CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 149

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1149L149LL149LsynctTctC9207110.772826710-712
ORF1ab/nsp1149L149LL149LsynctTctA9201000.108696710-712
ORF1ab/nsp1149L149LL149LsynctTctG920600.0652174710-712
ORF1ab/nsp1149L149LL149LsynCtTTtG920320.0347826710-712
ORF1ab/nsp1149L149LL149LsynCtTTtA920170.0184783710-712
ORF1ab/nsp1149L149FL149FnonsynCttTtt6586500.987842710-712
ORF1ab/nsp1149L149FL149FnonsynCtTTtC65880.0121581710-712
ORF1ab/nsp1149L149GL149GnonsynCTTGGG115420.365217710-712
ORF1ab/nsp1149L149GL149GnonsynCTtGGt115400.347826710-712
ORF1ab/nsp1149L149GL149GnonsynCTTGGA115260.226087710-712
ORF1ab/nsp1149L149GL149GnonsynCTTGGC11570.0608696710-712
ORF1ab/nsp1149L149VL149VnonsynCttGtt113670.59292710-712
ORF1ab/nsp1149L149VL149VnonsynCtTGtG113280.247788710-712
ORF1ab/nsp1149L149VL149VnonsynCtTGtA113110.0973451710-712
ORF1ab/nsp1149L149VL149VnonsynCtTGtC11370.0619469710-712
ORF1ab/nsp1149L149PL149PnonsyncTtcCt110850.772727710-712
ORF1ab/nsp1149L149PL149PnonsyncTTcCG110120.109091710-712
ORF1ab/nsp1149L149PL149PnonsyncTTcCA11090.0818182710-712
ORF1ab/nsp1149L149PL149PnonsyncTTcCC11040.0363636710-712
ORF1ab/nsp1149L149RL149RnonsyncTtcGt109520.477064710-712
ORF1ab/nsp1149L149RL149RnonsyncTTcGG109230.211009710-712
ORF1ab/nsp1149L149RL149RnonsyncTTcGA109180.165138710-712
ORF1ab/nsp1149L149RL149RnonsyncTTcGC10970.0642202710-712
ORF1ab/nsp1149L149RL149RnonsynCTTAGG10950.0458716710-712
ORF1ab/nsp1149L149RL149RnonsynCTTAGA10940.0366972710-712
ORF1ab/nsp1149L149SL149SnonsynCTTTCG88310.352273710-712
ORF1ab/nsp1149L149SL149SnonsynCTTTCA88240.272727710-712
ORF1ab/nsp1149L149SL149SnonsynCTtTCt88220.25710-712
ORF1ab/nsp1149L149SL149SnonsynCTTTCC8850.0568182710-712
ORF1ab/nsp1149L149SL149SnonsynCTtAGt8850.0568182710-712
ORF1ab/nsp1149L149SL149SnonsynCTTAGC8810.0113636710-712
ORF1ab/nsp1149L149IL149InonsynCttAtt60560.933333710-712
ORF1ab/nsp1149L149IL149InonsynCtTAtA6030.05710-712
ORF1ab/nsp1149L149IL149InonsynCtTAtC6010.0166667710-712
ORF1ab/nsp1149L149AL149AnonsynCTTGCG59240.40678710-712
ORF1ab/nsp1149L149AL149AnonsynCTtGCt59180.305085710-712
ORF1ab/nsp1149L149AL149AnonsynCTTGCA59160.271186710-712
ORF1ab/nsp1149L149AL149AnonsynCTTGCC5910.0169492710-712
ORF1ab/nsp1149L149WL149WnonsynCTTTGG58581710-712
ORF1ab/nsp1149L149delL149deldelCTT---58581710-712
ORF1ab/nsp1149L149XL149XnonsynCTTTGA55370.672727710-712
ORF1ab/nsp1149L149XL149XnonsynCTTTAG55120.218182710-712
ORF1ab/nsp1149L149XL149XnonsynCTTTAA5560.109091710-712
ORF1ab/nsp1149L149CL149CnonsynCTtTGt50430.86710-712
ORF1ab/nsp1149L149CL149CnonsynCTTTGC5070.14710-712
ORF1ab/nsp1149L149HL149HnonsyncTtcAt21200.952381710-712
ORF1ab/nsp1149L149HL149HnonsyncTTcAC2110.047619710-712
ORF1ab/nsp1149L149EL149EnonsynCTTGAG18120.666667710-712
ORF1ab/nsp1149L149EL149EnonsynCTTGAA1860.333333710-712
ORF1ab/nsp1149L149QL149QnonsyncTTcAG1490.642857710-712
ORF1ab/nsp1149L149QL149QnonsyncTTcAA1450.357143710-712
ORF1ab/nsp1149L149YL149YnonsynCTtTAt1090.9710-712
ORF1ab/nsp1149L149DL149DnonsynCTtGAt1090.9710-712
ORF1ab/nsp1149L149DL149DnonsynCTTGAC1010.1710-712
ORF1ab/nsp1149L149YL149YnonsynCTTTAC1010.1710-712
ORF1ab/nsp1149L149TL149TnonsynCTTACG830.375710-712
