab/nsp1149L149RcTTcGG23109All0.000004
ORF1ab/nsp1149L149RcTTcGA18109All0.000003
ORF1ab/nsp1149L149RcTTcGC7109All0.000001
ORF1ab/nsp1149L149RCTTAGG5109All0.000001
ORF1ab/nsp1149L149RCTTAGA4109All0.000001
ORF1ab/nsp1149L149LctTctC9696AY.30.000955
ORF1ab/nsp1149L149LctTctC3295B.1.1.70.000029
ORF1ab/nsp1149L149LCtTTtG1995B.1.1.70.000017
ORF1ab/nsp1149L149LctTctA1895B.1.1.70.000016
ORF1ab/nsp1149L149LctTctG1795B.1.1.70.000015
ORF1ab/nsp1149L149LCtTTtA995B.1.1.70.000008
ORF1ab/nsp1149L149SCTTTCG3188All0.000006
ORF1ab/nsp1149L149SCTTTCA2488All0.000005
ORF1ab/nsp1149L149SCTtTCt2288All0.000004
ORF1ab/nsp1149L149SCTtAGt588All0.000001
ORF1ab/nsp1149L149SCTTTCC588All0.000001
ORF1ab/nsp1149L149SCTTAGC188All0
ORF1ab/nsp1149L149GCTTGGG3078B.1.1.70.000027
ORF1ab/nsp1149L149GCTtGGt2378B.1.1.70.000021
ORF1ab/nsp1149L149GCTTGGA1978B.1.1.70.000017
ORF1ab/nsp1149L149GCTTGGC678B.1.1.70.000005
ORF1ab/nsp1149L149SCTTTCG2668B.1.1.70.000023
ORF1ab/nsp1149L149SCTTTCA2068B.1.1.70.000018
ORF1ab/nsp1149L149SCTtTCt1468B.1.1.70.000013
ORF1ab/nsp1149L149SCTTTCC468B.1.1.70.000004
ORF1ab/nsp1149L149SCTtAGt368B.1.1.70.000003
ORF1ab/nsp1149L149SCTTAGC168B.1.1.70.000001
ORF1ab/nsp1149L149LctTctC6666AY.570.043307
ORF1ab/nsp1149L149ICttAtt5660All0.000011
ORF1ab/nsp1149L149ICtTAtA360All0.000001
ORF1ab/nsp1149L149ICtTAtC160All0
ORF1ab/nsp1149L149FCttTtt5560B.1.1.70.000049
ORF1ab/nsp1149L149FCtTTtC560B.1.1.70.000004
ORF1ab/nsp1149L149ACTTGCG2459All0.000005
ORF1ab/nsp1149L149ACTtGCt1859All0.000003
ORF1ab/nsp1149L149ACTTGCA1659All0.000003
ORF1ab/nsp1149L149ACTTGCC159All0
ORF1ab/nsp1149L149delCTT---5858All0.000011
ORF1ab/nsp1149L149WCTTTGG5858All0.000011
ORF1ab/nsp1149L149XCTTTGA3755All0.000007
ORF1ab/nsp1149L149XCTTTAG1255All0.000002
ORF1ab/nsp1149L149XCTTTAA655All0.000001
ORF1ab/nsp1149L149FCttTtt5252AY.46.40.008554
ORF1ab/nsp1149L149CCTtTGt4350All0.000008
ORF1ab/nsp1149L149CCTTTGC750All0.000001
ORF1ab/nsp1149L149RcTTcGA1347B.1.1.70.000012
ORF1ab/nsp1149L149RcTtcGt1247B.1.1.70.000011
ORF1ab/nsp1149L149RcTTcGG1047B.1.1.70.000009
ORF1ab/nsp1149L149RcTTcGC547B.1.1.70.000004
ORF1ab/nsp1149L149RCTTAGG447B.1.1.70.000004
ORF1ab/nsp1149L149RCTTAGA347B.1.1.70.000003
ORF1ab/nsp1149L149WCTTTGG4545B.1.1.70.00004
ORF1ab/nsp1149L149VCttGtt2842B.10.000256
ORF1ab/nsp1149L149VCtTGtG1042B.10.000092
ORF1ab/nsp1149L149VCtTGtA342B.10.000027
ORF1ab/nsp1149L149VCtTGtC142B.10.000009
ORF1ab/nsp1149L149ACTTGCG1741B.1.1.70.000015
ORF1ab/nsp1149L149ACTTGCA1341B.1.1.70.000012
ORF1ab/nsp1149L149ACTtGCt1041B.1.1.70.000009
ORF1ab/nsp1149L149ACTTGCC141B.1.1.70.000001
ORF1ab/nsp1149L149VCttGtt1740B.1.1.70.000015
ORF1ab/nsp1149L149VCtTGtG1440B.1.1.70.000013
ORF1ab/nsp1149L149VCtTGtC540B.1.1.70.000004
