CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp1 | 147 | D147G | D147G | nonsyn | gAc | gGc | 1657 | 1470 | 0.887145 | 704-706 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1470 | 1657 | All | 0.000281 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 684 | 686 | B.1.361 | 0.881443 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 231 | 297 | B.1 | 0.002116 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 102 | 155 | B.1.1.7 | 0.000091 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 64 | 65 | B.1.2 | 0.000564 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 34 | 45 | B.1.177 | 0.000448 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 34 | 41 | B.1.1 | 0.000617 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 30 | 30 | AY.102 | 0.000795 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 14 | 22 | B.1.258 | 0.000932 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 19 | 20 | B.1.526 | 0.000447 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 13 | 17 | B.1.160 | 0.000405 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 14 | 16 | B.1.177.44 | 0.007265 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 10 | 13 | B.1.221 | 0.00071 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 7 | 12 | B.1.1.385 | 0.03125 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 10 | 12 | B.1.1.39 | 0.005097 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 8 | 10 | B.1.1.70 | 0.002729 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 6 | 6 | B.1.9.4 | 0.03681 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 3 | 5 | B.1.609 | 0.001438 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 3 | 5 | B.1.78 | 0.025641 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 5 | 5 | C.35 | 0.00387 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 4 | 5 | P.1 | 0.000063 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 3 | 4 | AY.25 | 0.000018 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 4 | 4 | B.1.177.77 | 0.002905 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 4 | 4 | B.1.580 | 0.01626 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 3 | B.1.1.1 | 0.000327 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 2 | 3 | B.1.1.170 | 0.002494 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 3 | 3 | B.1.1.277 | 0.002276 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 2 | 3 | B.1.177.86 | 0.000367 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 3 | B.1.222 | 0.001692 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 3 | 3 | B.1.258.11 | 0.001189 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 3 | B.1.437 | 0.020833 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 2 | 3 | B.1.576 | 0.001813 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 2 | B.1.1.317 | 0.000412 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 2 | 2 | B.1.146 | 0.008475 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 2 | B.1.177.75 | 0.001041 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 2 | 2 | B.1.325 | 0.013793 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 2 | B.1.9 | 0.006173 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 2 | C.30 | 0.001727 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 2 | 2 | K.1 | 0.047619 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.1.129 | 0.009174 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.1.149 | 0.016393 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.1.193 | 0.111111 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.1.515 | 0.02 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.330 | 0.028571 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.337 | 0.005587 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp1 | 147 | D147G | gAc | gGc | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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