ORF1ab/nsp1149L149TL149TnonsynCTTACA830.375710-712
ORF1ab/nsp1149L149TL149TnonsynCTtACt820.25710-712
ORF1ab/nsp1149L149ML149MnonsynCtTAtG441710-712
ORF1ab/nsp1149L149del1L149del1delcTtc-t210.5710-712
ORF1ab/nsp1149L149del1L149del1delCtt-tt210.5710-712

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1149L149LctTctC711920All0.000136
ORF1ab/nsp1149L149LctTctA100920All0.000019
ORF1ab/nsp1149L149LctTctG60920All0.000011
ORF1ab/nsp1149L149LCtTTtG32920All0.000006
ORF1ab/nsp1149L149LCtTTtA17920All0.000003
ORF1ab/nsp1149L149FCttTtt650658All0.000124
ORF1ab/nsp1149L149FCtTTtC8658All0.000002
ORF1ab/nsp1149L149LctTctC331331AY.4.50.03558
ORF1ab/nsp1149L149FCttTtt233233AY.40.000363
ORF1ab/nsp1149L149GCTTGGG42115All0.000008
ORF1ab/nsp1149L149GCTtGGt40115All0.000008
ORF1ab/nsp1149L149GCTTGGA26115All0.000005
ORF1ab/nsp1149L149GCTTGGC7115All0.000001
ORF1ab/nsp1149L149VCttGtt67113All0.000013
ORF1ab/nsp1149L149VCtTGtG28113All0.000005
ORF1ab/nsp1149L149VCtTGtA11113All0.000002
ORF1ab/nsp1149L149VCtTGtC7113All0.000001
ORF1ab/nsp1149L149PcTtcCt85110All0.000016
ORF1ab/nsp1149L149PcTTcCG12110All0.000002
ORF1ab/nsp1149L149PcTTcCA9110All0.000002
ORF1ab/nsp1149L149PcTTcCC4110All0.000001
ORF1ab/nsp1149L149RcTtcGt52109All0.00001
ORF1ab/nsp1149L149RcTTcGG23109All0.000004
ORF1ab/nsp1149L149RcTTcGA18109All0.000003
ORF1ab/nsp1149L149RcTTcGC7109All0.000001
ORF1ab/nsp1149L149RCTTAGG5109All0.000001
ORF1ab/nsp1149L149RCTTAGA4109All0.000001
ORF1ab/nsp1149L149LctTctC9696AY.30.000955
ORF1ab/nsp1149L149LctTctC3295B.1.1.70.000029
ORF1ab/nsp1149L149LCtTTtG1995B.1.1.70.000017
ORF1ab/nsp1149L149LctTctA1895B.1.1.70.000016
ORF1ab/nsp1149L149LctTctG1795B.1.1.70.000015
ORF1ab/nsp1149L149LCtTTtA995B.1.1.70.000008
ORF1ab/nsp1149L149SCTTTCG3188All0.000006
ORF1ab/nsp1149L149SCTTTCA2488All0.000005
ORF1ab/nsp1149L149SCTtTCt2288All0.000004
ORF1ab/nsp1149L149SCTtAGt588All0.000001
ORF1ab/nsp1149L149SCTTTCC588All0.000001
ORF1ab/nsp1149L149SCTTAGC188All0
ORF1ab/nsp1149L149GCTTGGG3078B.1.1.70.000027
ORF1ab/nsp1149L149GCTtGGt2378B.1.1.70.000021
ORF1ab/nsp1149L149GCTTGGA1978B.1.1.70.000017
ORF1ab/nsp1149L149GCTTGGC678B.1.1.70.000005
ORF1ab/nsp1149L149SCTTTCG2668B.1.1.70.000023
ORF1ab/nsp1149L149SCTTTCA2068B.1.1.70.000018
ORF1ab/nsp1149L149SCTtTCt1468B.1.1.70.000013
ORF1ab/nsp1149L149SCTTTCC468B.1.1.70.000004
ORF1ab/nsp1149L149SCTtAGt368B.1.1.70.000003
ORF1ab/nsp1149L149SCTTAGC168B.1.1.70.000001
ORF1ab/nsp1149L149LctTctC6666AY.570.043307
ORF1ab/nsp1149L149ICttAtt5660All0.000011
ORF1ab/nsp1149L149ICtTAtA360All0.000001
ORF1ab/nsp1149L149ICtTAtC160All0
ORF1ab/nsp1149L149FCttTtt5560B.1.1.70.000049
ORF1ab/nsp1149L149FCtTTtC560B.1.1.70.000004
ORF1ab/nsp1149L149ACTTGCG2459All0.000005
ORF1ab/nsp1149L149ACTtGCt1859All0.000003
ORF1ab/nsp1149L149ACTTGCA1659All0.000003
ORF1ab/nsp1149L149ACTTGCC159All0
ORF1ab/nsp1149L149delCTT---5858All0.000011
ORF1ab/nsp1149L149WCTTTGG5858All0.000011
ORF1ab/nsp1149L149XCTTTGA3755All0.000007
ORF1ab/nsp1149L149XCTTTAG1255All0.000002
ORF1ab/nsp1149L149XCTTTAA655All0.000001
ORF1ab/nsp1149L149FCttTtt5252AY.46.40.008554
ORF1ab/nsp1149L149CCTtTGt4350All0.000008
ORF1ab/nsp1149L149CCTTTGC750All0.000001
ORF1ab/nsp1149L149RcTTcGA1347B.1.1.70.000012
ORF1ab/nsp1149L149RcTtcGt1247B.1.1.70.000011