ORF1ab/nsp1149L149VCtTGtA440B.1.1.70.000004
ORF1ab/nsp1149L149XCTTTGA2939B.1.1.70.000026
ORF1ab/nsp1149L149XCTTTAG639B.1.1.70.000005
ORF1ab/nsp1149L149XCTTTAA439B.1.1.70.000004
ORF1ab/nsp1149L149LctTctA3538P.10.000551
ORF1ab/nsp1149L149LctTctC238P.10.000032
ORF1ab/nsp1149L149LctTctG138P.10.000016
ORF1ab/nsp1149L149CCTtTGt2935B.1.1.70.000026
ORF1ab/nsp1149L149CCTTTGC635B.1.1.70.000005
ORF1ab/nsp1149L149FCttTtt3333P.10.00052
ORF1ab/nsp1149L149PcTtcCt1532B.1.1.70.000013
ORF1ab/nsp1149L149PcTTcCA832B.1.1.70.000007
ORF1ab/nsp1149L149PcTTcCG732B.1.1.70.000006
ORF1ab/nsp1149L149PcTTcCC232B.1.1.70.000002
ORF1ab/nsp1149L149LctTctG1130B.10.000101
ORF1ab/nsp1149L149LCtTTtG930B.10.000082
ORF1ab/nsp1149L149LCtTTtA430B.10.000037
ORF1ab/nsp1149L149LctTctA330B.10.000027
ORF1ab/nsp1149L149LctTctC330B.10.000027
ORF1ab/nsp1149L149LctTctC2529AY.40.000039
ORF1ab/nsp1149L149LctTctA329AY.40.000005
ORF1ab/nsp1149L149LctTctG129AY.40.000002
ORF1ab/nsp1149L149FCttTtt2626AY.420.001046
ORF1ab/nsp1149L149LctTctC2626AZ.10.02255
ORF1ab/nsp1149L149LctTctG2125AY.46.60.001516
ORF1ab/nsp1149L149LctTctA425AY.46.60.000289
ORF1ab/nsp1149L149RcTtcGt1225B.10.00011
ORF1ab/nsp1149L149RcTTcGG825B.10.000073
ORF1ab/nsp1149L149RcTTcGA225B.10.000018
ORF1ab/nsp1149L149RcTTcGC125B.10.000009
ORF1ab/nsp1149L149RCTTAGG125B.10.000009
ORF1ab/nsp1149L149RCTTAGA125B.10.000009
ORF1ab/nsp1149L149FCttTtt2324B.1.617.20.000087
ORF1ab/nsp1149L149FCtTTtC124B.1.617.20.000004
ORF1ab/nsp1149L149GCTtGGt1223B.10.00011
ORF1ab/nsp1149L149GCTTGGG723B.10.000064
ORF1ab/nsp1149L149GCTTGGA323B.10.000027
ORF1ab/nsp1149L149GCTTGGC123B.10.000009
ORF1ab/nsp1149L149HcTtcAt2021All0.000004
ORF1ab/nsp1149L149HcTTcAC121All0
ORF1ab/nsp1149L149FCttTtt2121AY.470.000653
ORF1ab/nsp1149L149FCttTtt2121B.1.438.10.002252
ORF1ab/nsp1149L149ECTTGAG1218All0.000002
ORF1ab/nsp1149L149ECTTGAA618All0.000001
ORF1ab/nsp1149L149PcTtcCt1818AY.430.00008
ORF1ab/nsp1149L149FCttTtt1516B.10.000137
ORF1ab/nsp1149L149FCtTTtC116B.10.000009
ORF1ab/nsp1149L149FCttTtt1515B.1.20.000132
ORF1ab/nsp1149L149QcTTcAG914All0.000002
ORF1ab/nsp1149L149QcTTcAA514All0.000001
ORF1ab/nsp1149L149LctTctC1314AY.250.000078
ORF1ab/nsp1149L149LctTctA114AY.250.000006
ORF1ab/nsp1149L149ACTtGCt714B.10.000064
ORF1ab/nsp1149L149ACTTGCG514B.10.000046
ORF1ab/nsp1149L149ACTTGCA214B.10.000018
ORF1ab/nsp1149L149FCttTtt1313AY.1030.000081
ORF1ab/nsp1149L149FCttTtt1313AY.430.000058
ORF1ab/nsp1149L149LctTctC1113B.1.20.000097
ORF1ab/nsp1149L149LctTctA113B.1.20.000009
ORF1ab/nsp1149L149LCtTTtA113B.1.20.000009
ORF1ab/nsp1149L149delCTT---1212B.1.1.70.000011
ORF1ab/nsp1149L149LctTctC1212B.1.177.290.8
ORF1ab/nsp1149L149LctTctC1111AY.640.006548
