CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp1 : CodonNum = 147 & Codon = Tac

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1147D147YD147YnonsynGacTac7127110.998595704-706

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1147D147YGacTac711712All0.000136
ORF1ab/nsp1147D147YGacTac326326B.1.1.2840.035012
ORF1ab/nsp1147D147YGacTac9899B.1.617.20.000369
ORF1ab/nsp1147D147YGacTac5555AY.40.000086
ORF1ab/nsp1147D147YGacTac5454AY.430.000239
ORF1ab/nsp1147D147YGacTac2828R.10.00252
ORF1ab/nsp1147D147YGacTac2626B.1.1.70.000023
ORF1ab/nsp1147D147YGacTac1818AY.250.000108
ORF1ab/nsp1147D147YGacTac1616AY.440.000097
ORF1ab/nsp1147D147YGacTac1313AY.30.000129
ORF1ab/nsp1147D147YGacTac1313B.10.000119
ORF1ab/nsp1147D147YGacTac1010AY.120.10.00321
ORF1ab/nsp1147D147YGacTac77P.10.00011
ORF1ab/nsp1147D147YGacTac44B.1.10.000073
ORF1ab/nsp1147D147YGacTac44B.1.4970.001259
ORF1ab/nsp1147D147YGacTac33AY.1030.000019
ORF1ab/nsp1147D147YGacTac33B.1.20.000026
ORF1ab/nsp1147D147YGacTac22A.280.005291
ORF1ab/nsp1147D147YGacTac22AY.120.000632
ORF1ab/nsp1147D147YGacTac22AY.230.000139
ORF1ab/nsp1147D147YGacTac22AY.350.000466
ORF1ab/nsp1147D147YGacTac22AY.390.000049
ORF1ab/nsp1147D147YGacTac22AY.460.000208
ORF1ab/nsp1147D147YGacTac22B.1.1.370.000386
ORF1ab/nsp1147D147YGacTac11AY.100.00053
ORF1ab/nsp1147D147YGacTac11AY.1020.000027
ORF1ab/nsp1147D147YGacTac11AY.1110.000183
ORF1ab/nsp1147D147YGacTac11AY.1200.000037
ORF1ab/nsp1147D147YGacTac11AY.290.000016
ORF1ab/nsp1147D147YGacTac11AY.46.10.001027
ORF1ab/nsp1147D147YGacTac11AY.46.60.000072
ORF1ab/nsp1147D147YGacTac11AY.750.000056
ORF1ab/nsp1147D147YGacTac11B.1.1.280.000311
ORF1ab/nsp1147D147YGacTac11B.1.1.3480.000796
ORF1ab/nsp1147D147YGacTac11B.1.1.4860.001577
ORF1ab/nsp1147D147YGacTac11B.1.160.310.008065
ORF1ab/nsp1147D147YGacTac11B.1.177.40.000211
ORF1ab/nsp1147D147YGacTac11B.1.177.600.000218
ORF1ab/nsp1147D147YGacTac11B.1.4090.000781
ORF1ab/nsp1147D147YGacTac11B.1.5750.000303
ORF1ab/nsp1147D147YGacTac11B.1.5800.004065
ORF1ab/nsp1147D147YGacTac11B.60.00091
ORF1ab/nsp1147D147YGacTac11C.170.055556

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.