ORF1ab/nsp1149L149RcTTcGG1047B.1.1.70.000009
ORF1ab/nsp1149L149RcTTcGC547B.1.1.70.000004
ORF1ab/nsp1149L149RCTTAGG447B.1.1.70.000004
ORF1ab/nsp1149L149RCTTAGA347B.1.1.70.000003
ORF1ab/nsp1149L149WCTTTGG4545B.1.1.70.00004
ORF1ab/nsp1149L149VCttGtt2842B.10.000256
ORF1ab/nsp1149L149VCtTGtG1042B.10.000092
ORF1ab/nsp1149L149VCtTGtA342B.10.000027
ORF1ab/nsp1149L149VCtTGtC142B.10.000009
ORF1ab/nsp1149L149ACTTGCG1741B.1.1.70.000015
ORF1ab/nsp1149L149ACTTGCA1341B.1.1.70.000012
ORF1ab/nsp1149L149ACTtGCt1041B.1.1.70.000009
ORF1ab/nsp1149L149ACTTGCC141B.1.1.70.000001
ORF1ab/nsp1149L149VCttGtt1740B.1.1.70.000015
ORF1ab/nsp1149L149VCtTGtG1440B.1.1.70.000013
ORF1ab/nsp1149L149VCtTGtC540B.1.1.70.000004
ORF1ab/nsp1149L149VCtTGtA440B.1.1.70.000004
ORF1ab/nsp1149L149XCTTTGA2939B.1.1.70.000026
ORF1ab/nsp1149L149XCTTTAG639B.1.1.70.000005
ORF1ab/nsp1149L149XCTTTAA439B.1.1.70.000004
ORF1ab/nsp1149L149LctTctA3538P.10.000551
ORF1ab/nsp1149L149LctTctC238P.10.000032
ORF1ab/nsp1149L149LctTctG138P.10.000016
ORF1ab/nsp1149L149CCTtTGt2935B.1.1.70.000026
ORF1ab/nsp1149L149CCTTTGC635B.1.1.70.000005
ORF1ab/nsp1149L149FCttTtt3333P.10.00052
ORF1ab/nsp1149L149PcTtcCt1532B.1.1.70.000013
ORF1ab/nsp1149L149PcTTcCA832B.1.1.70.000007
ORF1ab/nsp1149L149PcTTcCG732B.1.1.70.000006
ORF1ab/nsp1149L149PcTTcCC232B.1.1.70.000002
ORF1ab/nsp1149L149LctTctG1130B.10.000101
ORF1ab/nsp1149L149LCtTTtG930B.10.000082
ORF1ab/nsp1149L149LCtTTtA430B.10.000037
ORF1ab/nsp1149L149LctTctA330B.10.000027
ORF1ab/nsp1149L149LctTctC330B.10.000027
ORF1ab/nsp1149L149LctTctC2529AY.40.000039
ORF1ab/nsp1149L149LctTctA329AY.40.000005
ORF1ab/nsp1149L149LctTctG129AY.40.000002
ORF1ab/nsp1149L149FCttTtt2626AY.420.001046
ORF1ab/nsp1149L149LctTctC2626AZ.10.02255
ORF1ab/nsp1149L149LctTctG2125AY.46.60.001516
ORF1ab/nsp1149L149LctTctA425AY.46.60.000289
ORF1ab/nsp1149L149RcTtcGt1225B.10.00011
ORF1ab/nsp1149L149RcTTcGG825B.10.000073
ORF1ab/nsp1149L149RcTTcGA225B.10.000018
ORF1ab/nsp1149L149RcTTcGC125B.10.000009
ORF1ab/nsp1149L149RCTTAGG125B.10.000009
ORF1ab/nsp1149L149RCTTAGA125B.10.000009
ORF1ab/nsp1149L149FCttTtt2324B.1.617.20.000087
ORF1ab/nsp1149L149FCtTTtC124B.1.617.20.000004
ORF1ab/nsp1149L149GCTtGGt1223B.10.00011
ORF1ab/nsp1149L149GCTTGGG723B.10.000064
ORF1ab/nsp1149L149GCTTGGA323B.10.000027
ORF1ab/nsp1149L149GCTTGGC123B.10.000009
ORF1ab/nsp1149L149HcTtcAt2021All0.000004
ORF1ab/nsp1149L149HcTTcAC121All0
ORF1ab/nsp1149L149FCttTtt2121AY.470.000653
ORF1ab/nsp1149L149FCttTtt2121B.1.438.10.002252
ORF1ab/nsp1149L149ECTTGAG1218All0.000002
ORF1ab/nsp1149L149ECTTGAA618All0.000001
ORF1ab/nsp1149L149PcTtcCt1818AY.430.00008
ORF1ab/nsp1149L149FCttTtt1516B.10.000137
ORF1ab/nsp1149L149FCtTTtC116B.10.000009
ORF1ab/nsp1149L149FCttTtt1515B.1.20.000132
ORF1ab/nsp1149L149QcTTcAG914All0.000002
ORF1ab/nsp1149L149QcTTcAA514All0.000001
ORF1ab/nsp1149L149LctTctC1314AY.250.000078
ORF1ab/nsp1149L149LctTctA114AY.250.000006
ORF1ab/nsp1149L149ACTtGCt714B.10.000064
ORF1ab/nsp1149L149ACTTGCG514B.10.000046
ORF1ab/nsp1149L149ACTTGCA214B.10.000018
ORF1ab/nsp1149L149FCttTtt1313AY.1030.000081
ORF1ab/nsp1149L149FCttTtt1313AY.430.000058
ORF1ab/nsp1149L149LctTctC1113B.1.20.000097
ORF1ab/nsp1149L149LctTctA113B.1.20.000009
ORF1ab/nsp1149L149LCtTTtA113B.1.20.000009