ORF1ab/nsp1149L149SCTtTCt411B.10.000037
ORF1ab/nsp1149L149SCTTTCG311B.10.000027
ORF1ab/nsp1149L149SCTTTCA211B.10.000018
ORF1ab/nsp1149L149SCTtAGt211B.10.000018
ORF1ab/nsp1149L149ICttAtt1111B.1.1.370.002122
ORF1ab/nsp1149L149LctTctC1111B.1.1600.000343
ORF1ab/nsp1149L149YCTtTAt910All0.000002
ORF1ab/nsp1149L149DCTtGAt910All0.000002
ORF1ab/nsp1149L149YCTTTAC110All0
ORF1ab/nsp1149L149DCTTGAC110All0
ORF1ab/nsp1149L149ICttAtt1010AY.40.000016
ORF1ab/nsp1149L149PcTtcCt610B.10.000055
ORF1ab/nsp1149L149XCTTTAG510B.10.000046
ORF1ab/nsp1149L149PcTTcCG410B.10.000037
ORF1ab/nsp1149L149XCTTTGA410B.10.000037
ORF1ab/nsp1149L149XCTTTAA110B.10.000009
ORF1ab/nsp1149L149LctTctC910B.1.617.20.000034
ORF1ab/nsp1149L149LctTctA110B.1.617.20.000004
ORF1ab/nsp1149L149ICttAtt89B.10.000073
ORF1ab/nsp1149L149CCTtTGt89B.10.000073
ORF1ab/nsp1149L149ICtTAtA19B.10.000009
ORF1ab/nsp1149L149CCTTTGC19B.10.000009
ORF1ab/nsp1149L149TCTTACA38All0.000001
ORF1ab/nsp1149L149TCTTACG38All0.000001
ORF1ab/nsp1149L149TCTtACt28All0
ORF1ab/nsp1149L149LctTctC48AY.430.000018
ORF1ab/nsp1149L149LctTctA48AY.430.000018
ORF1ab/nsp1149L149ECTTGAG58B.1.1.70.000004
ORF1ab/nsp1149L149ECTTGAA38B.1.1.70.000003
ORF1ab/nsp1149L149VCttGtt77AY.440.000043
ORF1ab/nsp1149L149FCttTtt77AY.750.000392
ORF1ab/nsp1149L149WCTTTGG77B.10.000064
ORF1ab/nsp1149L149ICttAtt47B.1.1.70.000004
ORF1ab/nsp1149L149ICtTAtA27B.1.1.70.000002
ORF1ab/nsp1149L149ICtTAtC17B.1.1.70.000001
ORF1ab/nsp1149L149PcTtcCt67B.1.617.20.000023
ORF1ab/nsp1149L149PcTTcCC17B.1.617.20.000004
ORF1ab/nsp1149L149LctTctC66AY.330.000401
ORF1ab/nsp1149L149FCttTtt66AY.390.000148
ORF1ab/nsp1149L149RcTtcGt66AY.40.000009
ORF1ab/nsp1149L149HcTtcAt56B.10.000046
ORF1ab/nsp1149L149ECTTGAG56B.10.000046
ORF1ab/nsp1149L149DCTtGAt56B.10.000046
ORF1ab/nsp1149L149YCTtTAt56B.10.000046
ORF1ab/nsp1149L149QcTTcAG56B.10.000046
ORF1ab/nsp1149L149QcTTcAA16B.10.000009
ORF1ab/nsp1149L149ECTTGAA16B.10.000009
ORF1ab/nsp1149L149HcTTcAC16B.10.000009
ORF1ab/nsp1149L149YCTTTAC16B.10.000009
ORF1ab/nsp1149L149DCTTGAC16B.10.000009
ORF1ab/nsp1149L149HcTtcAt66B.1.4290.000141
ORF1ab/nsp1149L149LctTctC66N.20.230769
ORF1ab/nsp1149L149FCttTtt55AY.30.00005
ORF1ab/nsp1149L149FCttTtt55AY.360.000741
ORF1ab/nsp1149L149ICttAtt55AY.440.00003
ORF1ab/nsp1149L149LctTctC55AY.440.00003
ORF1ab/nsp1149L149TCTTACG25B.1.1.70.000002
ORF1ab/nsp1149L149TCTTACA25B.1.1.70.000002
ORF1ab/nsp1149L149TCTtACt15B.1.1.70.000001
ORF1ab/nsp1149L149FCttTtt55B.1.351.20.001513
ORF1ab/nsp1149L149FCttTtt55B.1.5370.1
ORF1ab/nsp1149L149FCttTtt55B.1.5770.003436
ORF1ab/nsp1149L149LctTctA45B.1.6210.000354
ORF1ab/nsp1149L149LctTctC15B.1.6210.000089
ORF1ab/nsp1149L149MCtTAtG44All0.000001
ORF1ab/nsp1149L149PcTtcCt44AY.1030.000025
