CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 147 & Codon = gGc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1147D147GD147GnonsyngAcgGc165714700.887145704-706

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1147D147GgAcgGc14701657All0.000281
ORF1ab/nsp1147D147GgAcgGc684686B.1.3610.881443
ORF1ab/nsp1147D147GgAcgGc231297B.10.002116
ORF1ab/nsp1147D147GgAcgGc102155B.1.1.70.000091
ORF1ab/nsp1147D147GgAcgGc6465B.1.20.000564
ORF1ab/nsp1147D147GgAcgGc3445B.1.1770.000448
ORF1ab/nsp1147D147GgAcgGc3441B.1.10.000617
ORF1ab/nsp1147D147GgAcgGc3030AY.1020.000795
ORF1ab/nsp1147D147GgAcgGc1422B.1.2580.000932
ORF1ab/nsp1147D147GgAcgGc1920B.1.5260.000447
ORF1ab/nsp1147D147GgAcgGc1919B.1.617.20.000072
ORF1ab/nsp1147D147GgAcgGc1317B.1.1600.000405
ORF1ab/nsp1147D147GgAcgGc1616AY.40.000025
ORF1ab/nsp1147D147GgAcgGc1416B.1.177.440.007265
ORF1ab/nsp1147D147GgAcgGc1013B.1.2210.00071
ORF1ab/nsp1147D147GgAcgGc712B.1.1.3850.03125
ORF1ab/nsp1147D147GgAcgGc1012B.1.1.390.005097
ORF1ab/nsp1147D147GgAcgGc810B.1.1.700.002729
ORF1ab/nsp1147D147GgAcgGc99AY.99.20.000829
ORF1ab/nsp1147D147GgAcgGc77AY.390.000173
ORF1ab/nsp1147D147GgAcgGc77AY.440.000043
ORF1ab/nsp1147D147GgAcgGc66AY.430.000027
ORF1ab/nsp1147D147GgAcgGc66B.1.9.40.03681
ORF1ab/nsp1147D147GgAcgGc35B.1.6090.001438
ORF1ab/nsp1147D147GgAcgGc35B.1.780.025641
ORF1ab/nsp1147D147GgAcgGc55C.350.00387
ORF1ab/nsp1147D147GgAcgGc45P.10.000063
ORF1ab/nsp1147D147GgAcgGc34AY.250.000018
ORF1ab/nsp1147D147GgAcgGc44AY.260.000113
ORF1ab/nsp1147D147GgAcgGc44AY.9.10.000335
ORF1ab/nsp1147D147GgAcgGc44B.1.177.770.002905
ORF1ab/nsp1147D147GgAcgGc44B.1.5800.01626
ORF1ab/nsp1147D147GgAcgGc13B.1.1.10.000327
ORF1ab/nsp1147D147GgAcgGc23B.1.1.1700.002494
ORF1ab/nsp1147D147GgAcgGc33B.1.1.2770.002276
ORF1ab/nsp1147D147GgAcgGc33B.1.177.810.000568
ORF1ab/nsp1147D147GgAcgGc23B.1.177.860.000367
ORF1ab/nsp1147D147GgAcgGc13B.1.2220.001692
ORF1ab/nsp1147D147GgAcgGc33B.1.258.110.001189
ORF1ab/nsp1147D147GgAcgGc13B.1.4370.020833
ORF1ab/nsp1147D147GgAcgGc23B.1.5760.001813
ORF1ab/nsp1147D147GgAcgGc33B.1.5950.000783
ORF1ab/nsp1147D147GgAcgGc33P.1.70.000958
ORF1ab/nsp1147D147GgAcgGc22B.1.1.1890.003026
ORF1ab/nsp1147D147GgAcgGc22B.1.1.2220.000408
ORF1ab/nsp1147D147GgAcgGc12B.1.1.3170.000412
ORF1ab/nsp1147D147GgAcgGc22B.1.1.3720.001377
ORF1ab/nsp1147D147GgAcgGc22B.1.1460.008475
ORF1ab/nsp1147D147GgAcgGc12B.1.177.750.001041