ORF1ab/nsp1149L149delCTT---1212B.1.1.70.000011
ORF1ab/nsp1149L149LctTctC1212B.1.177.290.8
ORF1ab/nsp1149L149LctTctC1111AY.640.006548
ORF1ab/nsp1149L149SCTtTCt411B.10.000037
ORF1ab/nsp1149L149SCTTTCG311B.10.000027
ORF1ab/nsp1149L149SCTTTCA211B.10.000018
ORF1ab/nsp1149L149SCTtAGt211B.10.000018
ORF1ab/nsp1149L149ICttAtt1111B.1.1.370.002122
ORF1ab/nsp1149L149LctTctC1111B.1.1600.000343
ORF1ab/nsp1149L149YCTtTAt910All0.000002
ORF1ab/nsp1149L149DCTtGAt910All0.000002
ORF1ab/nsp1149L149YCTTTAC110All0
ORF1ab/nsp1149L149DCTTGAC110All0
ORF1ab/nsp1149L149ICttAtt1010AY.40.000016
ORF1ab/nsp1149L149PcTtcCt610B.10.000055
ORF1ab/nsp1149L149XCTTTAG510B.10.000046
ORF1ab/nsp1149L149PcTTcCG410B.10.000037
ORF1ab/nsp1149L149XCTTTGA410B.10.000037
ORF1ab/nsp1149L149XCTTTAA110B.10.000009
ORF1ab/nsp1149L149LctTctC910B.1.617.20.000034
ORF1ab/nsp1149L149LctTctA110B.1.617.20.000004
ORF1ab/nsp1149L149ICttAtt89B.10.000073
ORF1ab/nsp1149L149CCTtTGt89B.10.000073
ORF1ab/nsp1149L149ICtTAtA19B.10.000009
ORF1ab/nsp1149L149CCTTTGC19B.10.000009
ORF1ab/nsp1149L149TCTTACA38All0.000001
ORF1ab/nsp1149L149TCTTACG38All0.000001
ORF1ab/nsp1149L149TCTtACt28All0
ORF1ab/nsp1149L149LctTctC48AY.430.000018
ORF1ab/nsp1149L149LctTctA48AY.430.000018
ORF1ab/nsp1149L149ECTTGAG58B.1.1.70.000004
ORF1ab/nsp1149L149ECTTGAA38B.1.1.70.000003
ORF1ab/nsp1149L149VCttGtt77AY.440.000043
ORF1ab/nsp1149L149FCttTtt77AY.750.000392
ORF1ab/nsp1149L149WCTTTGG77B.10.000064
ORF1ab/nsp1149L149ICttAtt47B.1.1.70.000004
ORF1ab/nsp1149L149ICtTAtA27B.1.1.70.000002
ORF1ab/nsp1149L149ICtTAtC17B.1.1.70.000001
ORF1ab/nsp1149L149PcTtcCt67B.1.617.20.000023
ORF1ab/nsp1149L149PcTTcCC17B.1.617.20.000004
ORF1ab/nsp1149L149LctTctC66AY.330.000401
ORF1ab/nsp1149L149FCttTtt66AY.390.000148
ORF1ab/nsp1149L149RcTtcGt66AY.40.000009
ORF1ab/nsp1149L149HcTtcAt56B.10.000046
ORF1ab/nsp1149L149ECTTGAG56B.10.000046
ORF1ab/nsp1149L149DCTtGAt56B.10.000046
ORF1ab/nsp1149L149YCTtTAt56B.10.000046
ORF1ab/nsp1149L149QcTTcAG56B.10.000046
ORF1ab/nsp1149L149QcTTcAA16B.10.000009
ORF1ab/nsp1149L149ECTTGAA16B.10.000009
ORF1ab/nsp1149L149HcTTcAC16B.10.000009
ORF1ab/nsp1149L149YCTTTAC16B.10.000009
ORF1ab/nsp1149L149DCTTGAC16B.10.000009
ORF1ab/nsp1149L149HcTtcAt66B.1.4290.000141
ORF1ab/nsp1149L149LctTctC66N.20.230769
ORF1ab/nsp1149L149FCttTtt55AY.30.00005
ORF1ab/nsp1149L149FCttTtt55AY.360.000741
ORF1ab/nsp1149L149ICttAtt55AY.440.00003
ORF1ab/nsp1149L149LctTctC55AY.440.00003
ORF1ab/nsp1149L149TCTTACG25B.1.1.70.000002
ORF1ab/nsp1149L149TCTTACA25B.1.1.70.000002
ORF1ab/nsp1149L149TCTtACt15B.1.1.70.000001
ORF1ab/nsp1149L149FCttTtt55B.1.351.20.001513
ORF1ab/nsp1149L149FCttTtt55B.1.5370.1
ORF1ab/nsp1149L149FCttTtt55B.1.5770.003436
ORF1ab/nsp1149L149LctTctA45B.1.6210.000354
ORF1ab/nsp1149L149LctTctC15B.1.6210.000089
ORF1ab/nsp1149L149MCtTAtG44All0.000001
ORF1ab/nsp1149L149PcTtcCt44AY.1030.000025
ORF1ab/nsp1149L149PcTtcCt34B.1.10.000054
ORF1ab/nsp1149L149PcTTcCA14B.1.10.000018
ORF1ab/nsp1149L149LctTctG14B.1.1.10.000327
ORF1ab/nsp1149L149LctTctA14B.1.1.10.000327
ORF1ab/nsp1149L149LCtTTtA14B.1.1.10.000327
ORF1ab/nsp1149L149LCtTTtG14B.1.1.10.000327
ORF1ab/nsp1149L149FCttTtt44B.1.1.3060.001754
ORF1ab/nsp1149L149delCTT---44B.1.1.330.001684
ORF1ab/nsp1149L149delCTT---44B.1.1.3480.003185