ORF1ab/nsp1149L149PcTtcCt34B.1.10.000054
ORF1ab/nsp1149L149PcTTcCA14B.1.10.000018
ORF1ab/nsp1149L149LctTctG14B.1.1.10.000327
ORF1ab/nsp1149L149LctTctA14B.1.1.10.000327
ORF1ab/nsp1149L149LCtTTtA14B.1.1.10.000327
ORF1ab/nsp1149L149LCtTTtG14B.1.1.10.000327
ORF1ab/nsp1149L149FCttTtt44B.1.1.3060.001754
ORF1ab/nsp1149L149delCTT---44B.1.1.330.001684
ORF1ab/nsp1149L149delCTT---44B.1.1.3480.003185
ORF1ab/nsp1149L149PcTtcCt44B.1.1.4370.041667
ORF1ab/nsp1149L149QcTTcAG24B.1.1.70.000002
ORF1ab/nsp1149L149QcTTcAA24B.1.1.70.000002
ORF1ab/nsp1149L149RcTtcGt44B.1.1.830.01084
ORF1ab/nsp1149L149LctTctA24B.1.1770.000026
ORF1ab/nsp1149L149LctTctG14B.1.1770.000013
ORF1ab/nsp1149L149LCtTTtG14B.1.1770.000013
ORF1ab/nsp1149L149FCttTtt44B.1.177.210.000306
ORF1ab/nsp1149L149LctTctA14B.1.4170.028571
ORF1ab/nsp1149L149LCtTTtG14B.1.4170.028571
ORF1ab/nsp1149L149LctTctG14B.1.4170.028571
ORF1ab/nsp1149L149LCtTTtA14B.1.4170.028571
ORF1ab/nsp1149L149VCttGtt44B.1.617.20.000015
ORF1ab/nsp1149L149FCttTtt33AY.1130.000427
ORF1ab/nsp1149L149PcTtcCt23AY.250.000012
ORF1ab/nsp1149L149PcTTcCG13AY.250.000006
ORF1ab/nsp1149L149delCTT---33AY.40.000005
ORF1ab/nsp1149L149PcTtcCt33AY.40.000005
ORF1ab/nsp1149L149FCttTtt33AY.460.000312
ORF1ab/nsp1149L149PcTtcCt33AY.460.000312
ORF1ab/nsp1149L149LctTctC33AY.50.000062
ORF1ab/nsp1149L149FCttTtt33AY.700.000626
ORF1ab/nsp1149L149LctTctC33AY.750.000168
ORF1ab/nsp1149L149FCttTtt33AY.980.000237
ORF1ab/nsp1149L149TCTTACG13B.10.000009
ORF1ab/nsp1149L149TCTtACt13B.10.000009
ORF1ab/nsp1149L149TCTTACA13B.10.000009
ORF1ab/nsp1149L149FCttTtt33B.1.10.000054
ORF1ab/nsp1149L149LctTctC13B.1.10.000018
ORF1ab/nsp1149L149LCtTTtA13B.1.10.000018
ORF1ab/nsp1149L149LctTctA13B.1.10.000018
ORF1ab/nsp1149L149RcTTcGA13B.1.1.10.000327
ORF1ab/nsp1149L149RcTTcGG13B.1.1.10.000327
ORF1ab/nsp1149L149VCtTGtG13B.1.1.10.000327
ORF1ab/nsp1149L149VCtTGtA13B.1.1.10.000327
ORF1ab/nsp1149L149GCTtGGt13B.1.1.10.000327
ORF1ab/nsp1149L149GCTTGGA13B.1.1.10.000327
ORF1ab/nsp1149L149GCTTGGG13B.1.1.10.000327
ORF1ab/nsp1149L149VCttGtt13B.1.1.10.000327
ORF1ab/nsp1149L149RcTtcGt13B.1.1.10.000327
ORF1ab/nsp1149L149LctTctA33B.1.1.250.001706
ORF1ab/nsp1149L149MCtTAtG33B.1.1.70.000003
ORF1ab/nsp1149L149YCTtTAt33B.1.1.70.000003
ORF1ab/nsp1149L149FCttTtt33B.1.1770.00004
ORF1ab/nsp1149L149VCttGtt23B.1.1770.000026
ORF1ab/nsp1149L149RcTtcGt23B.1.1770.000026
ORF1ab/nsp1149L149RcTTcGG13B.1.1770.000013
ORF1ab/nsp1149L149VCtTGtG13B.1.1770.000013
ORF1ab/nsp1149L149RcTtcGt23B.1.20.000018
ORF1ab/nsp1149L149RcTTcGA13B.1.20.000009
ORF1ab/nsp1149L149LctTctC33B.1.4040.003906
ORF1ab/nsp1149L149VCtTGtA13B.1.4170.028571
ORF1ab/nsp1149L149GCTTGGG13B.1.4170.028571