ORF1ab/nsp1147D147GgAcgGc22B.1.2320.001075
ORF1ab/nsp1147D147GgAcgGc22B.1.3250.013793
ORF1ab/nsp1147D147GgAcgGc22B.1.36.170.000988
ORF1ab/nsp1147D147GgAcgGc22B.1.5960.000174
ORF1ab/nsp1147D147GgAcgGc12B.1.90.006173
ORF1ab/nsp1147D147GgAcgGc12C.300.001727
ORF1ab/nsp1147D147GgAcgGc22K.10.047619
ORF1ab/nsp1147D147GgAcgGc11A.210.00277
ORF1ab/nsp1147D147GgAcgGc11AY.1170.000085
ORF1ab/nsp1147D147GgAcgGc11AY.23.10.000417
ORF1ab/nsp1147D147GgAcgGc11AY.350.000233
ORF1ab/nsp1147D147GgAcgGc11AY.450.000122
ORF1ab/nsp1147D147GgAcgGc11AY.460.000104
ORF1ab/nsp1147D147GgAcgGc11AY.46.40.000165
ORF1ab/nsp1147D147GgAcgGc11AY.790.001211
ORF1ab/nsp1147D147GgAcgGc11AY.980.000079
ORF1ab/nsp1147D147GgAcgGc11B.1.1.1290.009174
ORF1ab/nsp1147D147GgAcgGc11B.1.1.1490.016393
ORF1ab/nsp1147D147GgAcgGc11B.1.1.1530.001095
ORF1ab/nsp1147D147GgAcgGc11B.1.1.1930.111111
ORF1ab/nsp1147D147GgAcgGc11B.1.1.2200.001859
ORF1ab/nsp1147D147GgAcgGc11B.1.1.3010.001179
ORF1ab/nsp1147D147GgAcgGc11B.1.1.3480.000796
ORF1ab/nsp1147D147GgAcgGc11B.1.1.3890.006061
ORF1ab/nsp1147D147GgAcgGc11B.1.1.4870.005587
ORF1ab/nsp1147D147GgAcgGc11B.1.1.5150.02
ORF1ab/nsp1147D147GgAcgGc11B.1.1.5190.00004
ORF1ab/nsp1147D147GgAcgGc11B.1.1.5210.005348
ORF1ab/nsp1147D147GgAcgGc11B.1.1.5280.004808
ORF1ab/nsp1147D147GgAcgGc11B.1.1700.00431
ORF1ab/nsp1147D147GgAcgGc11B.1.177.330.001645
ORF1ab/nsp1147D147GgAcgGc11B.1.177.350.000691
ORF1ab/nsp1147D147GgAcgGc11B.1.177.730.000566
ORF1ab/nsp1147D147GgAcgGc11B.1.177.830.001481
ORF1ab/nsp1147D147GgAcgGc11B.1.1790.003759
ORF1ab/nsp1147D147GgAcgGc11B.1.2840.013158
ORF1ab/nsp1147D147GgAcgGc11B.1.2930.0125
ORF1ab/nsp1147D147GgAcgGc11B.1.3290.000608
ORF1ab/nsp1147D147GgAcgGc11B.1.3300.028571
ORF1ab/nsp1147D147GgAcgGc11B.1.3370.005587
ORF1ab/nsp1147D147GgAcgGc11B.1.360.000146
ORF1ab/nsp1147D147GgAcgGc11B.1.36.100.004785
ORF1ab/nsp1147D147GgAcgGc11B.1.36.240.006173
ORF1ab/nsp1147D147GgAcgGc11B.1.3690.000285
ORF1ab/nsp1147D147GgAcgGc11B.1.3960.000706
ORF1ab/nsp1147D147GgAcgGc11B.1.5650.00081
ORF1ab/nsp1147D147GgAcgGc11B.1.5820.000491
ORF1ab/nsp1147D147GgAcgGc11B.1.6210.000089
ORF1ab/nsp1147D147GgAcgGc11B.1.6270.00202
ORF1ab/nsp1147D147GgAcgGc11B.1.88.10.004808
ORF1ab/nsp1147D147GgAcgGc11B.1.9.50.005682
ORF1ab/nsp1147D147GgAcgGc11P.1.150.000232
ORF1ab/nsp1147D147GgAcgGc11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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