ORF1ab/nsp1149L149PcTtcCt44B.1.1.4370.041667
ORF1ab/nsp1149L149QcTTcAG24B.1.1.70.000002
ORF1ab/nsp1149L149QcTTcAA24B.1.1.70.000002
ORF1ab/nsp1149L149RcTtcGt44B.1.1.830.01084
ORF1ab/nsp1149L149LctTctA24B.1.1770.000026
ORF1ab/nsp1149L149LctTctG14B.1.1770.000013
ORF1ab/nsp1149L149LCtTTtG14B.1.1770.000013
ORF1ab/nsp1149L149FCttTtt44B.1.177.210.000306
ORF1ab/nsp1149L149LctTctA14B.1.4170.028571
ORF1ab/nsp1149L149LCtTTtG14B.1.4170.028571
ORF1ab/nsp1149L149LctTctG14B.1.4170.028571
ORF1ab/nsp1149L149LCtTTtA14B.1.4170.028571
ORF1ab/nsp1149L149VCttGtt44B.1.617.20.000015
ORF1ab/nsp1149L149FCttTtt33AY.1130.000427
ORF1ab/nsp1149L149PcTtcCt23AY.250.000012
ORF1ab/nsp1149L149PcTTcCG13AY.250.000006
ORF1ab/nsp1149L149delCTT---33AY.40.000005
ORF1ab/nsp1149L149PcTtcCt33AY.40.000005
ORF1ab/nsp1149L149FCttTtt33AY.460.000312
ORF1ab/nsp1149L149PcTtcCt33AY.460.000312
ORF1ab/nsp1149L149LctTctC33AY.50.000062
ORF1ab/nsp1149L149FCttTtt33AY.700.000626
ORF1ab/nsp1149L149LctTctC33AY.750.000168
ORF1ab/nsp1149L149FCttTtt33AY.980.000237
ORF1ab/nsp1149L149TCTTACG13B.10.000009
ORF1ab/nsp1149L149TCTtACt13B.10.000009
ORF1ab/nsp1149L149TCTTACA13B.10.000009
ORF1ab/nsp1149L149FCttTtt33B.1.10.000054
ORF1ab/nsp1149L149LctTctC13B.1.10.000018
ORF1ab/nsp1149L149LCtTTtA13B.1.10.000018
ORF1ab/nsp1149L149LctTctA13B.1.10.000018
ORF1ab/nsp1149L149RcTTcGA13B.1.1.10.000327
ORF1ab/nsp1149L149RcTTcGG13B.1.1.10.000327
ORF1ab/nsp1149L149VCtTGtG13B.1.1.10.000327
ORF1ab/nsp1149L149VCtTGtA13B.1.1.10.000327
ORF1ab/nsp1149L149GCTtGGt13B.1.1.10.000327
ORF1ab/nsp1149L149GCTTGGA13B.1.1.10.000327
ORF1ab/nsp1149L149GCTTGGG13B.1.1.10.000327
ORF1ab/nsp1149L149VCttGtt13B.1.1.10.000327
ORF1ab/nsp1149L149RcTtcGt13B.1.1.10.000327
ORF1ab/nsp1149L149LctTctA33B.1.1.250.001706
ORF1ab/nsp1149L149MCtTAtG33B.1.1.70.000003
ORF1ab/nsp1149L149YCTtTAt33B.1.1.70.000003
ORF1ab/nsp1149L149FCttTtt33B.1.1770.00004
ORF1ab/nsp1149L149VCttGtt23B.1.1770.000026
ORF1ab/nsp1149L149RcTtcGt23B.1.1770.000026
ORF1ab/nsp1149L149RcTTcGG13B.1.1770.000013
ORF1ab/nsp1149L149VCtTGtG13B.1.1770.000013
ORF1ab/nsp1149L149RcTtcGt23B.1.20.000018
ORF1ab/nsp1149L149RcTTcGA13B.1.20.000009
ORF1ab/nsp1149L149LctTctC33B.1.4040.003906
ORF1ab/nsp1149L149VCtTGtA13B.1.4170.028571
ORF1ab/nsp1149L149GCTTGGG13B.1.4170.028571
ORF1ab/nsp1149L149GCTtGGt13B.1.4170.028571
ORF1ab/nsp1149L149VCttGtt13B.1.4170.028571
ORF1ab/nsp1149L149VCtTGtG13B.1.4170.028571
ORF1ab/nsp1149L149GCTTGGA13B.1.4170.028571
ORF1ab/nsp1149L149RcTTcGG13B.1.4170.028571
ORF1ab/nsp1149L149XCTTTGA13B.1.4170.028571
ORF1ab/nsp1149L149XCTTTAG13B.1.4170.028571
ORF1ab/nsp1149L149RcTTcGA13B.1.4170.028571
ORF1ab/nsp1149L149XCTTTAA13B.1.4170.028571
ORF1ab/nsp1149L149RcTtcGt13B.1.4170.028571
ORF1ab/nsp1149L149FCttTtt33B.1.4270.000151
ORF1ab/nsp1149L149LctTctA23B.1.4290.000047
ORF1ab/nsp1149L149LctTctC13B.1.4290.000024
ORF1ab/nsp1149L149VCtTGtA13P.10.000016
ORF1ab/nsp1149L149VCttGtt13P.10.000016
ORF1ab/nsp1149L149VCtTGtG13P.10.000016
ORF1ab/nsp1149L149LctTctG33R.10.00027
ORF1ab/nsp1149L149del1Ctt-tt12All0
ORF1ab/nsp1149L149del1cTtc-t12All0
ORF1ab/nsp1149L149FCttTtt22AY.1020.000053
ORF1ab/nsp1149L149PcTtcCt22AY.1020.000053
ORF1ab/nsp1149L149LctTctA22AY.1020.000053
ORF1ab/nsp1149L149LctTctC22AY.1030.000012
ORF1ab/nsp1149L149FCttTtt22AY.1190.000071