ORF1ab/nsp1149L149GCTtGGt13B.1.4170.028571
ORF1ab/nsp1149L149VCttGtt13B.1.4170.028571
ORF1ab/nsp1149L149VCtTGtG13B.1.4170.028571
ORF1ab/nsp1149L149GCTTGGA13B.1.4170.028571
ORF1ab/nsp1149L149RcTTcGG13B.1.4170.028571
ORF1ab/nsp1149L149XCTTTGA13B.1.4170.028571
ORF1ab/nsp1149L149XCTTTAG13B.1.4170.028571
ORF1ab/nsp1149L149RcTTcGA13B.1.4170.028571
ORF1ab/nsp1149L149XCTTTAA13B.1.4170.028571
ORF1ab/nsp1149L149RcTtcGt13B.1.4170.028571
ORF1ab/nsp1149L149FCttTtt33B.1.4270.000151
ORF1ab/nsp1149L149LctTctA23B.1.4290.000047
ORF1ab/nsp1149L149LctTctC13B.1.4290.000024
ORF1ab/nsp1149L149VCtTGtA13P.10.000016
ORF1ab/nsp1149L149VCttGtt13P.10.000016
ORF1ab/nsp1149L149VCtTGtG13P.10.000016
ORF1ab/nsp1149L149LctTctG33R.10.00027
ORF1ab/nsp1149L149del1Ctt-tt12All0
ORF1ab/nsp1149L149del1cTtc-t12All0
ORF1ab/nsp1149L149FCttTtt22AY.1020.000053
ORF1ab/nsp1149L149PcTtcCt22AY.1020.000053
ORF1ab/nsp1149L149LctTctA22AY.1020.000053
ORF1ab/nsp1149L149LctTctC22AY.1030.000012
ORF1ab/nsp1149L149FCttTtt22AY.1190.000071
ORF1ab/nsp1149L149PcTtcCt22AY.1190.000071
ORF1ab/nsp1149L149ICttAtt22AY.20.000712
ORF1ab/nsp1149L149LctTctC22AY.200.000078
ORF1ab/nsp1149L149FCttTtt22AY.230.000139
ORF1ab/nsp1149L149FCttTtt22AY.250.000012
ORF1ab/nsp1149L149ICttAtt22AY.250.000012
ORF1ab/nsp1149L149ACTtGCt12AY.250.000006
ORF1ab/nsp1149L149ACTTGCG12AY.250.000006
ORF1ab/nsp1149L149RcTtcGt12AY.250.000006
ORF1ab/nsp1149L149SCTtTCt12AY.250.000006
ORF1ab/nsp1149L149RcTTcGG12AY.250.000006
ORF1ab/nsp1149L149SCTTTCG12AY.250.000006
ORF1ab/nsp1149L149GCTtGGt12AY.250.000006
ORF1ab/nsp1149L149GCTTGGG12AY.250.000006
ORF1ab/nsp1149L149LctTctC22AY.260.000057
ORF1ab/nsp1149L149LctTctA22AY.300.000791
ORF1ab/nsp1149L149delCTT---22AY.350.000466
ORF1ab/nsp1149L149FCttTtt22AY.4.20.000043
ORF1ab/nsp1149L149FCttTtt22AY.410.000588
ORF1ab/nsp1149L149delCTT---22AY.430.000009
ORF1ab/nsp1149L149ICttAtt22AY.430.000009
ORF1ab/nsp1149L149FCttTtt22AY.440.000012
ORF1ab/nsp1149L149PcTtcCt12AY.440.000006
ORF1ab/nsp1149L149PcTTcCC12AY.440.000006
ORF1ab/nsp1149L149LctTctC22AY.450.000243
ORF1ab/nsp1149L149LctTctG12AY.9.10.000084
ORF1ab/nsp1149L149LctTctC12AY.9.10.000084
ORF1ab/nsp1149L149FCttTtt22AY.910.001461
ORF1ab/nsp1149L149delCTT---22B.10.000018
ORF1ab/nsp1149L149SCTTTCA12B.1.10.000018
ORF1ab/nsp1149L149SCTtTCt12B.1.10.000018
ORF1ab/nsp1149L149FCttTtt22B.1.1.2140.000111
ORF1ab/nsp1149L149FCttTtt22B.1.1.3110.000716
ORF1ab/nsp1149L149LctTctC22B.1.1.5190.000079
ORF1ab/nsp1149L149DCTtGAt22B.1.1.70.000002
ORF1ab/nsp1149L149PcTtcCt22B.1.160.80.002577
ORF1ab/nsp1149L149GCTTGGG12B.1.1770.000013
ORF1ab/nsp1149L149GCTtGGt12B.1.1770.000013
ORF1ab/nsp1149L149ICttAtt22B.1.177.280.014815
ORF1ab/nsp1149L149VCttGtt12B.1.20.000009