ORF1ab/nsp1149L149PcTtcCt22AY.1190.000071
ORF1ab/nsp1149L149ICttAtt22AY.20.000712
ORF1ab/nsp1149L149LctTctC22AY.200.000078
ORF1ab/nsp1149L149FCttTtt22AY.230.000139
ORF1ab/nsp1149L149FCttTtt22AY.250.000012
ORF1ab/nsp1149L149ICttAtt22AY.250.000012
ORF1ab/nsp1149L149ACTtGCt12AY.250.000006
ORF1ab/nsp1149L149ACTTGCG12AY.250.000006
ORF1ab/nsp1149L149RcTtcGt12AY.250.000006
ORF1ab/nsp1149L149SCTtTCt12AY.250.000006
ORF1ab/nsp1149L149RcTTcGG12AY.250.000006
ORF1ab/nsp1149L149SCTTTCG12AY.250.000006
ORF1ab/nsp1149L149GCTtGGt12AY.250.000006
ORF1ab/nsp1149L149GCTTGGG12AY.250.000006
ORF1ab/nsp1149L149LctTctC22AY.260.000057
ORF1ab/nsp1149L149LctTctA22AY.300.000791
ORF1ab/nsp1149L149delCTT---22AY.350.000466
ORF1ab/nsp1149L149FCttTtt22AY.4.20.000043
ORF1ab/nsp1149L149FCttTtt22AY.410.000588
ORF1ab/nsp1149L149delCTT---22AY.430.000009
ORF1ab/nsp1149L149ICttAtt22AY.430.000009
ORF1ab/nsp1149L149FCttTtt22AY.440.000012
ORF1ab/nsp1149L149PcTtcCt12AY.440.000006
ORF1ab/nsp1149L149PcTTcCC12AY.440.000006
ORF1ab/nsp1149L149LctTctC22AY.450.000243
ORF1ab/nsp1149L149LctTctG12AY.9.10.000084
ORF1ab/nsp1149L149LctTctC12AY.9.10.000084
ORF1ab/nsp1149L149FCttTtt22AY.910.001461
ORF1ab/nsp1149L149delCTT---22B.10.000018
ORF1ab/nsp1149L149SCTTTCA12B.1.10.000018
ORF1ab/nsp1149L149SCTtTCt12B.1.10.000018
ORF1ab/nsp1149L149FCttTtt22B.1.1.2140.000111
ORF1ab/nsp1149L149FCttTtt22B.1.1.3110.000716
ORF1ab/nsp1149L149LctTctC22B.1.1.5190.000079
ORF1ab/nsp1149L149DCTtGAt22B.1.1.70.000002
ORF1ab/nsp1149L149PcTtcCt22B.1.160.80.002577
ORF1ab/nsp1149L149GCTTGGG12B.1.1770.000013
ORF1ab/nsp1149L149GCTtGGt12B.1.1770.000013
ORF1ab/nsp1149L149ICttAtt22B.1.177.280.014815
ORF1ab/nsp1149L149VCttGtt12B.1.20.000009
ORF1ab/nsp1149L149VCtTGtA12B.1.20.000009
ORF1ab/nsp1149L149GCTtGGt12B.1.20.000009
ORF1ab/nsp1149L149GCTTGGA12B.1.20.000009
ORF1ab/nsp1149L149FCttTtt22B.1.2210.000142
ORF1ab/nsp1149L149LctTctA22B.1.2320.001075
ORF1ab/nsp1149L149FCttTtt22B.1.2580.000133
ORF1ab/nsp1149L149LCtTTtG12B.1.2580.000067
ORF1ab/nsp1149L149RcTTcGG12B.1.2580.000067
ORF1ab/nsp1149L149RcTtcGt12B.1.2580.000067
ORF1ab/nsp1149L149LctTctG12B.1.2580.000067
ORF1ab/nsp1149L149ECTTGAA12B.1.4170.028571
ORF1ab/nsp1149L149QcTTcAA12B.1.4170.028571
ORF1ab/nsp1149L149QcTTcAG12B.1.4170.028571
ORF1ab/nsp1149L149ECTTGAG12B.1.4170.028571
ORF1ab/nsp1149L149HcTtcAt22B.1.4270.000101
ORF1ab/nsp1149L149PcTtcCt22B.1.4290.000047
ORF1ab/nsp1149L149VCtTGtC12B.1.5250.000113
ORF1ab/nsp1149L149FCttTtt12B.1.5250.000113
ORF1ab/nsp1149L149VCttGtt12B.1.5250.000113
ORF1ab/nsp1149L149FCtTTtC12B.1.5250.000113
ORF1ab/nsp1149L149SCTTTCA12B.1.5760.000907
ORF1ab/nsp1149L149ACTTGCA12B.1.5760.000907
ORF1ab/nsp1149L149SCTTTCG12B.1.5760.000907
ORF1ab/nsp1149L149GCTTGGG12B.1.5760.000907
ORF1ab/nsp1149L149ACTTGCG12B.1.5760.000907
ORF1ab/nsp1149L149GCTTGGA12B.1.5760.000907
ORF1ab/nsp1149L149ICttAtt22B.1.617.20.000008
ORF1ab/nsp1149L149delCTT---22B.1.617.20.000008
ORF1ab/nsp1149L149RcTtcGt22B.1.617.20.000008
ORF1ab/nsp1149L149SCTtTCt12B.1.617.20.000004
ORF1ab/nsp1149L149SCTTTCC12B.1.617.20.000004
ORF1ab/nsp1149L149FCttTtt22C.360.001821
ORF1ab/nsp1149L149delCTT---22N.40.008511
ORF1ab/nsp1149L149delCTT---22N.60.014184
ORF1ab/nsp1149L149delCTT---22P.10.000032
ORF1ab/nsp1149L149ECTTGAA12P.10.000016