ORF1ab/nsp1149L149VCtTGtA12B.1.20.000009
ORF1ab/nsp1149L149GCTtGGt12B.1.20.000009
ORF1ab/nsp1149L149GCTTGGA12B.1.20.000009
ORF1ab/nsp1149L149FCttTtt22B.1.2210.000142
ORF1ab/nsp1149L149LctTctA22B.1.2320.001075
ORF1ab/nsp1149L149FCttTtt22B.1.2580.000133
ORF1ab/nsp1149L149LCtTTtG12B.1.2580.000067
ORF1ab/nsp1149L149RcTTcGG12B.1.2580.000067
ORF1ab/nsp1149L149RcTtcGt12B.1.2580.000067
ORF1ab/nsp1149L149LctTctG12B.1.2580.000067
ORF1ab/nsp1149L149ECTTGAA12B.1.4170.028571
ORF1ab/nsp1149L149QcTTcAA12B.1.4170.028571
ORF1ab/nsp1149L149QcTTcAG12B.1.4170.028571
ORF1ab/nsp1149L149ECTTGAG12B.1.4170.028571
ORF1ab/nsp1149L149HcTtcAt22B.1.4270.000101
ORF1ab/nsp1149L149PcTtcCt22B.1.4290.000047
ORF1ab/nsp1149L149VCtTGtC12B.1.5250.000113
ORF1ab/nsp1149L149FCttTtt12B.1.5250.000113
ORF1ab/nsp1149L149VCttGtt12B.1.5250.000113
ORF1ab/nsp1149L149FCtTTtC12B.1.5250.000113
ORF1ab/nsp1149L149SCTTTCA12B.1.5760.000907
ORF1ab/nsp1149L149ACTTGCA12B.1.5760.000907
ORF1ab/nsp1149L149SCTTTCG12B.1.5760.000907
ORF1ab/nsp1149L149GCTTGGG12B.1.5760.000907
ORF1ab/nsp1149L149ACTTGCG12B.1.5760.000907
ORF1ab/nsp1149L149GCTTGGA12B.1.5760.000907
ORF1ab/nsp1149L149ICttAtt22B.1.617.20.000008
ORF1ab/nsp1149L149delCTT---22B.1.617.20.000008
ORF1ab/nsp1149L149RcTtcGt22B.1.617.20.000008
ORF1ab/nsp1149L149SCTtTCt12B.1.617.20.000004
ORF1ab/nsp1149L149SCTTTCC12B.1.617.20.000004
ORF1ab/nsp1149L149FCttTtt22C.360.001821
ORF1ab/nsp1149L149delCTT---22N.40.008511
ORF1ab/nsp1149L149delCTT---22N.60.014184
ORF1ab/nsp1149L149delCTT---22P.10.000032
ORF1ab/nsp1149L149ECTTGAA12P.10.000016
ORF1ab/nsp1149L149QcTTcAA12P.10.000016
ORF1ab/nsp1149L149QcTTcAG12P.10.000016
ORF1ab/nsp1149L149ECTTGAG12P.10.000016
ORF1ab/nsp1149L149delCTT---22P.20.000373
ORF1ab/nsp1149L149PcTtcCt11A0.000387
ORF1ab/nsp1149L149LctTctC11A.180.05
ORF1ab/nsp1149L149LctTctA11AY.1000.000046
ORF1ab/nsp1149L149ICttAtt11AY.1030.000006
ORF1ab/nsp1149L149RcTTcGC11AY.1030.000006
ORF1ab/nsp1149L149FCttTtt11AY.1080.001103
ORF1ab/nsp1149L149RcTtcGt11AY.1130.000142
ORF1ab/nsp1149L149delCTT---11AY.1160.000287
ORF1ab/nsp1149L149LctTctC11AY.1180.000063
ORF1ab/nsp1149L149delCTT---11AY.120.000316
ORF1ab/nsp1149L149FCttTtt11AY.1200.000037
ORF1ab/nsp1149L149LctTctC11AY.1200.000037
ORF1ab/nsp1149L149FCttTtt11AY.120.10.000321
ORF1ab/nsp1149L149LctTctC11AY.120.10.000321
ORF1ab/nsp1149L149FCttTtt11AY.1210.000135
ORF1ab/nsp1149L149FCttTtt11AY.190.00114
ORF1ab/nsp1149L149FCttTtt11AY.200.000039
ORF1ab/nsp1149L149ICttAtt11AY.230.00007
ORF1ab/nsp1149L149LctTctC11AY.230.00007
ORF1ab/nsp1149L149CCTtTGt11AY.250.000006
ORF1ab/nsp1149L149WCTTTGG11AY.250.000006
ORF1ab/nsp1149L149delCTT---11AY.250.000006
ORF1ab/nsp1149L149FCttTtt11AY.260.000028