ORF1ab/nsp1149L149QcTTcAA12P.10.000016
ORF1ab/nsp1149L149QcTTcAG12P.10.000016
ORF1ab/nsp1149L149ECTTGAG12P.10.000016
ORF1ab/nsp1149L149delCTT---22P.20.000373
ORF1ab/nsp1149L149PcTtcCt11A0.000387
ORF1ab/nsp1149L149LctTctC11A.180.05
ORF1ab/nsp1149L149LctTctA11AY.1000.000046
ORF1ab/nsp1149L149ICttAtt11AY.1030.000006
ORF1ab/nsp1149L149RcTTcGC11AY.1030.000006
ORF1ab/nsp1149L149FCttTtt11AY.1080.001103
ORF1ab/nsp1149L149RcTtcGt11AY.1130.000142
ORF1ab/nsp1149L149delCTT---11AY.1160.000287
ORF1ab/nsp1149L149LctTctC11AY.1180.000063
ORF1ab/nsp1149L149delCTT---11AY.120.000316
ORF1ab/nsp1149L149FCttTtt11AY.1200.000037
ORF1ab/nsp1149L149LctTctC11AY.1200.000037
ORF1ab/nsp1149L149FCttTtt11AY.120.10.000321
ORF1ab/nsp1149L149LctTctC11AY.120.10.000321
ORF1ab/nsp1149L149FCttTtt11AY.1210.000135
ORF1ab/nsp1149L149FCttTtt11AY.190.00114
ORF1ab/nsp1149L149FCttTtt11AY.200.000039
ORF1ab/nsp1149L149ICttAtt11AY.230.00007
ORF1ab/nsp1149L149LctTctC11AY.230.00007
ORF1ab/nsp1149L149CCTtTGt11AY.250.000006
ORF1ab/nsp1149L149WCTTTGG11AY.250.000006
ORF1ab/nsp1149L149delCTT---11AY.250.000006
ORF1ab/nsp1149L149FCttTtt11AY.260.000028
ORF1ab/nsp1149L149FCttTtt11AY.270.000065
ORF1ab/nsp1149L149LctTctC11AY.270.000065
ORF1ab/nsp1149L149LctTctC11AY.3.10.000085
ORF1ab/nsp1149L149FCttTtt11AY.330.000067
ORF1ab/nsp1149L149FCttTtt11AY.340.000097
ORF1ab/nsp1149L149delCTT---11AY.380.000499
ORF1ab/nsp1149L149PcTtcCt11AY.390.000025
ORF1ab/nsp1149L149HcTtcAt11AY.40.000002
ORF1ab/nsp1149L149LctTctC11AY.4.20.000022
ORF1ab/nsp1149L149ICttAtt11AY.4.20.000022
ORF1ab/nsp1149L149RcTtcGt11AY.4.2.10.000149
ORF1ab/nsp1149L149delCTT---11AY.4.50.000107
ORF1ab/nsp1149L149RcTtcGt11AY.430.000004
ORF1ab/nsp1149L149FCttTtt11AY.450.000122
ORF1ab/nsp1149L149delCTT---11AY.460.000104
ORF1ab/nsp1149L149FCttTtt11AY.46.10.001027
ORF1ab/nsp1149L149RcTtcGt11AY.46.30.000934
ORF1ab/nsp1149L149FCttTtt11AY.46.60.000072
ORF1ab/nsp1149L149FCttTtt11AY.50.000021
ORF1ab/nsp1149L149LctTctC11AY.530.000288
ORF1ab/nsp1149L149ICttAtt11AY.7.10.000113
ORF1ab/nsp1149L149delCTT---11AY.710.000475
ORF1ab/nsp1149L149delCTT---11AY.75.10.00018
ORF1ab/nsp1149L149PcTtcCt11AY.780.001541
ORF1ab/nsp1149L149FCttTtt11AY.890.004902
ORF1ab/nsp1149L149LctTctA11AY.90.000068
ORF1ab/nsp1149L149delCTT---11AY.9.10.000084
ORF1ab/nsp1149L149FCttTtt11AY.9.20.000037
ORF1ab/nsp1149L149RcTtcGt11AY.920.000287
ORF1ab/nsp1149L149PcTtcCt11AY.930.000273
ORF1ab/nsp1149L149delCTT---11AY.950.000761
ORF1ab/nsp1149L149FCttTtt11AY.98.10.000048
ORF1ab/nsp1149L149LctTctC11AY.98.10.000048
ORF1ab/nsp1149L149RcTtcGt11AY.99.20.000092
ORF1ab/nsp1149L149HcTtcAt11B0.000128
ORF1ab/nsp1149L149del1cTtc-t11B.10.000009
ORF1ab/nsp1149L149MCtTAtG11B.10.000009
ORF1ab/nsp1149L149HcTtcAt11B.1.10.000018
ORF1ab/nsp1149L149VCttGtt11B.1.10.000018
ORF1ab/nsp1149L149CCTtTGt11B.1.1.10.000327
ORF1ab/nsp1149L149WCTTTGG11B.1.1.10.000327
ORF1ab/nsp1149L149XCTTTGA11B.1.1.10.000327
ORF1ab/nsp1149L149FCttTtt11B.1.1.10.000327
ORF1ab/nsp1149L149delCTT---11B.1.1.2200.001859
ORF1ab/nsp1149L149FCttTtt11B.1.1.2200.001859
ORF1ab/nsp1149L149PcTtcCt11B.1.1.2220.000204
ORF1ab/nsp1149L149PcTtcCt11B.1.1.2740.005051
ORF1ab/nsp1149L149PcTtcCt11B.1.1.2770.000759
ORF1ab/nsp1149L149LctTctA11B.1.1.280.000311