ORF1ab/nsp1149L149FCttTtt11AY.270.000065
ORF1ab/nsp1149L149LctTctC11AY.270.000065
ORF1ab/nsp1149L149LctTctC11AY.3.10.000085
ORF1ab/nsp1149L149FCttTtt11AY.330.000067
ORF1ab/nsp1149L149FCttTtt11AY.340.000097
ORF1ab/nsp1149L149delCTT---11AY.380.000499
ORF1ab/nsp1149L149PcTtcCt11AY.390.000025
ORF1ab/nsp1149L149HcTtcAt11AY.40.000002
ORF1ab/nsp1149L149LctTctC11AY.4.20.000022
ORF1ab/nsp1149L149ICttAtt11AY.4.20.000022
ORF1ab/nsp1149L149RcTtcGt11AY.4.2.10.000149
ORF1ab/nsp1149L149delCTT---11AY.4.50.000107
ORF1ab/nsp1149L149RcTtcGt11AY.430.000004
ORF1ab/nsp1149L149FCttTtt11AY.450.000122
ORF1ab/nsp1149L149delCTT---11AY.460.000104
ORF1ab/nsp1149L149FCttTtt11AY.46.10.001027
ORF1ab/nsp1149L149RcTtcGt11AY.46.30.000934
ORF1ab/nsp1149L149FCttTtt11AY.46.60.000072
ORF1ab/nsp1149L149FCttTtt11AY.50.000021
ORF1ab/nsp1149L149LctTctC11AY.530.000288
ORF1ab/nsp1149L149ICttAtt11AY.7.10.000113
ORF1ab/nsp1149L149delCTT---11AY.710.000475
ORF1ab/nsp1149L149delCTT---11AY.75.10.00018
ORF1ab/nsp1149L149PcTtcCt11AY.780.001541
ORF1ab/nsp1149L149FCttTtt11AY.890.004902
ORF1ab/nsp1149L149LctTctA11AY.90.000068
ORF1ab/nsp1149L149delCTT---11AY.9.10.000084
ORF1ab/nsp1149L149FCttTtt11AY.9.20.000037
ORF1ab/nsp1149L149RcTtcGt11AY.920.000287
ORF1ab/nsp1149L149PcTtcCt11AY.930.000273
ORF1ab/nsp1149L149delCTT---11AY.950.000761
ORF1ab/nsp1149L149FCttTtt11AY.98.10.000048
ORF1ab/nsp1149L149LctTctC11AY.98.10.000048
ORF1ab/nsp1149L149RcTtcGt11AY.99.20.000092
ORF1ab/nsp1149L149HcTtcAt11B0.000128
ORF1ab/nsp1149L149del1cTtc-t11B.10.000009
ORF1ab/nsp1149L149MCtTAtG11B.10.000009
ORF1ab/nsp1149L149HcTtcAt11B.1.10.000018
ORF1ab/nsp1149L149VCttGtt11B.1.10.000018
ORF1ab/nsp1149L149CCTtTGt11B.1.1.10.000327
ORF1ab/nsp1149L149WCTTTGG11B.1.1.10.000327
ORF1ab/nsp1149L149XCTTTGA11B.1.1.10.000327
ORF1ab/nsp1149L149FCttTtt11B.1.1.10.000327
ORF1ab/nsp1149L149delCTT---11B.1.1.2200.001859
ORF1ab/nsp1149L149FCttTtt11B.1.1.2200.001859
ORF1ab/nsp1149L149PcTtcCt11B.1.1.2220.000204
ORF1ab/nsp1149L149PcTtcCt11B.1.1.2740.005051
ORF1ab/nsp1149L149PcTtcCt11B.1.1.2770.000759
ORF1ab/nsp1149L149LctTctA11B.1.1.280.000311
ORF1ab/nsp1149L149LctTctC11B.1.1.2840.000107
ORF1ab/nsp1149L149FCttTtt11B.1.1.2940.001266
ORF1ab/nsp1149L149FCttTtt11B.1.1.3160.000925
ORF1ab/nsp1149L149LctTctC11B.1.1.3180.000302
ORF1ab/nsp1149L149LctTctC11B.1.1.330.000421
ORF1ab/nsp1149L149FCttTtt11B.1.1.330.000421
ORF1ab/nsp1149L149FCttTtt11B.1.1.390.00051
ORF1ab/nsp1149L149RcTtcGt11B.1.1.3980.003226
ORF1ab/nsp1149L149FCttTtt11B.1.1.5190.00004
ORF1ab/nsp1149L149PcTtcCt11B.1.1.5190.00004
ORF1ab/nsp1149L149del1Ctt-tt11B.1.1.70.000001
ORF1ab/nsp1149L149HcTtcAt11B.1.1.70.000001
ORF1ab/nsp1149L149ICttAtt11B.1.1.700.000341
ORF1ab/nsp1149L149FCttTtt11B.1.1.740.00431
ORF1ab/nsp1149L149LctTctA11B.1.1100.004525
ORF1ab/nsp1149L149FCttTtt11B.1.1600.000031
ORF1ab/nsp1149L149delCTT---11B.1.160.70.002079
ORF1ab/nsp1149L149CCTtTGt11B.1.1770.000013
ORF1ab/nsp1149L149WCTTTGG11B.1.1770.000013
ORF1ab/nsp1149L149delCTT---11B.1.177.40.000211
ORF1ab/nsp1149L149FCttTtt11B.1.177.540.000606
ORF1ab/nsp1149L149SCTtTCt11B.1.177.70.000165
ORF1ab/nsp1149L149LctTctA11B.1.177.810.000189
ORF1ab/nsp1149L149CCTtTGt11B.1.20.000009
ORF1ab/nsp1149L149XCTTTGA11B.1.20.000009
ORF1ab/nsp1149L149VCttGtt11B.1.2220.001692
ORF1ab/nsp1149L149FCttTtt11B.1.2340.000132
ORF1ab/nsp1149L149FCttTtt11B.1.2430.00007
ORF1ab/nsp1149L149LctTctC11B.1.2430.00007
ORF1ab/nsp1149L149ICttAtt11B.1.2430.00007
ORF1ab/nsp1149L149ICttAtt11B.1.2580.000067
ORF1ab/nsp1149L149VCttGtt11B.1.2580.000067
ORF1ab/nsp1149L149WCTTTGG11B.1.2580.000067
ORF1ab/nsp1149L149CCTtTGt11B.1.2580.000067
ORF1ab/nsp1149L149PcTtcCt11B.1.3510.00003
ORF1ab/nsp1149L149delCTT---11B.1.360.000146
ORF1ab/nsp1149L149LctTctC11B.1.36.290.000517
ORF1ab/nsp1149L149FCttTtt11B.1.4000.000429
ORF1ab/nsp1149L149CCTtTGt11B.1.4170.028571
ORF1ab/nsp1149L149FCttTtt11B.1.4170.028571
ORF1ab/nsp1149L149HcTtcAt11B.1.4170.028571
ORF1ab/nsp1149L149DCTtGAt11B.1.4170.028571
ORF1ab/nsp1149L149YCTtTAt11B.1.4170.028571
ORF1ab/nsp1149L149WCTTTGG11B.1.4170.028571
ORF1ab/nsp1149L149PcTtcCt11B.1.4220.000812
ORF1ab/nsp1149L149LctTctG11B.1.4270.00005
ORF1ab/nsp1149L149delCTT---11B.1.4270.00005
ORF1ab/nsp1149L149delCTT---11B.1.4290.000024
ORF1ab/nsp1149L149RcTtcGt11B.1.5230.002451
ORF1ab/nsp1149L149LctTctC11B.1.5240.001406
ORF1ab/nsp1149L149LctTctC11B.1.5250.000113
ORF1ab/nsp1149L149WCTTTGG11B.1.5760.000907
ORF1ab/nsp1149L149XCTTTGA11B.1.5760.000907
ORF1ab/nsp1149L149LctTctA11B.1.5960.000087
ORF1ab/nsp1149L149FCttTtt11B.1.6090.000479
ORF1ab/nsp1149L149FCttTtt11B.1.6210.000089
ORF1ab/nsp1149L149LctTctA11B.1.6250.002353
ORF1ab/nsp1149L149PcTtcCt11B.1.6280.000352
ORF1ab/nsp1149L149LctTctC11B.1.6280.000352
ORF1ab/nsp1149L149VCttGtt11B.1.90.006173
ORF1ab/nsp1149L149FCttTtt11B.1.90.006173
ORF1ab/nsp1149L149HcTtcAt11B.60.00091
ORF1ab/nsp1149L149LctTctC11C.170.055556
ORF1ab/nsp1149L149delCTT---11C.350.000774
ORF1ab/nsp1149L149delCTT---11C.36.30.000567
ORF1ab/nsp1149L149LctTctA11D.20.000075
ORF1ab/nsp1149L149FCttTtt11D.20.000075
ORF1ab/nsp1149L149PcTtcCt11K.10.02381
ORF1ab/nsp1149L149DCTtGAt11P.10.000016
ORF1ab/nsp1149L149HcTtcAt11P.10.000016
ORF1ab/nsp1149L149FCttTtt11P.1.120.000484
ORF1ab/nsp1149L149LctTctA11P.1.140.000048
ORF1ab/nsp1149L149ICttAtt11Q.10.000126
ORF1ab/nsp1149L149delCTT---11Q.80.000165
ORF1ab/nsp1149L149LctTctA11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.