ORF1ab/nsp1149L149LctTctC11B.1.1.2840.000107
ORF1ab/nsp1149L149FCttTtt11B.1.1.2940.001266
ORF1ab/nsp1149L149FCttTtt11B.1.1.3160.000925
ORF1ab/nsp1149L149LctTctC11B.1.1.3180.000302
ORF1ab/nsp1149L149LctTctC11B.1.1.330.000421
ORF1ab/nsp1149L149FCttTtt11B.1.1.330.000421
ORF1ab/nsp1149L149FCttTtt11B.1.1.390.00051
ORF1ab/nsp1149L149RcTtcGt11B.1.1.3980.003226
ORF1ab/nsp1149L149FCttTtt11B.1.1.5190.00004
ORF1ab/nsp1149L149PcTtcCt11B.1.1.5190.00004
ORF1ab/nsp1149L149del1Ctt-tt11B.1.1.70.000001
ORF1ab/nsp1149L149HcTtcAt11B.1.1.70.000001
ORF1ab/nsp1149L149ICttAtt11B.1.1.700.000341
ORF1ab/nsp1149L149FCttTtt11B.1.1.740.00431
ORF1ab/nsp1149L149LctTctA11B.1.1100.004525
ORF1ab/nsp1149L149FCttTtt11B.1.1600.000031
ORF1ab/nsp1149L149delCTT---11B.1.160.70.002079
ORF1ab/nsp1149L149CCTtTGt11B.1.1770.000013
ORF1ab/nsp1149L149WCTTTGG11B.1.1770.000013
ORF1ab/nsp1149L149delCTT---11B.1.177.40.000211
ORF1ab/nsp1149L149FCttTtt11B.1.177.540.000606
ORF1ab/nsp1149L149SCTtTCt11B.1.177.70.000165
ORF1ab/nsp1149L149LctTctA11B.1.177.810.000189
ORF1ab/nsp1149L149CCTtTGt11B.1.20.000009
ORF1ab/nsp1149L149XCTTTGA11B.1.20.000009
ORF1ab/nsp1149L149VCttGtt11B.1.2220.001692
ORF1ab/nsp1149L149FCttTtt11B.1.2340.000132
ORF1ab/nsp1149L149FCttTtt11B.1.2430.00007
ORF1ab/nsp1149L149LctTctC11B.1.2430.00007
ORF1ab/nsp1149L149ICttAtt11B.1.2430.00007
ORF1ab/nsp1149L149ICttAtt11B.1.2580.000067
ORF1ab/nsp1149L149VCttGtt11B.1.2580.000067
ORF1ab/nsp1149L149WCTTTGG11B.1.2580.000067
ORF1ab/nsp1149L149CCTtTGt11B.1.2580.000067
ORF1ab/nsp1149L149PcTtcCt11B.1.3510.00003
ORF1ab/nsp1149L149delCTT---11B.1.360.000146
ORF1ab/nsp1149L149LctTctC11B.1.36.290.000517
ORF1ab/nsp1149L149FCttTtt11B.1.4000.000429
ORF1ab/nsp1149L149CCTtTGt11B.1.4170.028571
ORF1ab/nsp1149L149FCttTtt11B.1.4170.028571
ORF1ab/nsp1149L149HcTtcAt11B.1.4170.028571
ORF1ab/nsp1149L149DCTtGAt11B.1.4170.028571
ORF1ab/nsp1149L149YCTtTAt11B.1.4170.028571
ORF1ab/nsp1149L149WCTTTGG11B.1.4170.028571
ORF1ab/nsp1149L149PcTtcCt11B.1.4220.000812
ORF1ab/nsp1149L149LctTctG11B.1.4270.00005
ORF1ab/nsp1149L149delCTT---11B.1.4270.00005
ORF1ab/nsp1149L149delCTT---11B.1.4290.000024
ORF1ab/nsp1149L149RcTtcGt11B.1.5230.002451
ORF1ab/nsp1149L149LctTctC11B.1.5240.001406
ORF1ab/nsp1149L149LctTctC11B.1.5250.000113
ORF1ab/nsp1149L149WCTTTGG11B.1.5760.000907
ORF1ab/nsp1149L149XCTTTGA11B.1.5760.000907
ORF1ab/nsp1149L149LctTctA11B.1.5960.000087
ORF1ab/nsp1149L149FCttTtt11B.1.6090.000479
ORF1ab/nsp1149L149FCttTtt11B.1.6210.000089
ORF1ab/nsp1149L149LctTctA11B.1.6250.002353
ORF1ab/nsp1149L149PcTtcCt11B.1.6280.000352
ORF1ab/nsp1149L149LctTctC11B.1.6280.000352
ORF1ab/nsp1149L149VCttGtt11B.1.90.006173
ORF1ab/nsp1149L149FCttTtt11B.1.90.006173
ORF1ab/nsp1149L149HcTtcAt11B.60.00091
ORF1ab/nsp1149L149LctTctC11C.170.055556
ORF1ab/nsp1149L149delCTT---11C.350.000774
ORF1ab/nsp1149L149delCTT---11C.36.30.000567
ORF1ab/nsp1149L149LctTctA11D.20.000075
ORF1ab/nsp1149L149FCttTtt11D.20.000075
ORF1ab/nsp1149L149PcTtcCt11K.10.02381
ORF1ab/nsp1149L149DCTtGAt11P.10.000016
ORF1ab/nsp1149L149HcTtcAt11P.10.000016
ORF1ab/nsp1149L149FCttTtt11P.1.120.000484
ORF1ab/nsp1149L149LctTctA11P.1.140.000048
ORF1ab/nsp1149L149ICttAtt11Q.10.000126
ORF1ab/nsp1149L149delCTT---11Q.80.000165
ORF1ab/nsp1149L149LctTctA11Q.80.000165